Wall clock time and date at job start Tue Mar 31 2020 17:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47289 * 2 1 4 4 C 1.35313 * 125.86639 * 124.99350 * 3 2 1 5 5 C 1.35352 * 106.16994 * 180.02562 * 4 3 2 6 6 C 1.50706 * 126.75024 * 179.97438 * 5 4 3 7 7 C 1.50703 * 109.46957 * 125.00307 * 6 5 4 8 8 O 1.21281 * 120.00281 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99870 * 179.97438 * 7 6 5 10 10 C 1.46493 * 119.99960 * 179.97438 * 9 7 6 11 11 H 1.08996 * 112.88971 * 336.34765 * 10 9 7 12 12 C 1.53954 * 113.66267 * 107.81465 * 10 9 7 13 13 C 1.53954 * 87.29381 * 89.73710 * 12 10 9 14 14 H 1.09003 * 113.65829 * 139.20527 * 13 12 10 15 15 N 1.46496 * 113.74871 * 270.24786 * 13 12 10 16 16 C 1.36935 * 120.00154 * 252.22897 * 15 13 12 17 17 H 1.07997 * 120.00151 * 0.02562 * 16 15 13 18 18 C 1.38819 * 119.99724 * 180.02562 * 16 15 13 19 19 N 1.31612 * 120.00183 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99721 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47038 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47192 * 119.99913 * 20 18 16 23 23 H 1.48505 * 109.46876 * 239.99708 * 20 18 16 24 24 C 1.52907 * 113.66477 * 205.00136 * 10 9 7 25 25 C 1.52904 * 121.14012 * 144.70892 * 24 10 9 26 26 C 1.53948 * 86.78463 * 209.38132 * 25 24 10 27 27 C 1.52911 * 121.13847 * 36.14620 * 24 10 9 28 28 N 1.33764 * 106.50039 * 0.02562 * 5 4 3 29 29 N 1.28635 * 108.88742 * 359.73708 * 28 5 4 30 30 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00146 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00128 * 1 2 3 33 33 H 1.08998 * 109.47533 * 119.99674 * 2 1 3 34 34 H 1.08996 * 109.47853 * 240.00016 * 2 1 3 35 35 H 1.07998 * 126.91830 * 0.02792 * 4 3 2 36 36 H 1.08997 * 109.47134 * 245.00201 * 6 5 4 37 37 H 1.09002 * 109.47102 * 5.00494 * 6 5 4 38 38 H 0.97005 * 119.99946 * 0.02562 * 9 7 6 39 39 H 1.08997 * 113.58085 * 204.33970 * 12 10 9 40 40 H 1.08997 * 113.57729 * 335.13913 * 12 10 9 41 41 H 0.97005 * 119.99879 * 72.23296 * 15 13 12 42 42 H 0.97005 * 120.00106 * 179.97438 * 19 18 16 43 43 H 1.09003 * 113.66404 * 323.85516 * 25 24 10 44 44 H 1.09007 * 113.66654 * 94.91084 * 25 24 10 45 45 H 1.08999 * 113.58009 * 270.12631 * 26 25 24 46 46 H 1.09005 * 113.65178 * 139.34880 * 26 25 24 47 47 H 1.09004 * 113.66557 * 265.09471 * 27 24 10 48 48 H 1.09008 * 113.65881 * 36.05269 * 27 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.8755 1.9191 0.8983 5 6 3.0533 3.2079 0.5249 6 6 3.9217 4.2329 1.2078 7 6 4.8932 4.8119 0.2117 8 8 4.8812 4.4301 -0.9394 9 7 5.7747 5.7547 0.5998 10 6 6.7194 6.3170 -0.3682 11 1 6.9071 5.6533 -1.2122 12 6 6.3951 7.7650 -0.7786 13 6 7.2765 8.2190 0.3991 14 1 7.9092 9.0757 0.1672 15 7 6.5439 8.3759 1.6581 16 6 6.2961 9.6278 2.1545 17 1 6.6402 10.4995 1.6178 18 6 5.6023 9.7764 3.3477 19 7 5.1825 8.7141 4.0016 20 14 5.2636 11.4842 4.0246 21 1 5.8356 12.5025 3.1076 22 1 3.7974 11.6891 4.1399 23 1 5.8890 11.6184 5.3648 24 6 7.9927 6.8742 0.2692 25 6 9.3443 6.7633 -0.4369 26 6 9.9773 6.7349 0.9661 27 6 8.6305 6.1977 1.4832 28 7 2.3056 3.3931 -0.5687 29 7 1.7090 2.2906 -0.8569 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 3.3271 1.4204 1.7432 36 1 3.2958 5.0295 1.6099 37 1 4.4731 3.7590 2.0198 38 1 5.7840 6.0603 1.5204 39 1 6.7947 8.0416 -1.7543 40 1 5.3433 8.0260 -0.6620 41 1 6.2345 7.5930 2.1400 42 1 4.6980 8.8180 4.8355 43 1 9.4723 5.8348 -0.9934 44 1 9.6082 7.6469 -1.0181 45 1 10.2293 7.7231 1.3509 46 1 10.7967 6.0224 1.0619 47 1 8.3240 6.6295 2.4360 48 1 8.5563 5.1103 1.4672 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078685607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:36 Heat of formation + Delta-G solvation = 98.172005 kcal Electronic energy + Delta-G solvation = -28970.813955 eV Core-core repulsion = 25064.054602 eV Total energy + Delta-G solvation = -3906.759352 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.18631 -41.90607 -39.98197 -36.64650 -36.38503 -35.32879 -33.98003 -33.34513 -31.74819 -31.64370 -29.18623 -26.73494 -26.20693 -25.54133 -25.42793 -24.27801 -22.87843 -22.32231 -21.48645 -21.09418 -19.67220 -18.73982 -18.23983 -17.92759 -17.23264 -17.03323 -16.65685 -16.33828 -16.11454 -15.90595 -15.55834 -15.36776 -15.27228 -14.83645 -14.53907 -14.33341 -13.90655 -13.63137 -13.47128 -13.31184 -13.22164 -13.06419 -12.97139 -12.82436 -12.67705 -12.64964 -12.49639 -12.30514 -12.10443 -11.89110 -11.80195 -11.64504 -11.26129 -11.14337 -10.95878 -10.86630 -10.76885 -10.62346 -10.09911 -9.78324 -8.95985 -7.92653 -5.18680 0.69914 1.47897 1.49193 1.51316 1.59192 1.59396 1.71382 2.30828 2.58571 3.33025 3.40063 3.45198 3.65581 3.74747 3.84148 3.92308 3.96537 3.99061 4.02985 4.07416 4.20100 4.25320 4.30266 4.32708 4.44414 4.58001 4.62435 4.69898 4.75140 4.75757 4.85091 4.91091 4.94578 5.01328 5.02682 5.12728 5.16360 5.16548 5.24302 5.26787 5.30785 5.56639 5.63724 5.66219 5.77338 5.78005 6.31412 6.64151 7.33082 7.39163 7.59303 8.10891 8.36454 9.30262 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.011401 B = 0.003079 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2455.333067 B = 9090.520333 C =10748.288054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.101 3.899 3 N -0.287 5.287 4 C -0.025 4.025 5 C -0.030 4.030 6 C -0.051 4.051 7 C 0.516 3.484 8 O -0.574 6.574 9 N -0.697 5.697 10 C 0.141 3.859 11 H 0.087 0.913 12 C -0.182 4.182 13 C 0.179 3.821 14 H 0.062 0.938 15 N -0.706 5.706 16 C -0.241 4.241 17 H 0.072 0.928 18 C -0.064 4.064 19 N -0.958 5.958 20 Si 0.965 3.035 21 H -0.272 1.272 22 H -0.298 1.298 23 H -0.293 1.293 24 C -0.118 4.118 25 C -0.096 4.096 26 C -0.127 4.127 27 C -0.124 4.124 28 N -0.296 5.296 29 N -0.125 5.125 30 H 0.112 0.888 31 H 0.049 0.951 32 H 0.056 0.944 33 H 0.146 0.854 34 H 0.108 0.892 35 H 0.242 0.758 36 H 0.109 0.891 37 H 0.151 0.849 38 H 0.405 0.595 39 H 0.097 0.903 40 H 0.039 0.961 41 H 0.376 0.624 42 H 0.252 0.748 43 H 0.097 0.903 44 H 0.077 0.923 45 H 0.070 0.930 46 H 0.084 0.916 47 H 0.051 0.949 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.951 -19.942 -3.016 20.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.017 4.017 3 N -0.081 5.081 4 C -0.177 4.177 5 C -0.170 4.170 6 C -0.092 4.092 7 C 0.303 3.697 8 O -0.454 6.454 9 N -0.349 5.349 10 C 0.036 3.964 11 H 0.105 0.895 12 C -0.224 4.224 13 C 0.068 3.932 14 H 0.080 0.920 15 N -0.346 5.346 16 C -0.372 4.372 17 H 0.090 0.910 18 C -0.257 4.257 19 N -0.608 5.608 20 Si 0.795 3.205 21 H -0.197 1.197 22 H -0.225 1.225 23 H -0.220 1.220 24 C -0.120 4.120 25 C -0.134 4.134 26 C -0.164 4.164 27 C -0.161 4.161 28 N -0.162 5.162 29 N -0.104 5.104 30 H 0.131 0.869 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.164 0.836 34 H 0.126 0.874 35 H 0.258 0.742 36 H 0.127 0.873 37 H 0.169 0.831 38 H 0.242 0.758 39 H 0.115 0.885 40 H 0.058 0.942 41 H 0.211 0.789 42 H 0.061 0.939 43 H 0.116 0.884 44 H 0.096 0.904 45 H 0.089 0.911 46 H 0.102 0.898 47 H 0.070 0.930 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.067 -19.727 -5.072 20.369 hybrid contribution -0.282 0.931 1.783 2.031 sum -0.214 -18.795 -3.289 19.082 Atomic orbital electron populations 1.22065 0.92645 1.04983 1.02467 1.22597 0.97059 0.74385 1.07690 1.47885 1.29873 1.12953 1.17437 1.23990 0.99187 0.94099 1.00388 1.21595 1.02885 0.95825 0.96723 1.19953 0.94970 0.97362 0.96925 1.20866 0.80950 0.78783 0.89127 1.90674 1.71231 1.62267 1.21188 1.45747 1.35267 1.40039 1.13840 1.21568 0.89439 0.93559 0.91880 0.89514 1.24229 1.00282 0.97228 1.00685 1.21036 0.91766 0.94533 0.85851 0.91959 1.42154 1.65112 1.04896 1.22428 1.19595 1.28435 0.86153 1.03065 0.91028 1.25358 1.01774 1.00106 0.98491 1.69730 1.44498 1.28646 1.17933 0.85204 0.76775 0.80634 0.77886 1.19711 1.22539 1.21993 1.23407 0.93269 0.96786 0.98574 1.22551 0.91332 1.03026 0.96509 1.22706 0.96383 1.01346 0.96013 1.22556 0.96861 0.99730 0.96992 1.75052 1.09454 1.17214 1.14478 1.78167 1.22323 0.93493 1.16410 0.86944 0.93185 0.92484 0.83563 0.87405 0.74214 0.87319 0.83095 0.75752 0.88487 0.94215 0.78868 0.93914 0.88447 0.90431 0.91133 0.89769 0.93017 0.89533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 10.04 71.98 0.72 -0.87 16 2 C 0.10 0.96 7.17 86.38 0.62 1.58 16 3 N -0.29 -6.15 3.44 -347.73 -1.20 -7.35 16 4 C -0.02 -0.49 11.49 83.49 0.96 0.47 16 5 C -0.03 -0.91 6.00 41.60 0.25 -0.66 16 6 C -0.05 -1.41 6.28 29.10 0.18 -1.23 16 7 C 0.52 18.35 7.82 87.66 0.69 19.03 16 8 O -0.57 -24.80 15.20 -3.03 -0.05 -24.84 16 9 N -0.70 -24.26 4.93 -441.17 -2.18 -26.43 16 10 C 0.14 4.85 4.12 45.28 0.19 5.04 16 11 H 0.09 3.05 7.46 -2.39 -0.02 3.03 16 12 C -0.18 -6.79 7.69 31.23 0.24 -6.55 16 13 C 0.18 6.89 4.36 45.28 0.20 7.09 16 14 H 0.06 2.41 8.10 -2.39 -0.02 2.39 16 15 N -0.71 -33.11 4.74 -321.56 -1.52 -34.63 16 16 C -0.24 -12.78 9.97 84.04 0.84 -11.94 16 17 H 0.07 3.74 7.83 -2.91 -0.02 3.72 16 18 C -0.06 -3.50 5.50 84.86 0.47 -3.03 16 19 N -0.96 -54.27 13.06 21.65 0.28 -53.99 16 20 Si 0.96 44.97 29.55 68.60 2.03 46.99 16 21 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 22 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 23 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 24 C -0.12 -3.66 0.78 -52.32 -0.04 -3.70 16 25 C -0.10 -2.33 7.84 30.88 0.24 -2.08 16 26 C -0.13 -3.14 8.08 31.23 0.25 -2.89 16 27 C -0.12 -3.63 7.27 30.88 0.22 -3.41 16 28 N -0.30 -11.20 11.82 -48.60 -0.57 -11.77 16 29 N -0.12 -4.03 12.92 37.02 0.48 -3.56 16 30 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.05 0.75 8.12 -2.39 -0.02 0.73 16 32 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 33 H 0.15 0.18 8.07 -2.39 -0.02 0.16 16 34 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.24 1.93 8.06 -2.91 -0.02 1.91 16 36 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 37 H 0.15 2.78 8.12 -2.39 -0.02 2.76 16 38 H 0.41 14.51 6.14 -92.70 -0.57 13.94 16 39 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 40 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.38 18.03 5.14 -92.70 -0.48 17.55 16 42 H 0.25 13.92 8.31 -92.70 -0.77 13.15 16 43 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 45 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 46 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 47 H 0.05 1.83 7.58 -2.39 -0.02 1.81 16 48 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 Total: -1.00 -79.15 393.90 3.23 -75.92 By element: Atomic # 1 Polarization: 42.86 SS G_CDS: -0.07 Total: 42.79 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: 6.03 Total: -3.14 kcal Atomic # 7 Polarization: -133.02 SS G_CDS: -4.71 Total: -137.73 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: -0.05 Total: -24.84 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Total: -79.15 3.23 -75.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078685607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.096 kcal (2) G-P(sol) polarization free energy of solvation -79.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds