Wall clock time and date at job start Tue Mar 31 2020 17:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.47055 * 2 1 4 4 N 1.28713 * 126.03608 * 266.20240 * 3 2 1 5 5 N 1.28512 * 110.64183 * 179.97438 * 4 3 2 6 6 C 1.33325 * 109.43803 * 359.72829 * 5 4 3 7 7 C 1.50701 * 126.81581 * 180.27901 * 6 5 4 8 8 C 1.37013 * 106.37057 * 0.42668 * 6 5 4 9 9 C 1.47235 * 127.18722 * 179.84719 * 8 6 5 10 10 O 1.21617 * 119.99799 * 86.26767 * 9 8 6 11 11 N 1.34775 * 119.99659 * 266.26017 * 9 8 6 12 12 C 1.48102 * 125.74297 * 184.99213 * 11 9 8 13 13 C 1.53561 * 103.43779 * 204.30903 * 12 11 9 14 14 H 1.08998 * 108.15720 * 73.52021 * 13 12 11 15 15 C 1.49844 * 114.52137 * 195.45376 * 13 12 11 16 16 C 1.51339 * 114.40666 * 66.32308 * 15 13 12 17 17 N 1.44530 * 113.16494 * 35.18902 * 16 15 13 18 18 C 1.36929 * 117.27339 * 150.82722 * 17 16 15 19 19 H 1.07998 * 120.00511 * 324.84362 * 18 17 16 20 20 C 1.38814 * 120.00019 * 144.84727 * 18 17 16 21 21 N 1.31625 * 120.00236 * 162.34129 * 20 18 17 22 22 Si 1.86795 * 120.00088 * 342.34250 * 20 18 17 23 23 H 1.48503 * 109.47393 * 89.37746 * 22 20 18 24 24 H 1.48501 * 109.47346 * 209.38041 * 22 20 18 25 25 H 1.48502 * 109.47017 * 329.38027 * 22 20 18 26 26 C 1.44416 * 125.45328 * 330.85132 * 17 16 15 27 27 C 1.52987 * 113.17478 * 34.68338 * 26 17 16 28 28 H 1.09002 * 112.80907 * 84.24403 * 27 26 17 29 29 C 1.47467 * 125.74799 * 4.95890 * 11 9 8 30 30 H 1.08999 * 109.46896 * 184.87697 * 1 2 3 31 31 H 1.08997 * 109.47087 * 304.88549 * 1 2 3 32 32 H 1.09002 * 109.46963 * 64.88594 * 1 2 3 33 33 H 1.08995 * 109.47668 * 239.99766 * 2 1 3 34 34 H 1.09000 * 109.47073 * 119.99787 * 2 1 3 35 35 H 1.08997 * 109.46755 * 270.17693 * 7 6 5 36 36 H 1.08991 * 109.47139 * 30.17861 * 7 6 5 37 37 H 1.08998 * 109.46888 * 150.18026 * 7 6 5 38 38 H 1.08998 * 110.63173 * 322.88013 * 12 11 9 39 39 H 1.08994 * 110.62921 * 85.75474 * 12 11 9 40 40 H 1.09000 * 108.47155 * 305.09952 * 15 13 12 41 41 H 1.08998 * 108.47565 * 187.54596 * 15 13 12 42 42 H 1.08997 * 108.74712 * 156.14382 * 16 15 13 43 43 H 1.09005 * 108.74710 * 274.36252 * 16 15 13 44 44 H 0.96993 * 119.99933 * 179.97438 * 21 20 18 45 45 H 1.09000 * 108.74174 * 155.63550 * 26 17 16 46 46 H 1.08991 * 108.74191 * 273.84505 * 26 17 16 47 47 H 1.09002 * 110.04009 * 62.82548 * 29 11 9 48 48 H 1.08996 * 110.03621 * 301.37372 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.3357 2.0721 -1.0386 5 7 2.7269 3.2480 -0.6982 6 6 2.6692 3.3681 0.6284 7 6 3.0325 4.5837 1.4417 8 6 2.2173 2.1660 1.1057 9 6 1.9875 1.7966 2.5123 10 8 0.9223 2.0504 3.0414 11 7 2.9576 1.1770 3.2134 12 6 2.8296 0.6573 4.5943 13 6 4.2770 0.6473 5.1074 14 1 4.5758 1.6775 5.3010 15 6 4.4920 -0.1677 6.3463 16 6 4.2893 -1.6557 6.1589 17 7 4.7162 -2.1287 4.8616 18 6 5.1558 -3.4229 4.7791 19 1 5.7036 -3.8607 5.6004 20 6 4.8973 -4.1724 3.6396 21 7 5.5909 -5.2649 3.3991 22 14 3.5651 -3.6306 2.4476 23 1 4.1510 -2.7206 1.4306 24 1 2.9899 -4.8219 1.7730 25 1 2.4953 -2.9182 3.1914 26 6 4.7184 -1.3503 3.6452 27 6 5.0474 0.1259 3.8757 28 1 6.1195 0.3190 3.9138 29 6 4.3249 0.9018 2.7344 30 1 -0.3633 -1.0239 0.0874 31 1 -0.3633 0.5877 0.8430 32 1 -0.3633 0.4362 -0.9305 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 4.0886 4.5404 1.7078 36 1 2.8419 5.4829 0.8561 37 1 2.4298 4.6067 2.3496 38 1 2.2112 1.3210 5.1987 39 1 2.4163 -0.3512 4.5883 40 1 3.8007 0.1810 7.1134 41 1 5.5099 0.0005 6.6981 42 1 4.8521 -2.1855 6.9275 43 1 3.2304 -1.8832 6.2816 44 1 5.4100 -5.7888 2.6031 45 1 5.4559 -1.7708 2.9616 46 1 3.7338 -1.4199 3.1831 47 1 4.8452 1.8379 2.5317 48 1 4.2887 0.2910 1.8324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087991522.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:52 Heat of formation + Delta-G solvation = 93.825079 kcal Electronic energy + Delta-G solvation = -30950.586181 eV Core-core repulsion = 27043.638332 eV Total energy + Delta-G solvation = -3906.947849 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.44405 -40.57563 -38.61887 -35.87460 -35.83409 -33.38523 -32.79310 -31.47571 -31.31150 -30.87939 -28.44729 -27.70338 -25.76201 -25.06303 -24.57694 -23.04615 -22.17801 -21.55252 -21.41450 -19.65711 -18.59787 -17.79369 -16.90123 -16.80282 -16.70393 -16.22187 -15.66956 -15.30317 -14.90324 -14.60756 -14.35911 -13.92534 -13.85315 -13.72137 -13.64837 -13.31863 -13.05909 -12.93969 -12.91021 -12.76032 -12.50638 -12.38655 -12.35437 -12.06791 -11.82723 -11.71294 -11.29770 -11.16051 -11.09009 -10.78725 -10.66127 -10.46333 -10.33094 -10.23733 -10.09082 -9.78373 -9.61292 -9.32394 -8.84437 -8.70107 -6.94019 -6.10543 -3.55746 1.10306 1.68379 2.23723 2.37067 2.75936 3.13227 3.30413 3.34424 3.94719 4.13587 4.32673 4.36657 4.43881 4.49159 4.62976 4.68920 4.80476 4.82310 4.95599 5.09493 5.15849 5.23265 5.24859 5.34594 5.36843 5.39411 5.45406 5.51313 5.52117 5.60486 5.68685 5.71289 5.72570 5.84188 5.86413 5.92965 5.98966 6.04706 6.20480 6.24906 6.29051 6.41727 6.55855 6.62903 6.76546 7.19364 7.75388 7.97408 8.24082 8.26851 8.94023 9.61370 9.88880 11.05491 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.012976 B = 0.004941 C = 0.004097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.337431 B = 5665.010356 C = 6833.044829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.102 3.898 3 N -0.264 5.264 4 N -0.063 5.063 5 N -0.269 5.269 6 C 0.024 3.976 7 C -0.071 4.071 8 C -0.055 4.055 9 C 0.610 3.390 10 O -0.520 6.520 11 N -0.602 5.602 12 C 0.113 3.887 13 C -0.085 4.085 14 H 0.072 0.928 15 C -0.116 4.116 16 C 0.160 3.840 17 N -0.598 5.598 18 C -0.277 4.277 19 H 0.083 0.917 20 C 0.035 3.965 21 N -0.903 5.903 22 Si 0.883 3.117 23 H -0.288 1.288 24 H -0.301 1.301 25 H -0.273 1.273 26 C 0.147 3.853 27 C -0.106 4.106 28 H 0.106 0.894 29 C 0.099 3.901 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.117 0.883 34 H 0.102 0.898 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.053 0.947 43 H 0.013 0.987 44 H 0.264 0.736 45 H 0.065 0.935 46 H 0.010 0.990 47 H 0.072 0.928 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.034 15.078 -1.481 15.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.018 4.018 3 N -0.061 5.061 4 N -0.042 5.042 5 N -0.134 5.134 6 C -0.116 4.116 7 C -0.130 4.130 8 C -0.190 4.190 9 C 0.394 3.606 10 O -0.394 6.394 11 N -0.335 5.335 12 C -0.008 4.008 13 C -0.104 4.104 14 H 0.091 0.909 15 C -0.154 4.154 16 C 0.034 3.966 17 N -0.322 5.322 18 C -0.406 4.406 19 H 0.101 0.899 20 C -0.166 4.166 21 N -0.545 5.545 22 Si 0.713 3.287 23 H -0.216 1.216 24 H -0.229 1.229 25 H -0.199 1.199 26 C 0.021 3.979 27 C -0.126 4.126 28 H 0.124 0.876 29 C -0.024 4.024 30 H 0.108 0.892 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.135 0.865 34 H 0.120 0.880 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.072 0.928 43 H 0.031 0.969 44 H 0.074 0.926 45 H 0.083 0.917 46 H 0.027 0.973 47 H 0.090 0.910 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.568 15.080 -2.869 16.329 hybrid contribution -0.809 -0.134 0.121 0.829 sum -6.377 14.946 -2.749 16.480 Atomic orbital electron populations 1.22188 0.92192 1.04486 1.03995 1.22323 0.97111 0.75894 1.06489 1.47825 1.41483 1.13244 1.03579 1.78177 1.14874 0.99576 1.11550 1.74810 1.17354 1.09512 1.11722 1.22107 1.02794 0.95434 0.91239 1.20159 1.02259 0.92505 0.98046 1.21744 1.12862 0.94185 0.90172 1.16343 0.83208 0.77927 0.83148 1.90847 1.24823 1.53528 1.70203 1.48670 1.12455 1.55959 1.16465 1.22334 0.98042 0.99933 0.80531 1.21125 0.93821 0.99861 0.95583 0.90926 1.20694 1.02141 0.96820 0.95779 1.20005 0.97213 0.91238 0.88133 1.43006 1.75460 1.10388 1.03325 1.18984 1.30052 0.86930 1.04630 0.89923 1.25431 0.97669 0.95363 0.98089 1.69803 1.39842 1.17430 1.27449 0.86959 0.84189 0.76540 0.80986 1.21564 1.22944 1.19879 1.20847 0.98456 0.88602 0.90023 1.22883 0.99604 0.97337 0.92757 0.87589 1.22625 0.81561 0.99946 0.98264 0.89192 0.91000 0.90984 0.86470 0.87973 0.90113 0.89807 0.90497 0.89939 0.90061 0.91722 0.91538 0.92821 0.96943 0.92589 0.91656 0.97252 0.90952 0.91519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.76 10.24 37.16 0.38 -1.38 16 2 C 0.10 1.21 6.90 -4.04 -0.03 1.18 16 3 N -0.26 -3.72 3.39 -57.37 -0.19 -3.92 16 4 N -0.06 -0.96 13.14 60.35 0.79 -0.16 16 5 N -0.27 -4.11 12.35 33.52 0.41 -3.69 16 6 C 0.02 0.33 7.30 -82.39 -0.60 -0.27 16 7 C -0.07 -0.71 10.28 36.01 0.37 -0.34 16 8 C -0.06 -0.80 5.93 -82.33 -0.49 -1.29 16 9 C 0.61 9.25 7.02 -12.61 -0.09 9.16 16 10 O -0.52 -9.12 17.37 5.26 0.09 -9.03 16 11 N -0.60 -8.59 3.33 -170.87 -0.57 -9.16 16 12 C 0.11 1.59 5.86 -2.87 -0.02 1.58 16 13 C -0.08 -1.10 2.65 -91.18 -0.24 -1.34 16 14 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 15 C -0.12 -1.54 5.46 -29.13 -0.16 -1.70 16 16 C 0.16 2.84 5.94 -5.93 -0.04 2.80 16 17 N -0.60 -12.92 2.84 -177.44 -0.50 -13.43 16 18 C -0.28 -7.28 9.60 -15.06 -0.14 -7.42 16 19 H 0.08 2.34 7.99 -52.49 -0.42 1.93 16 20 C 0.03 0.95 5.13 -17.43 -0.09 0.86 16 21 N -0.90 -26.52 13.97 55.49 0.78 -25.75 16 22 Si 0.88 21.08 24.04 -169.99 -4.09 16.99 16 23 H -0.29 -6.50 6.94 56.52 0.39 -6.11 16 24 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 25 H -0.27 -6.44 6.77 56.52 0.38 -6.06 16 26 C 0.15 2.86 2.89 -5.16 -0.01 2.84 16 27 C -0.11 -1.54 3.99 -88.44 -0.35 -1.89 16 28 H 0.11 1.41 8.14 -51.93 -0.42 0.99 16 29 C 0.10 1.33 5.62 -2.04 -0.01 1.32 16 30 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.10 1.30 7.98 -51.93 -0.41 0.89 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.08 0.76 8.02 -51.93 -0.42 0.34 16 38 H 0.08 1.09 8.02 -51.93 -0.42 0.67 16 39 H 0.08 1.34 7.10 -51.93 -0.37 0.97 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.05 0.97 7.86 -51.93 -0.41 0.56 16 43 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 44 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 45 H 0.07 1.42 6.54 -51.93 -0.34 1.08 16 46 H 0.01 0.21 3.81 -51.93 -0.20 0.01 16 47 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.07 0.97 7.74 -51.93 -0.40 0.56 16 LS Contribution 377.16 15.07 5.68 5.68 Total: -1.00 -32.05 377.16 -6.74 -38.79 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -7.62 Total: -0.44 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: -1.52 Total: 4.11 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: 0.71 Total: -56.10 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.09 Total: -9.03 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.09 Total: 16.99 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.05 -6.74 -38.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087991522.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.614 kcal (2) G-P(sol) polarization free energy of solvation -32.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds