Wall clock time and date at job start Tue Mar 31 2020 17:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 109.46722 * 2 1 4 4 N 1.28719 * 126.02986 * 267.41862 * 3 2 1 5 5 N 1.28516 * 110.63271 * 180.02562 * 4 3 2 6 6 C 1.33319 * 109.43999 * 0.02562 * 5 4 3 7 7 C 1.37007 * 106.37300 * 359.97438 * 6 5 4 8 8 C 1.47231 * 127.18727 * 180.02562 * 7 6 5 9 9 O 1.21622 * 119.99717 * 152.75930 * 8 7 6 10 10 N 1.34779 * 120.00287 * 332.75645 * 8 7 6 11 11 C 1.46939 * 120.70392 * 359.38719 * 10 8 7 12 12 C 1.52718 * 109.17542 * 234.11989 * 11 10 8 13 13 C 1.53169 * 109.35326 * 305.01188 * 12 11 10 14 14 C 1.52242 * 109.65038 * 60.03737 * 13 12 11 15 15 C 1.54480 * 110.28621 * 178.01179 * 14 13 12 16 16 C 1.55026 * 101.53205 * 276.21069 * 15 14 13 17 17 N 1.47489 * 104.90338 * 323.65561 * 16 15 14 18 18 C 1.36938 * 125.66169 * 203.99305 * 17 16 15 19 19 H 1.08002 * 120.00433 * 180.02562 * 18 17 16 20 20 C 1.38814 * 120.00218 * 0.02562 * 18 17 16 21 21 N 1.31620 * 119.99930 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00306 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.47141 * 89.99705 * 22 20 18 24 24 H 1.48500 * 109.47216 * 209.99790 * 22 20 18 25 25 H 1.48493 * 109.47277 * 330.00058 * 22 20 18 26 26 C 1.47180 * 108.67776 * 24.01112 * 17 16 15 27 27 C 1.47084 * 120.70666 * 179.65773 * 10 8 7 28 28 H 1.09001 * 109.47363 * 67.61149 * 1 2 3 29 29 H 1.09001 * 109.47217 * 187.61232 * 1 2 3 30 30 H 1.09005 * 109.47196 * 307.60720 * 1 2 3 31 31 H 1.08997 * 109.47035 * 240.00225 * 2 1 3 32 32 H 1.08998 * 109.47035 * 120.00088 * 2 1 3 33 33 H 1.07999 * 126.81087 * 180.25550 * 6 5 4 34 34 H 1.09000 * 109.56310 * 353.99738 * 11 10 8 35 35 H 1.08996 * 109.56516 * 114.34083 * 11 10 8 36 36 H 1.08995 * 109.57338 * 184.98092 * 12 11 10 37 37 H 1.09008 * 109.35713 * 64.91145 * 12 11 10 38 38 H 1.08999 * 109.43968 * 299.98650 * 13 12 11 39 39 H 1.08995 * 109.41161 * 180.02562 * 13 12 11 40 40 H 1.09004 * 111.01403 * 34.27103 * 15 14 13 41 41 H 1.08996 * 111.01278 * 158.14313 * 15 14 13 42 42 H 1.09003 * 110.35526 * 204.80098 * 16 15 14 43 43 H 1.08998 * 110.44664 * 82.55987 * 16 15 14 44 44 H 0.96998 * 120.00154 * 180.02562 * 21 20 18 45 45 H 1.08993 * 109.91501 * 239.10417 * 26 17 16 46 46 H 1.09007 * 109.90948 * 117.83519 * 26 17 16 47 47 H 1.08994 * 109.57847 * 247.34049 * 27 10 8 48 48 H 1.09003 * 109.57390 * 7.73409 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.3148 2.0795 -1.0399 5 7 2.7138 3.2526 -0.6990 6 6 2.6895 3.3609 0.6296 7 6 2.2408 2.1577 1.1070 8 6 2.0394 1.7782 2.5152 9 8 1.2144 0.9330 2.8053 10 7 2.7694 2.3675 3.4830 11 6 3.7797 3.3807 3.1488 12 6 5.1201 2.9718 3.7558 13 6 4.9479 2.7459 5.2610 14 6 3.9267 1.6422 5.4995 15 6 3.7782 1.3678 7.0125 16 6 4.9583 0.3956 7.2684 17 7 5.0338 -0.4374 6.0536 18 6 5.5760 -1.6927 5.9788 19 1 5.5834 -2.2225 5.0377 20 6 6.1162 -2.2841 7.1125 21 7 6.1077 -1.6383 8.2593 22 14 6.8552 -3.9967 7.0106 23 1 8.2992 -3.8938 6.6792 24 1 6.6950 -4.6835 8.3174 25 1 6.1592 -4.7741 5.9541 26 6 4.4300 0.3045 4.9351 27 6 2.5757 2.0056 4.8954 28 1 -0.3634 0.3914 -0.9502 29 1 -0.3634 -1.0186 0.1361 30 1 -0.3634 0.6272 0.8142 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.9643 4.2270 1.2134 34 1 3.8786 3.4543 2.0658 35 1 3.4775 4.3456 3.5558 36 1 5.8530 3.7608 3.5878 37 1 5.4631 2.0497 3.2863 38 1 4.6019 3.6675 5.7289 39 1 5.9042 2.4544 5.6953 40 1 3.8954 2.2852 7.5895 41 1 2.8234 0.8898 7.2311 42 1 4.7559 -0.2248 8.1415 43 1 5.8862 0.9508 7.4056 44 1 6.4855 -2.0514 9.0514 45 1 3.5953 -0.2615 4.5217 46 1 5.1778 0.4852 4.1628 47 1 2.1504 2.8522 5.4343 48 1 1.9029 1.1508 4.9644 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054129708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:49 Heat of formation + Delta-G solvation = 107.860530 kcal Electronic energy + Delta-G solvation = -30392.198396 eV Core-core repulsion = 26485.859169 eV Total energy + Delta-G solvation = -3906.339226 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.55737 -40.46275 -38.46460 -36.29317 -35.45787 -33.35417 -32.04573 -31.75434 -31.01096 -30.08734 -28.47820 -26.25442 -25.73679 -24.82431 -23.91703 -23.44931 -22.17565 -21.98645 -20.32918 -19.67205 -18.24443 -17.61801 -17.30439 -16.94677 -16.62638 -16.00558 -15.30142 -15.21405 -14.80130 -14.72259 -14.34800 -14.11760 -13.93362 -13.51420 -13.34357 -13.19245 -13.15800 -12.61833 -12.48989 -12.35150 -12.12079 -11.85102 -11.73785 -11.60529 -11.26546 -11.12654 -10.98634 -10.94311 -10.87222 -10.70762 -10.41793 -10.30140 -10.16690 -10.07510 -9.92492 -9.76060 -9.59195 -9.47348 -8.68643 -8.62447 -6.83022 -5.66558 -3.07365 0.79811 1.82883 2.10098 2.72348 2.91445 3.38427 3.43728 3.45459 3.99249 4.15015 4.41703 4.47829 4.59009 4.66024 4.68753 4.89746 4.93520 4.97505 5.08121 5.12930 5.21086 5.30268 5.34295 5.45099 5.49707 5.54219 5.65856 5.70053 5.78252 5.80160 5.81937 5.83745 5.92715 6.04664 6.19462 6.24864 6.30931 6.34923 6.41685 6.57020 6.64931 6.78144 6.90971 7.16932 7.49407 7.61458 7.84163 7.85494 8.15132 8.35256 9.21501 9.82393 10.47679 11.37426 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014122 B = 0.003575 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.297576 B = 7830.674289 C = 8799.410642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.109 3.891 3 N -0.252 5.252 4 N -0.063 5.063 5 N -0.274 5.274 6 C -0.016 4.016 7 C -0.057 4.057 8 C 0.591 3.409 9 O -0.530 6.530 10 N -0.586 5.586 11 C 0.079 3.921 12 C -0.137 4.137 13 C -0.100 4.100 14 C -0.085 4.085 15 C -0.134 4.134 16 C 0.155 3.845 17 N -0.603 5.603 18 C -0.221 4.221 19 H 0.075 0.925 20 C -0.010 4.010 21 N -0.922 5.922 22 Si 0.912 3.088 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.282 1.282 26 C 0.152 3.848 27 C 0.132 3.868 28 H 0.063 0.937 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.109 0.891 32 H 0.112 0.888 33 H 0.207 0.793 34 H 0.101 0.899 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.060 0.940 39 H 0.075 0.925 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.105 0.895 43 H 0.012 0.988 44 H 0.252 0.748 45 H 0.020 0.980 46 H 0.021 0.979 47 H 0.071 0.929 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.440 11.476 -11.511 18.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.011 4.011 3 N -0.049 5.049 4 N -0.043 5.043 5 N -0.137 5.137 6 C -0.176 4.176 7 C -0.192 4.192 8 C 0.376 3.624 9 O -0.406 6.406 10 N -0.318 5.318 11 C -0.044 4.044 12 C -0.175 4.175 13 C -0.137 4.137 14 C -0.086 4.086 15 C -0.173 4.173 16 C 0.030 3.970 17 N -0.329 5.329 18 C -0.349 4.349 19 H 0.092 0.908 20 C -0.206 4.206 21 N -0.571 5.571 22 Si 0.743 3.257 23 H -0.217 1.217 24 H -0.216 1.216 25 H -0.208 1.208 26 C 0.026 3.974 27 C 0.011 3.989 28 H 0.082 0.918 29 H 0.105 0.895 30 H 0.093 0.907 31 H 0.127 0.873 32 H 0.130 0.870 33 H 0.224 0.776 34 H 0.118 0.882 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.093 0.907 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.122 0.878 43 H 0.030 0.970 44 H 0.062 0.938 45 H 0.038 0.962 46 H 0.038 0.962 47 H 0.089 0.911 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.721 10.823 -12.772 18.876 hybrid contribution 0.512 -0.925 1.106 1.529 sum -8.209 9.898 -11.666 17.363 Atomic orbital electron populations 1.22105 0.92290 1.04441 1.03352 1.22314 0.97104 0.75458 1.06238 1.47914 1.40044 1.13618 1.03352 1.78243 1.14916 0.99480 1.11649 1.74904 1.16623 1.09717 1.12462 1.24180 1.03180 0.98286 0.91908 1.22020 1.11821 0.94305 0.91057 1.16702 0.81686 0.81504 0.82496 1.90835 1.34910 1.32192 1.82678 1.47830 1.36684 1.40262 1.06992 1.22447 0.88559 0.91034 1.02328 1.21910 0.95899 1.02549 0.97153 1.21352 1.00084 0.97405 0.94907 1.21375 0.93693 0.96257 0.97290 1.22991 1.01644 1.00104 0.92567 1.21914 0.91667 0.90714 0.92663 1.44544 1.69175 1.14893 1.04301 1.19053 1.30509 0.90182 0.95173 0.90759 1.24752 1.01465 0.98732 0.95620 1.69791 1.50953 1.36892 0.99480 0.86103 0.78969 0.83789 0.76837 1.21675 1.21616 1.20761 1.21250 0.95174 0.89603 0.91405 1.21726 0.97880 1.01474 0.77841 0.91795 0.89488 0.90661 0.87275 0.86954 0.77643 0.88170 0.90555 0.90565 0.90876 0.92147 0.90664 0.92051 0.91919 0.87752 0.97032 0.93772 0.96216 0.96174 0.91115 0.88536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 10.17 37.16 0.38 -1.06 16 2 C 0.11 1.07 6.43 -4.04 -0.03 1.04 16 3 N -0.25 -3.09 3.39 -57.37 -0.19 -3.29 16 4 N -0.06 -0.83 13.14 60.35 0.79 -0.04 16 5 N -0.27 -3.61 12.35 30.47 0.38 -3.23 16 6 C -0.02 -0.17 9.74 -17.35 -0.17 -0.34 16 7 C -0.06 -0.71 6.57 -82.34 -0.54 -1.25 16 8 C 0.59 8.06 7.51 -12.61 -0.09 7.97 16 9 O -0.53 -8.52 14.47 5.26 0.08 -8.44 16 10 N -0.59 -7.24 2.86 -174.75 -0.50 -7.74 16 11 C 0.08 0.75 5.44 -3.95 -0.02 0.73 16 12 C -0.14 -1.54 5.89 -26.79 -0.16 -1.70 16 13 C -0.10 -1.35 4.59 -27.03 -0.12 -1.47 16 14 C -0.08 -1.35 0.53 -154.09 -0.08 -1.43 16 15 C -0.13 -2.36 5.99 -24.88 -0.15 -2.50 16 16 C 0.16 3.63 5.57 -2.43 -0.01 3.61 16 17 N -0.60 -15.17 3.40 -170.22 -0.58 -15.75 16 18 C -0.22 -6.14 10.28 -15.06 -0.15 -6.30 16 19 H 0.07 2.03 7.83 -52.49 -0.41 1.62 16 20 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 21 N -0.92 -26.57 10.09 55.49 0.56 -26.01 16 22 Si 0.91 22.05 29.55 -169.99 -5.02 17.02 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 26 C 0.15 3.10 6.14 -3.32 -0.02 3.08 16 27 C 0.13 1.81 5.01 -4.04 -0.02 1.79 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.82 7.47 -51.93 -0.39 0.43 16 31 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.11 1.20 7.38 -51.93 -0.38 0.81 16 33 H 0.21 1.52 5.99 -52.49 -0.31 1.21 16 34 H 0.10 0.86 3.46 -51.93 -0.18 0.68 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.99 6.34 -51.92 -0.33 0.66 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 1.20 7.51 -51.93 -0.39 0.81 16 40 H 0.06 0.93 8.01 -51.93 -0.42 0.52 16 41 H 0.06 1.11 8.01 -51.93 -0.42 0.69 16 42 H 0.10 2.79 5.88 -51.93 -0.31 2.48 16 43 H 0.01 0.29 7.78 -51.93 -0.40 -0.11 16 44 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 45 H 0.02 0.44 7.66 -51.93 -0.40 0.04 16 46 H 0.02 0.42 6.01 -51.92 -0.31 0.11 16 47 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.10 1.53 6.82 -51.93 -0.35 1.17 16 LS Contribution 367.39 15.07 5.54 5.54 Total: -1.00 -32.72 367.39 -7.34 -40.07 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -7.10 Total: 0.08 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: -1.29 Total: 1.79 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: 0.46 Total: -56.06 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: 0.08 Total: -8.44 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.72 -7.34 -40.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054129708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.926 kcal (2) G-P(sol) polarization free energy of solvation -32.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds