Wall clock time and date at job start Tue Mar 31 2020 17:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 109.46722 * 2 1 4 4 N 1.28719 * 126.02986 * 267.41862 * 3 2 1 5 5 N 1.28516 * 110.63271 * 180.02562 * 4 3 2 6 6 C 1.33319 * 109.43999 * 0.02562 * 5 4 3 7 7 C 1.37007 * 106.37300 * 359.97438 * 6 5 4 8 8 C 1.47231 * 127.18727 * 180.02562 * 7 6 5 9 9 O 1.21622 * 119.99717 * 152.75930 * 8 7 6 10 10 N 1.34779 * 120.00287 * 332.75645 * 8 7 6 11 11 C 1.46939 * 120.70392 * 359.38719 * 10 8 7 12 12 C 1.52718 * 109.17542 * 234.11989 * 11 10 8 13 13 C 1.53169 * 109.35326 * 305.01188 * 12 11 10 14 14 C 1.52242 * 109.65038 * 60.03737 * 13 12 11 15 15 C 1.54480 * 110.28621 * 178.01179 * 14 13 12 16 16 C 1.55026 * 101.53205 * 276.21069 * 15 14 13 17 17 N 1.47489 * 104.90338 * 323.65561 * 16 15 14 18 18 C 1.36938 * 125.66169 * 203.99305 * 17 16 15 19 19 H 1.08002 * 120.00433 * 180.02562 * 18 17 16 20 20 C 1.38814 * 120.00218 * 0.02562 * 18 17 16 21 21 N 1.31620 * 119.99930 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00306 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.47141 * 89.99705 * 22 20 18 24 24 H 1.48500 * 109.47216 * 209.99790 * 22 20 18 25 25 H 1.48493 * 109.47277 * 330.00058 * 22 20 18 26 26 C 1.47180 * 108.67776 * 24.01112 * 17 16 15 27 27 C 1.47084 * 120.70666 * 179.65773 * 10 8 7 28 28 H 1.09001 * 109.47363 * 67.61149 * 1 2 3 29 29 H 1.09001 * 109.47217 * 187.61232 * 1 2 3 30 30 H 1.09005 * 109.47196 * 307.60720 * 1 2 3 31 31 H 1.08997 * 109.47035 * 240.00225 * 2 1 3 32 32 H 1.08998 * 109.47035 * 120.00088 * 2 1 3 33 33 H 1.07999 * 126.81087 * 180.25550 * 6 5 4 34 34 H 1.09000 * 109.56310 * 353.99738 * 11 10 8 35 35 H 1.08996 * 109.56516 * 114.34083 * 11 10 8 36 36 H 1.08995 * 109.57338 * 184.98092 * 12 11 10 37 37 H 1.09008 * 109.35713 * 64.91145 * 12 11 10 38 38 H 1.08999 * 109.43968 * 299.98650 * 13 12 11 39 39 H 1.08995 * 109.41161 * 180.02562 * 13 12 11 40 40 H 1.09004 * 111.01403 * 34.27103 * 15 14 13 41 41 H 1.08996 * 111.01278 * 158.14313 * 15 14 13 42 42 H 1.09003 * 110.35526 * 204.80098 * 16 15 14 43 43 H 1.08998 * 110.44664 * 82.55987 * 16 15 14 44 44 H 0.96998 * 120.00154 * 180.02562 * 21 20 18 45 45 H 1.08993 * 109.91501 * 239.10417 * 26 17 16 46 46 H 1.09007 * 109.90948 * 117.83519 * 26 17 16 47 47 H 1.08994 * 109.57847 * 247.34049 * 27 10 8 48 48 H 1.09003 * 109.57390 * 7.73409 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.3148 2.0795 -1.0399 5 7 2.7138 3.2526 -0.6990 6 6 2.6895 3.3609 0.6296 7 6 2.2408 2.1577 1.1070 8 6 2.0394 1.7782 2.5152 9 8 1.2144 0.9330 2.8053 10 7 2.7694 2.3675 3.4830 11 6 3.7797 3.3807 3.1488 12 6 5.1201 2.9718 3.7558 13 6 4.9479 2.7459 5.2610 14 6 3.9267 1.6422 5.4995 15 6 3.7782 1.3678 7.0125 16 6 4.9583 0.3956 7.2684 17 7 5.0338 -0.4374 6.0536 18 6 5.5760 -1.6927 5.9788 19 1 5.5834 -2.2225 5.0377 20 6 6.1162 -2.2841 7.1125 21 7 6.1077 -1.6383 8.2593 22 14 6.8552 -3.9967 7.0106 23 1 8.2992 -3.8938 6.6792 24 1 6.6950 -4.6835 8.3174 25 1 6.1592 -4.7741 5.9541 26 6 4.4300 0.3045 4.9351 27 6 2.5757 2.0056 4.8954 28 1 -0.3634 0.3914 -0.9502 29 1 -0.3634 -1.0186 0.1361 30 1 -0.3634 0.6272 0.8142 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.9643 4.2270 1.2134 34 1 3.8786 3.4543 2.0658 35 1 3.4775 4.3456 3.5558 36 1 5.8530 3.7608 3.5878 37 1 5.4631 2.0497 3.2863 38 1 4.6019 3.6675 5.7289 39 1 5.9042 2.4544 5.6953 40 1 3.8954 2.2852 7.5895 41 1 2.8234 0.8898 7.2311 42 1 4.7559 -0.2248 8.1415 43 1 5.8862 0.9508 7.4056 44 1 6.4855 -2.0514 9.0514 45 1 3.5953 -0.2615 4.5217 46 1 5.1778 0.4852 4.1628 47 1 2.1504 2.8522 5.4343 48 1 1.9029 1.1508 4.9644 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054129708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:48 Heat of formation + Delta-G solvation = 86.188416 kcal Electronic energy + Delta-G solvation = -30393.138169 eV Core-core repulsion = 26485.859169 eV Total energy + Delta-G solvation = -3907.279000 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -44.47769 -41.59408 -39.75328 -37.53701 -36.41731 -34.97411 -33.23792 -32.90295 -31.84002 -31.71124 -30.03463 -27.58366 -27.15662 -25.84353 -25.30739 -24.38670 -23.18890 -23.11876 -22.06172 -20.73093 -19.48411 -18.94474 -18.48466 -18.21427 -17.65415 -17.06317 -16.87662 -16.39229 -16.18352 -15.94754 -15.55079 -15.32231 -15.01328 -14.81316 -14.53104 -14.22442 -14.08595 -13.93695 -13.84868 -13.50308 -13.29487 -13.22050 -13.08296 -12.79743 -12.73277 -12.56819 -12.28064 -12.18784 -12.13731 -12.05098 -11.99362 -11.70407 -11.62107 -11.39307 -11.29324 -11.18533 -11.03137 -10.74399 -10.48768 -9.68130 -8.88704 -7.79843 -5.23305 -0.13788 0.94170 1.18511 1.42648 1.44047 1.52847 1.75585 1.95139 2.46502 3.09655 3.28719 3.30995 3.57860 3.64441 3.66468 3.81593 3.84979 3.86291 3.96193 4.09389 4.15124 4.18280 4.29209 4.34350 4.52847 4.57182 4.59615 4.65623 4.72079 4.76805 4.79576 4.82581 4.87393 4.90856 4.97731 5.05996 5.08792 5.18299 5.23218 5.31042 5.40731 5.42411 5.47582 5.52544 5.68646 5.83177 6.19150 6.30933 6.84532 7.10108 7.21899 7.77538 8.41267 9.21430 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014122 B = 0.003575 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.297576 B = 7830.674289 C = 8799.410642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.103 3.897 3 N -0.253 5.253 4 N -0.077 5.077 5 N -0.295 5.295 6 C 0.002 3.998 7 C -0.073 4.073 8 C 0.589 3.411 9 O -0.563 6.563 10 N -0.584 5.584 11 C 0.078 3.922 12 C -0.133 4.133 13 C -0.097 4.097 14 C -0.071 4.071 15 C -0.120 4.120 16 C 0.158 3.842 17 N -0.625 5.625 18 C -0.242 4.242 19 H 0.069 0.931 20 C -0.061 4.061 21 N -0.945 5.945 22 Si 0.976 3.024 23 H -0.285 1.285 24 H -0.289 1.289 25 H -0.274 1.274 26 C 0.153 3.847 27 C 0.140 3.860 28 H 0.071 0.929 29 H 0.103 0.897 30 H 0.052 0.948 31 H 0.131 0.869 32 H 0.098 0.902 33 H 0.245 0.755 34 H 0.112 0.888 35 H 0.119 0.881 36 H 0.107 0.893 37 H 0.040 0.960 38 H 0.098 0.902 39 H 0.044 0.956 40 H 0.097 0.903 41 H 0.060 0.940 42 H 0.067 0.933 43 H -0.009 1.009 44 H 0.248 0.752 45 H -0.002 1.002 46 H 0.015 0.985 47 H 0.108 0.892 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.831 13.891 -12.387 20.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.017 4.017 3 N -0.050 5.050 4 N -0.057 5.057 5 N -0.157 5.157 6 C -0.158 4.158 7 C -0.208 4.208 8 C 0.375 3.625 9 O -0.442 6.442 10 N -0.315 5.315 11 C -0.042 4.042 12 C -0.170 4.170 13 C -0.134 4.134 14 C -0.072 4.072 15 C -0.158 4.158 16 C 0.033 3.967 17 N -0.351 5.351 18 C -0.372 4.372 19 H 0.087 0.913 20 C -0.254 4.254 21 N -0.594 5.594 22 Si 0.804 3.196 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.199 1.199 26 C 0.028 3.972 27 C 0.018 3.982 28 H 0.090 0.910 29 H 0.122 0.878 30 H 0.071 0.929 31 H 0.149 0.851 32 H 0.117 0.883 33 H 0.260 0.740 34 H 0.129 0.871 35 H 0.137 0.863 36 H 0.125 0.875 37 H 0.059 0.941 38 H 0.116 0.884 39 H 0.063 0.937 40 H 0.115 0.885 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.009 0.991 44 H 0.057 0.943 45 H 0.016 0.984 46 H 0.033 0.967 47 H 0.126 0.874 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.105 13.268 -13.680 21.120 hybrid contribution 0.671 -1.719 1.375 2.302 sum -8.435 11.548 -12.304 18.866 Atomic orbital electron populations 1.22047 0.91456 1.05053 1.02773 1.22504 0.97780 0.74776 1.06633 1.48139 1.39499 1.14143 1.03245 1.78215 1.15547 0.99920 1.12056 1.74892 1.17378 1.09789 1.13621 1.24775 1.01212 0.98603 0.91223 1.22025 1.13128 0.95142 0.90538 1.16878 0.81452 0.81027 0.83132 1.90820 1.36502 1.33655 1.83200 1.47890 1.36936 1.40471 1.06154 1.22724 0.86617 0.91678 1.03206 1.21886 0.97826 1.02195 0.95142 1.21348 0.97647 0.97628 0.96813 1.21297 0.95785 0.94561 0.95586 1.22845 0.98658 0.99899 0.94441 1.21703 0.93168 0.90921 0.90929 1.44858 1.69127 1.14779 1.06366 1.19357 1.30887 0.91729 0.95177 0.91269 1.25545 1.02185 1.02320 0.95347 1.70046 1.51478 1.38109 0.99779 0.85125 0.78134 0.79563 0.76798 1.21244 1.21552 1.19922 1.21351 0.93918 0.91614 0.90309 1.21554 0.95617 1.02045 0.78983 0.90984 0.87808 0.92927 0.85071 0.88321 0.73955 0.87054 0.86279 0.87458 0.94103 0.88365 0.93734 0.88506 0.92132 0.91509 0.99110 0.94255 0.98358 0.96700 0.87375 0.91176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.67 10.17 71.98 0.73 -1.93 16 2 C 0.10 1.99 6.43 86.38 0.56 2.54 16 3 N -0.25 -6.00 3.39 -335.43 -1.14 -7.13 16 4 N -0.08 -1.98 13.14 37.02 0.49 -1.49 16 5 N -0.29 -7.18 12.35 -57.50 -0.71 -7.89 16 6 C 0.00 0.03 9.74 84.18 0.82 0.85 16 7 C -0.07 -1.71 6.57 40.41 0.27 -1.44 16 8 C 0.59 15.43 7.51 86.61 0.65 16.08 16 9 O -0.56 -18.27 14.47 -4.10 -0.06 -18.33 16 10 N -0.58 -12.95 2.86 -825.04 -2.36 -15.31 16 11 C 0.08 1.14 5.44 86.20 0.47 1.61 16 12 C -0.13 -2.55 5.89 30.56 0.18 -2.37 16 13 C -0.10 -2.34 4.59 30.40 0.14 -2.20 16 14 C -0.07 -2.16 0.53 -51.91 -0.03 -2.18 16 15 C -0.12 -4.09 5.99 31.79 0.19 -3.90 16 16 C 0.16 7.60 5.57 86.88 0.48 8.09 16 17 N -0.63 -32.72 3.40 -692.47 -2.36 -35.08 16 18 C -0.24 -14.01 10.28 84.03 0.86 -13.15 16 19 H 0.07 3.94 7.83 -2.91 -0.02 3.91 16 20 C -0.06 -3.51 5.49 84.86 0.47 -3.05 16 21 N -0.94 -56.34 10.09 21.65 0.22 -56.12 16 22 Si 0.98 46.35 29.55 68.60 2.03 48.38 16 23 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 24 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 25 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 26 C 0.15 6.45 6.14 86.47 0.53 6.98 16 27 C 0.14 3.51 5.01 86.06 0.43 3.95 16 28 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.10 1.39 8.14 -2.39 -0.02 1.38 16 30 H 0.05 1.16 7.47 -2.38 -0.02 1.14 16 31 H 0.13 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.10 2.19 7.38 -2.39 -0.02 2.17 16 33 H 0.24 2.40 5.99 -2.91 -0.02 2.38 16 34 H 0.11 1.41 3.46 -2.39 -0.01 1.40 16 35 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.11 1.46 8.14 -2.39 -0.02 1.45 16 37 H 0.04 1.06 6.34 -2.38 -0.02 1.04 16 38 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.04 1.37 7.51 -2.39 -0.02 1.35 16 40 H 0.10 2.65 8.01 -2.38 -0.02 2.63 16 41 H 0.06 2.10 8.01 -2.39 -0.02 2.08 16 42 H 0.07 3.74 5.88 -2.39 -0.01 3.72 16 43 H -0.01 -0.47 7.78 -2.39 -0.02 -0.48 16 44 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 45 H 0.00 -0.07 7.66 -2.39 -0.02 -0.09 16 46 H 0.02 0.65 6.01 -2.38 -0.01 0.64 16 47 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 48 H 0.07 2.18 6.82 -2.39 -0.02 2.17 16 Total: -1.00 -76.41 367.39 3.84 -72.58 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: 0.98 Total: 10.53 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: 6.75 Total: 9.87 kcal Atomic # 7 Polarization: -117.17 SS G_CDS: -5.86 Total: -123.02 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -0.06 Total: -18.33 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -76.41 3.84 -72.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054129708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.766 kcal (2) G-P(sol) polarization free energy of solvation -76.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds