Wall clock time and date at job start Tue Mar 31 2020 17:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46503 * 109.47497 * 2 1 4 4 C 1.34811 * 126.59572 * 125.27215 * 3 2 1 5 5 C 1.36593 * 106.83930 * 180.15692 * 4 3 2 6 6 C 1.47526 * 125.77369 * 179.90120 * 5 4 3 7 7 O 1.21598 * 119.99352 * 359.70819 * 6 5 4 8 8 N 1.34770 * 120.00375 * 179.70942 * 6 5 4 9 9 C 1.46491 * 120.00191 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.47297 * 180.02562 * 9 8 6 11 11 C 1.55094 * 112.13640 * 299.03530 * 10 9 8 12 12 C 1.54277 * 106.60413 * 243.77643 * 11 10 9 13 13 C 1.54683 * 104.11472 * 333.29848 * 12 11 10 14 14 C 1.54575 * 111.31911 * 180.02562 * 10 9 8 15 15 H 1.08998 * 111.92481 * 18.13766 * 14 10 9 16 16 N 1.46898 * 107.36720 * 255.05020 * 14 10 9 17 17 C 1.36932 * 125.25142 * 181.65200 * 16 14 10 18 18 H 1.07997 * 120.00096 * 9.76352 * 17 16 14 19 19 C 1.38815 * 119.99869 * 189.75724 * 17 16 14 20 20 N 1.31614 * 120.00030 * 8.52588 * 19 17 16 21 21 Si 1.86802 * 120.00093 * 188.79483 * 19 17 16 22 22 H 1.48499 * 109.47282 * 264.74382 * 21 19 17 23 23 H 1.48508 * 109.47000 * 24.73857 * 21 19 17 24 24 H 1.48489 * 109.47411 * 144.74011 * 21 19 17 25 25 C 1.46737 * 109.49786 * 1.91639 * 16 14 10 26 26 C 1.53868 * 111.73578 * 63.25980 * 10 9 8 27 27 N 1.34401 * 108.45830 * 359.62579 * 5 4 3 28 28 N 1.28764 * 109.52164 * 0.23347 * 27 5 4 29 29 H 1.08995 * 109.47041 * 300.00101 * 1 2 3 30 30 H 1.09008 * 109.47282 * 59.99909 * 1 2 3 31 31 H 1.09000 * 109.47611 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47005 * 239.99674 * 2 1 3 33 33 H 1.08998 * 109.47339 * 120.00071 * 2 1 3 34 34 H 1.07997 * 126.58150 * 0.02562 * 4 3 2 35 35 H 0.96998 * 120.00193 * 359.97438 * 8 6 5 36 36 H 1.09008 * 109.47362 * 60.00111 * 9 8 6 37 37 H 1.09004 * 109.47260 * 299.99974 * 9 8 6 38 38 H 1.09005 * 110.54581 * 124.18098 * 11 10 9 39 39 H 1.08999 * 109.47616 * 2.79110 * 11 10 9 40 40 H 1.09001 * 110.50168 * 214.64014 * 12 11 10 41 41 H 1.09002 * 110.50070 * 91.95429 * 12 11 10 42 42 H 1.08997 * 110.61283 * 278.83186 * 13 12 11 43 43 H 1.08999 * 110.74644 * 155.91021 * 13 12 11 44 44 H 0.97001 * 120.00565 * 180.27498 * 20 19 17 45 45 H 1.08998 * 110.04374 * 100.24843 * 25 16 14 46 46 H 1.08998 * 110.04696 * 221.71130 * 25 16 14 47 47 H 1.08999 * 110.57130 * 212.77237 * 26 10 9 48 48 H 1.08998 * 110.57035 * 335.64381 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8756 1.9305 0.8836 5 6 3.0500 3.2324 0.5088 6 6 3.9075 4.2192 1.1924 7 8 4.5319 3.8977 2.1850 8 7 3.9987 5.4769 0.7168 9 6 4.8498 6.4569 1.3960 10 6 4.7745 7.7956 0.6589 11 6 5.2738 7.6853 -0.8054 12 6 6.5271 8.5785 -0.9122 13 6 6.3201 9.6515 0.1826 14 6 5.6597 8.8634 1.3412 15 1 6.4012 8.4152 2.0025 16 7 4.7653 9.7780 2.0633 17 6 5.1655 10.8801 2.7707 18 1 6.1864 11.2252 2.7008 19 6 4.2588 11.5538 3.5775 20 7 3.0659 11.0425 3.7961 21 14 4.7290 13.1898 4.3470 22 1 5.2359 12.9617 5.7240 23 1 5.7884 13.8346 3.5301 24 1 3.5369 14.0735 4.3984 25 6 3.3776 9.3249 1.9149 26 6 3.3534 8.3847 0.6912 27 7 2.3132 3.4607 -0.5918 28 7 1.6879 2.3845 -0.9219 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.3345 1.4367 1.7274 35 1 3.5009 5.7332 -0.0752 36 1 5.8804 6.1018 1.4008 37 1 4.5058 6.5877 2.4220 38 1 4.5072 8.0326 -1.4981 39 1 5.5332 6.6495 -1.0238 40 1 6.5820 9.0432 -1.8966 41 1 7.4278 7.9980 -0.7122 42 1 5.6564 10.4395 -0.1731 43 1 7.2757 10.0698 0.4988 44 1 2.4308 11.5151 4.3567 45 1 3.0626 8.7870 2.8091 46 1 2.7223 10.1785 1.7417 47 1 3.1496 8.9434 -0.2222 48 1 2.6148 7.5956 0.8317 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094548947.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:27 Heat of formation + Delta-G solvation = 77.559345 kcal Electronic energy + Delta-G solvation = -29020.022972 eV Core-core repulsion = 25112.369788 eV Total energy + Delta-G solvation = -3907.653184 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.40002 -39.82719 -38.65509 -35.76522 -34.68235 -33.90174 -31.75643 -31.62944 -30.80983 -30.02057 -27.77653 -26.60904 -25.09560 -24.70847 -23.78990 -23.02724 -22.03992 -20.61135 -20.01214 -19.69361 -18.64249 -17.82030 -16.89223 -16.43162 -16.39991 -15.73743 -15.25468 -14.95278 -14.79041 -14.70507 -14.59830 -14.18123 -13.68334 -13.43620 -13.34713 -13.05172 -12.86862 -12.77087 -12.46807 -12.40975 -12.01420 -11.76476 -11.54646 -11.40643 -11.21372 -11.10545 -10.73256 -10.66242 -10.64747 -10.58047 -10.21474 -10.19093 -10.04167 -9.82649 -9.73341 -9.58218 -9.50408 -9.46324 -8.79067 -8.49556 -6.71681 -5.66916 -2.99623 0.92083 1.60813 1.73785 3.23912 3.33245 3.43686 3.49535 3.51305 3.91743 4.04546 4.28886 4.51359 4.54878 4.57831 4.76546 4.93460 4.98269 5.01972 5.03355 5.10853 5.24406 5.49612 5.56023 5.58719 5.63443 5.66684 5.82375 5.90122 5.94382 6.08124 6.11711 6.14619 6.17246 6.25394 6.37662 6.45525 6.50696 6.54536 6.67682 6.76373 6.83260 6.91903 7.17233 7.54437 7.62436 7.70849 7.82163 7.87992 8.28034 8.34960 9.28737 9.90754 10.56790 11.45194 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.018850 B = 0.002579 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.040272 B =10854.641558 C =11576.520616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.118 3.882 3 N -0.363 5.363 4 C 0.091 3.909 5 C -0.097 4.097 6 C 0.600 3.400 7 O -0.542 6.542 8 N -0.705 5.705 9 C 0.142 3.858 10 C -0.080 4.080 11 C -0.110 4.110 12 C -0.122 4.122 13 C -0.130 4.130 14 C 0.172 3.828 15 H 0.046 0.954 16 N -0.595 5.595 17 C -0.224 4.224 18 H 0.075 0.925 19 C -0.008 4.008 20 N -0.918 5.918 21 Si 0.908 3.092 22 H -0.290 1.290 23 H -0.281 1.281 24 H -0.291 1.291 25 C 0.178 3.822 26 C -0.134 4.134 27 N -0.204 5.204 28 N -0.065 5.065 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.204 0.796 35 H 0.408 0.592 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.070 0.930 43 H 0.053 0.947 44 H 0.251 0.749 45 H 0.029 0.971 46 H 0.059 0.941 47 H 0.061 0.939 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.048 -22.438 -10.283 24.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.003 4.003 3 N -0.149 5.149 4 C -0.066 4.066 5 C -0.237 4.237 6 C 0.384 3.616 7 O -0.419 6.419 8 N -0.355 5.355 9 C 0.019 3.981 10 C -0.081 4.081 11 C -0.148 4.148 12 C -0.160 4.160 13 C -0.170 4.170 14 C 0.063 3.937 15 H 0.063 0.937 16 N -0.319 5.319 17 C -0.353 4.353 18 H 0.093 0.907 19 C -0.205 4.205 20 N -0.565 5.565 21 Si 0.738 3.262 22 H -0.217 1.217 23 H -0.207 1.207 24 H -0.218 1.218 25 C 0.053 3.947 26 C -0.172 4.172 27 N -0.077 5.077 28 N -0.046 5.046 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.116 0.884 33 H 0.123 0.877 34 H 0.221 0.779 35 H 0.243 0.757 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.089 0.911 43 H 0.072 0.928 44 H 0.061 0.939 45 H 0.047 0.953 46 H 0.077 0.923 47 H 0.080 0.920 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.536 -22.187 -10.655 24.743 hybrid contribution 0.422 0.550 1.032 1.243 sum -2.114 -21.637 -9.623 23.774 Atomic orbital electron populations 1.22091 0.92691 1.03684 1.04171 1.22031 0.96931 0.76222 1.05077 1.50608 1.31605 1.12355 1.20296 1.23391 0.93086 0.94131 0.95964 1.21566 1.07770 0.95083 0.99256 1.16737 0.80339 0.81443 0.83127 1.90816 1.46231 1.79293 1.25541 1.45843 1.47995 1.09995 1.31668 1.21381 0.93970 0.86122 0.96582 1.22139 0.97785 0.93529 0.94686 1.22446 0.97872 0.99279 0.95228 1.22297 0.97209 0.97536 0.99002 1.22984 1.00426 0.97723 0.95859 1.21521 0.91702 0.88802 0.91635 0.93686 1.44340 1.01130 1.27307 1.59081 1.18990 0.96095 1.01240 1.18928 0.90677 1.24817 0.96825 0.99501 0.99314 1.69977 1.06507 1.38286 1.41751 0.86166 0.77158 0.83721 0.79116 1.21745 1.20665 1.21770 1.21105 0.86897 0.94924 0.91795 1.22808 0.93974 0.99251 1.01190 1.74655 1.04716 1.18132 1.10243 1.81959 1.20450 0.90331 1.11820 0.91601 0.90668 0.89892 0.88373 0.87681 0.77892 0.75658 0.91371 0.90486 0.91610 0.92430 0.92510 0.92375 0.91077 0.92769 0.93850 0.95330 0.92318 0.92013 0.92301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.65 10.12 37.15 0.38 -0.27 16 2 C 0.12 0.45 7.26 -4.04 -0.03 0.42 16 3 N -0.36 -3.09 3.69 -61.06 -0.23 -3.31 16 4 C 0.09 0.86 11.27 -16.84 -0.19 0.67 16 5 C -0.10 -1.25 6.99 -83.55 -0.58 -1.83 16 6 C 0.60 9.07 7.82 -12.48 -0.10 8.97 16 7 O -0.54 -9.55 16.86 5.28 0.09 -9.46 16 8 N -0.70 -10.34 4.68 -61.35 -0.29 -10.63 16 9 C 0.14 2.34 4.49 -4.04 -0.02 2.32 16 10 C -0.08 -1.36 0.55 -152.12 -0.08 -1.44 16 11 C -0.11 -1.57 5.70 -24.96 -0.14 -1.71 16 12 C -0.12 -1.77 6.85 -25.18 -0.17 -1.94 16 13 C -0.13 -2.36 6.20 -24.84 -0.15 -2.51 16 14 C 0.17 3.47 3.55 -65.88 -0.23 3.24 16 15 H 0.05 0.95 7.92 -51.93 -0.41 0.54 16 16 N -0.59 -14.84 2.99 -162.29 -0.49 -15.33 16 17 C -0.22 -6.18 9.90 -15.06 -0.15 -6.33 16 18 H 0.08 2.02 7.84 -52.49 -0.41 1.61 16 19 C -0.01 -0.23 5.41 -17.43 -0.09 -0.32 16 20 N -0.92 -27.16 10.56 55.49 0.59 -26.57 16 21 Si 0.91 22.29 29.56 -169.99 -5.03 17.27 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 C 0.18 4.29 5.37 -3.21 -0.02 4.28 16 26 C -0.13 -2.47 5.87 -25.58 -0.15 -2.62 16 27 N -0.20 -2.73 12.04 32.85 0.40 -2.33 16 28 N -0.07 -0.78 13.65 60.35 0.82 0.05 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.41 8.14 -51.92 -0.42 -0.02 16 31 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 32 H 0.10 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.10 0.13 8.08 -51.93 -0.42 -0.29 16 34 H 0.20 1.29 8.06 -52.49 -0.42 0.87 16 35 H 0.41 5.55 7.40 -40.82 -0.30 5.24 16 36 H 0.07 1.10 8.14 -51.92 -0.42 0.68 16 37 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 38 H 0.07 0.90 7.32 -51.93 -0.38 0.52 16 39 H 0.06 0.75 7.52 -51.93 -0.39 0.36 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.07 1.42 8.06 -51.93 -0.42 1.00 16 43 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 45 H 0.03 0.77 7.85 -51.93 -0.41 0.36 16 46 H 0.06 1.58 7.13 -51.93 -0.37 1.21 16 47 H 0.06 1.10 7.41 -51.93 -0.38 0.71 16 48 H 0.06 1.01 7.24 -51.93 -0.38 0.64 16 LS Contribution 386.13 15.07 5.82 5.82 Total: -1.00 -33.73 386.13 -7.69 -41.42 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -7.64 Total: 2.17 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -1.74 Total: 0.91 kcal Atomic # 7 Polarization: -58.94 SS G_CDS: 0.81 Total: -58.13 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.09 Total: -9.46 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.03 Total: 17.27 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.73 -7.69 -41.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094548947.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.981 kcal (2) G-P(sol) polarization free energy of solvation -33.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds