Wall clock time and date at job start Tue Mar 31 2020 17:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.47055 * 2 1 4 4 N 1.28713 * 126.03608 * 266.20240 * 3 2 1 5 5 N 1.28512 * 110.64183 * 179.97438 * 4 3 2 6 6 C 1.33325 * 109.43803 * 359.72829 * 5 4 3 7 7 C 1.50701 * 126.81581 * 180.27901 * 6 5 4 8 8 C 1.37013 * 106.37057 * 0.42668 * 6 5 4 9 9 C 1.47235 * 127.18722 * 179.84719 * 8 6 5 10 10 O 1.21617 * 119.99799 * 86.26767 * 9 8 6 11 11 N 1.34775 * 119.99659 * 266.26017 * 9 8 6 12 12 C 1.48102 * 125.74297 * 184.99213 * 11 9 8 13 13 C 1.53561 * 103.43779 * 204.30903 * 12 11 9 14 14 H 1.08998 * 108.15720 * 73.52021 * 13 12 11 15 15 C 1.49844 * 114.52137 * 195.45376 * 13 12 11 16 16 C 1.51339 * 114.40666 * 66.32308 * 15 13 12 17 17 N 1.44530 * 113.16494 * 35.18902 * 16 15 13 18 18 C 1.36929 * 117.27339 * 150.82722 * 17 16 15 19 19 H 1.07998 * 120.00511 * 324.84362 * 18 17 16 20 20 C 1.38814 * 120.00019 * 144.84727 * 18 17 16 21 21 N 1.31625 * 120.00236 * 162.34129 * 20 18 17 22 22 Si 1.86795 * 120.00088 * 342.34250 * 20 18 17 23 23 H 1.48503 * 109.47393 * 89.37746 * 22 20 18 24 24 H 1.48501 * 109.47346 * 209.38041 * 22 20 18 25 25 H 1.48502 * 109.47017 * 329.38027 * 22 20 18 26 26 C 1.44416 * 125.45328 * 330.85132 * 17 16 15 27 27 C 1.52987 * 113.17478 * 34.68338 * 26 17 16 28 28 H 1.09002 * 112.80907 * 84.24403 * 27 26 17 29 29 C 1.47467 * 125.74799 * 4.95890 * 11 9 8 30 30 H 1.08999 * 109.46896 * 184.87697 * 1 2 3 31 31 H 1.08997 * 109.47087 * 304.88549 * 1 2 3 32 32 H 1.09002 * 109.46963 * 64.88594 * 1 2 3 33 33 H 1.08995 * 109.47668 * 239.99766 * 2 1 3 34 34 H 1.09000 * 109.47073 * 119.99787 * 2 1 3 35 35 H 1.08997 * 109.46755 * 270.17693 * 7 6 5 36 36 H 1.08991 * 109.47139 * 30.17861 * 7 6 5 37 37 H 1.08998 * 109.46888 * 150.18026 * 7 6 5 38 38 H 1.08998 * 110.63173 * 322.88013 * 12 11 9 39 39 H 1.08994 * 110.62921 * 85.75474 * 12 11 9 40 40 H 1.09000 * 108.47155 * 305.09952 * 15 13 12 41 41 H 1.08998 * 108.47565 * 187.54596 * 15 13 12 42 42 H 1.08997 * 108.74712 * 156.14382 * 16 15 13 43 43 H 1.09005 * 108.74710 * 274.36252 * 16 15 13 44 44 H 0.96993 * 119.99933 * 179.97438 * 21 20 18 45 45 H 1.09000 * 108.74174 * 155.63550 * 26 17 16 46 46 H 1.08991 * 108.74191 * 273.84505 * 26 17 16 47 47 H 1.09002 * 110.04009 * 62.82548 * 29 11 9 48 48 H 1.08996 * 110.03621 * 301.37372 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.3357 2.0721 -1.0386 5 7 2.7269 3.2480 -0.6982 6 6 2.6692 3.3681 0.6284 7 6 3.0325 4.5837 1.4417 8 6 2.2173 2.1660 1.1057 9 6 1.9875 1.7966 2.5123 10 8 0.9223 2.0504 3.0414 11 7 2.9576 1.1770 3.2134 12 6 2.8296 0.6573 4.5943 13 6 4.2770 0.6473 5.1074 14 1 4.5758 1.6775 5.3010 15 6 4.4920 -0.1677 6.3463 16 6 4.2893 -1.6557 6.1589 17 7 4.7162 -2.1287 4.8616 18 6 5.1558 -3.4229 4.7791 19 1 5.7036 -3.8607 5.6004 20 6 4.8973 -4.1724 3.6396 21 7 5.5909 -5.2649 3.3991 22 14 3.5651 -3.6306 2.4476 23 1 4.1510 -2.7206 1.4306 24 1 2.9899 -4.8219 1.7730 25 1 2.4953 -2.9182 3.1914 26 6 4.7184 -1.3503 3.6452 27 6 5.0474 0.1259 3.8757 28 1 6.1195 0.3190 3.9138 29 6 4.3249 0.9018 2.7344 30 1 -0.3633 -1.0239 0.0874 31 1 -0.3633 0.5877 0.8430 32 1 -0.3633 0.4362 -0.9305 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 4.0886 4.5404 1.7078 36 1 2.8419 5.4829 0.8561 37 1 2.4298 4.6067 2.3496 38 1 2.2112 1.3210 5.1987 39 1 2.4163 -0.3512 4.5883 40 1 3.8007 0.1810 7.1134 41 1 5.5099 0.0005 6.6981 42 1 4.8521 -2.1855 6.9275 43 1 3.2304 -1.8832 6.2816 44 1 5.4100 -5.7888 2.6031 45 1 5.4559 -1.7708 2.9616 46 1 3.7338 -1.4199 3.1831 47 1 4.8452 1.8379 2.5317 48 1 4.2887 0.2910 1.8324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087991522.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:51 Heat of formation + Delta-G solvation = 71.920992 kcal Electronic energy + Delta-G solvation = -30951.536014 eV Core-core repulsion = 27043.638332 eV Total energy + Delta-G solvation = -3907.897682 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -44.50619 -41.76286 -39.89047 -37.32463 -36.85245 -34.83254 -33.89249 -33.05484 -32.66192 -31.96459 -29.53018 -28.76194 -27.20866 -26.40081 -25.74241 -24.33020 -23.40833 -22.95153 -22.40646 -20.75010 -19.98103 -18.97495 -18.57779 -17.91629 -17.87679 -17.39945 -16.92875 -16.80221 -16.09484 -16.00201 -15.60263 -15.25411 -15.06013 -14.82092 -14.68371 -14.59561 -14.40073 -14.24457 -13.96287 -13.82221 -13.76653 -13.60227 -13.28011 -13.17395 -13.08906 -12.73994 -12.72327 -12.61824 -12.33233 -12.22811 -12.13509 -11.87582 -11.67052 -11.48957 -11.36834 -11.29229 -11.09503 -10.72330 -10.36101 -9.97879 -8.77000 -8.23470 -5.63938 0.03567 0.61436 1.17934 1.18709 1.28766 1.31848 1.41364 1.66586 2.33989 2.89749 3.00290 3.16663 3.27710 3.38114 3.53766 3.55921 3.61721 3.71532 3.74279 3.92447 4.03501 4.15114 4.21195 4.33316 4.38228 4.42631 4.45451 4.48918 4.50353 4.64400 4.64594 4.66076 4.69848 4.80543 4.82346 4.85660 4.89862 4.93712 5.10674 5.16505 5.18294 5.20723 5.23886 5.27958 5.44904 5.93203 6.06871 6.13842 6.61044 7.02687 7.16237 7.70340 7.92104 8.96663 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.012976 B = 0.004941 C = 0.004097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.337431 B = 5665.010356 C = 6833.044829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.093 3.907 3 N -0.261 5.261 4 N -0.076 5.076 5 N -0.289 5.289 6 C 0.028 3.972 7 C -0.071 4.071 8 C -0.071 4.071 9 C 0.617 3.383 10 O -0.548 6.548 11 N -0.599 5.599 12 C 0.112 3.888 13 C -0.076 4.076 14 H 0.111 0.889 15 C -0.107 4.107 16 C 0.152 3.848 17 N -0.607 5.607 18 C -0.265 4.265 19 H 0.049 0.951 20 C -0.021 4.021 21 N -0.953 5.953 22 Si 0.943 3.057 23 H -0.269 1.269 24 H -0.310 1.310 25 H -0.271 1.271 26 C 0.146 3.854 27 C -0.098 4.098 28 H 0.126 0.874 29 C 0.103 3.897 30 H 0.109 0.891 31 H 0.051 0.949 32 H 0.078 0.922 33 H 0.136 0.864 34 H 0.092 0.908 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.096 0.904 39 H 0.053 0.947 40 H 0.094 0.906 41 H 0.081 0.919 42 H 0.044 0.956 43 H 0.006 0.994 44 H 0.262 0.738 45 H 0.038 0.962 46 H 0.000 1.000 47 H 0.104 0.896 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.218 18.178 -1.289 18.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.026 4.026 3 N -0.060 5.060 4 N -0.055 5.055 5 N -0.153 5.153 6 C -0.112 4.112 7 C -0.129 4.129 8 C -0.205 4.205 9 C 0.402 3.598 10 O -0.424 6.424 11 N -0.331 5.331 12 C -0.009 4.009 13 C -0.095 4.095 14 H 0.129 0.871 15 C -0.146 4.146 16 C 0.028 3.972 17 N -0.331 5.331 18 C -0.395 4.395 19 H 0.067 0.933 20 C -0.217 4.217 21 N -0.598 5.598 22 Si 0.773 3.227 23 H -0.195 1.195 24 H -0.239 1.239 25 H -0.196 1.196 26 C 0.020 3.980 27 C -0.118 4.118 28 H 0.144 0.856 29 C -0.020 4.020 30 H 0.127 0.873 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.154 0.846 34 H 0.110 0.890 35 H 0.120 0.880 36 H 0.114 0.886 37 H 0.098 0.902 38 H 0.114 0.886 39 H 0.071 0.929 40 H 0.113 0.887 41 H 0.099 0.901 42 H 0.062 0.938 43 H 0.024 0.976 44 H 0.071 0.929 45 H 0.056 0.944 46 H 0.018 0.982 47 H 0.122 0.878 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.745 18.220 -2.671 19.290 hybrid contribution -0.730 -1.148 0.151 1.369 sum -6.474 17.072 -2.519 18.431 Atomic orbital electron populations 1.22154 0.91110 1.05401 1.03454 1.22562 0.98029 0.75158 1.06896 1.48021 1.40893 1.13710 1.03336 1.78133 1.15442 0.99947 1.11985 1.74797 1.18195 1.09698 1.12657 1.22706 1.01473 0.96147 0.90870 1.20332 1.03558 0.91352 0.97700 1.21793 1.13991 0.94779 0.89987 1.16324 0.82776 0.77500 0.83222 1.90832 1.25889 1.54897 1.70815 1.48695 1.12646 1.55280 1.16516 1.22332 0.99083 0.98712 0.80771 1.21157 0.92413 1.01633 0.94339 0.87068 1.20621 1.03957 0.93025 0.96966 1.20173 0.96405 0.94762 0.85887 1.43154 1.75480 1.09118 1.05351 1.18964 1.28337 0.89063 1.03142 0.93316 1.26019 0.99669 0.95699 1.00301 1.69937 1.41907 1.19349 1.28566 0.85980 0.81440 0.75951 0.79377 1.19525 1.23905 1.19619 1.20794 0.96993 0.91709 0.88462 1.22812 1.01163 0.93400 0.94410 0.85585 1.22650 0.81166 1.01048 0.97113 0.87271 0.92962 0.90262 0.84590 0.88993 0.87958 0.88604 0.90227 0.88572 0.92913 0.88718 0.90061 0.93788 0.97579 0.92860 0.94412 0.98232 0.87763 0.92800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.18 10.24 71.98 0.74 -2.44 16 2 C 0.09 2.09 6.90 86.38 0.60 2.69 16 3 N -0.26 -7.02 3.39 -335.42 -1.14 -8.16 16 4 N -0.08 -2.22 13.14 37.02 0.49 -1.74 16 5 N -0.29 -8.35 12.35 -47.88 -0.59 -8.94 16 6 C 0.03 0.72 7.30 42.04 0.31 1.02 16 7 C -0.07 -1.19 10.28 71.24 0.73 -0.46 16 8 C -0.07 -1.92 5.93 40.41 0.24 -1.68 16 9 C 0.62 17.46 7.02 86.61 0.61 18.07 16 10 O -0.55 -18.41 17.37 -4.08 -0.07 -18.48 16 11 N -0.60 -15.40 3.33 -812.76 -2.71 -18.11 16 12 C 0.11 2.84 5.86 86.26 0.51 3.34 16 13 C -0.08 -1.65 2.65 -11.16 -0.03 -1.68 16 14 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 15 C -0.11 -2.47 5.46 29.04 0.16 -2.31 16 16 C 0.15 5.26 5.94 86.20 0.51 5.77 16 17 N -0.61 -26.08 2.84 -715.29 -2.03 -28.11 16 18 C -0.26 -14.30 9.60 84.04 0.81 -13.50 16 19 H 0.05 2.91 7.99 -2.91 -0.02 2.89 16 20 C -0.02 -1.18 5.13 84.86 0.44 -0.74 16 21 N -0.95 -58.02 13.97 21.65 0.30 -57.72 16 22 Si 0.94 44.60 24.04 68.60 1.65 46.25 16 23 H -0.27 -11.72 6.94 99.48 0.69 -11.03 16 24 H -0.31 -15.02 7.11 99.48 0.71 -14.31 16 25 H -0.27 -12.50 6.77 99.48 0.67 -11.83 16 26 C 0.15 5.51 2.89 86.76 0.25 5.76 16 27 C -0.10 -2.53 3.99 -9.38 -0.04 -2.57 16 28 H 0.13 2.83 8.14 -2.39 -0.02 2.81 16 29 C 0.10 2.41 5.62 87.15 0.49 2.90 16 30 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.14 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.09 2.25 7.98 -2.39 -0.02 2.23 16 35 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.08 1.32 8.02 -2.39 -0.02 1.30 16 38 H 0.10 2.20 8.02 -2.39 -0.02 2.18 16 39 H 0.05 1.65 7.10 -2.39 -0.02 1.64 16 40 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.04 1.58 7.86 -2.39 -0.02 1.56 16 43 H 0.01 0.23 8.14 -2.38 -0.02 0.21 16 44 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 45 H 0.04 1.62 6.54 -2.39 -0.02 1.61 16 46 H 0.00 0.02 3.81 -2.39 -0.01 0.01 16 47 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 48 H 0.05 1.43 7.74 -2.39 -0.02 1.41 16 Total: -1.00 -72.57 377.16 3.11 -69.46 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: 0.91 Total: 11.37 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: 6.31 Total: 14.17 kcal Atomic # 7 Polarization: -117.09 SS G_CDS: -5.68 Total: -122.77 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: -0.07 Total: -18.48 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.65 Total: 46.25 kcal Total: -72.57 3.11 -69.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087991522.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.377 kcal (2) G-P(sol) polarization free energy of solvation -72.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds