Wall clock time and date at job start Tue Mar 31 2020 17:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46503 * 109.47497 * 2 1 4 4 C 1.34811 * 126.59572 * 125.27215 * 3 2 1 5 5 C 1.36593 * 106.83930 * 180.15692 * 4 3 2 6 6 C 1.47526 * 125.77369 * 179.90120 * 5 4 3 7 7 O 1.21598 * 119.99352 * 359.70819 * 6 5 4 8 8 N 1.34770 * 120.00375 * 179.70942 * 6 5 4 9 9 C 1.46491 * 120.00191 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.47297 * 180.02562 * 9 8 6 11 11 C 1.55094 * 112.13640 * 299.03530 * 10 9 8 12 12 C 1.54277 * 106.60413 * 243.77643 * 11 10 9 13 13 C 1.54683 * 104.11472 * 333.29848 * 12 11 10 14 14 C 1.54575 * 111.31911 * 180.02562 * 10 9 8 15 15 H 1.08998 * 111.92481 * 18.13766 * 14 10 9 16 16 N 1.46898 * 107.36720 * 255.05020 * 14 10 9 17 17 C 1.36932 * 125.25142 * 181.65200 * 16 14 10 18 18 H 1.07997 * 120.00096 * 9.76352 * 17 16 14 19 19 C 1.38815 * 119.99869 * 189.75724 * 17 16 14 20 20 N 1.31614 * 120.00030 * 8.52588 * 19 17 16 21 21 Si 1.86802 * 120.00093 * 188.79483 * 19 17 16 22 22 H 1.48499 * 109.47282 * 264.74382 * 21 19 17 23 23 H 1.48508 * 109.47000 * 24.73857 * 21 19 17 24 24 H 1.48489 * 109.47411 * 144.74011 * 21 19 17 25 25 C 1.46737 * 109.49786 * 1.91639 * 16 14 10 26 26 C 1.53868 * 111.73578 * 63.25980 * 10 9 8 27 27 N 1.34401 * 108.45830 * 359.62579 * 5 4 3 28 28 N 1.28764 * 109.52164 * 0.23347 * 27 5 4 29 29 H 1.08995 * 109.47041 * 300.00101 * 1 2 3 30 30 H 1.09008 * 109.47282 * 59.99909 * 1 2 3 31 31 H 1.09000 * 109.47611 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47005 * 239.99674 * 2 1 3 33 33 H 1.08998 * 109.47339 * 120.00071 * 2 1 3 34 34 H 1.07997 * 126.58150 * 0.02562 * 4 3 2 35 35 H 0.96998 * 120.00193 * 359.97438 * 8 6 5 36 36 H 1.09008 * 109.47362 * 60.00111 * 9 8 6 37 37 H 1.09004 * 109.47260 * 299.99974 * 9 8 6 38 38 H 1.09005 * 110.54581 * 124.18098 * 11 10 9 39 39 H 1.08999 * 109.47616 * 2.79110 * 11 10 9 40 40 H 1.09001 * 110.50168 * 214.64014 * 12 11 10 41 41 H 1.09002 * 110.50070 * 91.95429 * 12 11 10 42 42 H 1.08997 * 110.61283 * 278.83186 * 13 12 11 43 43 H 1.08999 * 110.74644 * 155.91021 * 13 12 11 44 44 H 0.97001 * 120.00565 * 180.27498 * 20 19 17 45 45 H 1.08998 * 110.04374 * 100.24843 * 25 16 14 46 46 H 1.08998 * 110.04696 * 221.71130 * 25 16 14 47 47 H 1.08999 * 110.57130 * 212.77237 * 26 10 9 48 48 H 1.08998 * 110.57035 * 335.64381 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8756 1.9305 0.8836 5 6 3.0500 3.2324 0.5088 6 6 3.9075 4.2192 1.1924 7 8 4.5319 3.8977 2.1850 8 7 3.9987 5.4769 0.7168 9 6 4.8498 6.4569 1.3960 10 6 4.7745 7.7956 0.6589 11 6 5.2738 7.6853 -0.8054 12 6 6.5271 8.5785 -0.9122 13 6 6.3201 9.6515 0.1826 14 6 5.6597 8.8634 1.3412 15 1 6.4012 8.4152 2.0025 16 7 4.7653 9.7780 2.0633 17 6 5.1655 10.8801 2.7707 18 1 6.1864 11.2252 2.7008 19 6 4.2588 11.5538 3.5775 20 7 3.0659 11.0425 3.7961 21 14 4.7290 13.1898 4.3470 22 1 5.2359 12.9617 5.7240 23 1 5.7884 13.8346 3.5301 24 1 3.5369 14.0735 4.3984 25 6 3.3776 9.3249 1.9149 26 6 3.3534 8.3847 0.6912 27 7 2.3132 3.4607 -0.5918 28 7 1.6879 2.3845 -0.9219 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.3345 1.4367 1.7274 35 1 3.5009 5.7332 -0.0752 36 1 5.8804 6.1018 1.4008 37 1 4.5058 6.5877 2.4220 38 1 4.5072 8.0326 -1.4981 39 1 5.5332 6.6495 -1.0238 40 1 6.5820 9.0432 -1.8966 41 1 7.4278 7.9980 -0.7122 42 1 5.6564 10.4395 -0.1731 43 1 7.2757 10.0698 0.4988 44 1 2.4308 11.5151 4.3567 45 1 3.0626 8.7870 2.8091 46 1 2.7223 10.1785 1.7417 47 1 3.1496 8.9434 -0.2222 48 1 2.6148 7.5956 0.8317 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094548947.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:26 Heat of formation + Delta-G solvation = 54.599548 kcal Electronic energy + Delta-G solvation = -29021.018584 eV Core-core repulsion = 25112.369788 eV Total energy + Delta-G solvation = -3908.648796 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -43.21664 -41.23556 -39.98790 -36.38964 -36.24907 -35.38170 -33.51146 -32.38454 -32.10307 -31.22365 -29.21937 -28.30511 -26.16382 -25.68928 -25.48311 -24.12746 -22.71975 -22.07439 -21.48673 -21.01268 -19.84596 -19.08737 -18.62554 -17.36046 -17.17795 -16.92605 -16.83713 -16.35064 -16.15658 -15.76546 -15.62321 -15.26418 -15.13604 -14.79405 -14.55770 -14.37672 -14.10737 -13.74673 -13.44379 -13.36696 -13.32417 -13.05563 -12.87536 -12.84350 -12.57373 -12.56373 -12.41945 -12.04925 -11.98355 -11.85565 -11.63379 -11.58114 -11.41484 -11.36648 -11.30593 -11.16805 -11.04839 -10.62600 -10.41746 -10.02150 -8.78624 -7.82930 -5.17154 0.16980 0.62128 1.14078 1.45610 1.46702 1.56317 2.10461 2.24434 2.51762 3.18698 3.34202 3.41126 3.52280 3.68629 3.72856 3.84385 3.96217 4.00103 4.01644 4.26400 4.30539 4.35664 4.40672 4.43964 4.53157 4.59524 4.64043 4.70171 4.75963 4.79458 4.87251 4.94474 4.96611 5.05146 5.17825 5.19567 5.24631 5.29066 5.37347 5.40418 5.47793 5.50430 5.55080 5.63903 5.71423 5.79663 6.25932 6.42560 6.91335 7.13042 7.14584 7.85003 8.49002 9.28155 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.018850 B = 0.002579 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.040272 B =10854.641558 C =11576.520616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.107 3.893 3 N -0.348 5.348 4 C 0.110 3.890 5 C -0.125 4.125 6 C 0.602 3.398 7 O -0.573 6.573 8 N -0.699 5.699 9 C 0.154 3.846 10 C -0.068 4.068 11 C -0.102 4.102 12 C -0.111 4.111 13 C -0.124 4.124 14 C 0.157 3.843 15 H 0.036 0.964 16 N -0.613 5.613 17 C -0.230 4.230 18 H 0.079 0.921 19 C -0.069 4.069 20 N -0.951 5.951 21 Si 0.973 3.027 22 H -0.290 1.290 23 H -0.267 1.267 24 H -0.296 1.296 25 C 0.187 3.813 26 C -0.118 4.118 27 N -0.224 5.224 28 N -0.086 5.086 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.110 0.890 32 H 0.116 0.884 33 H 0.141 0.859 34 H 0.236 0.764 35 H 0.415 0.585 36 H 0.075 0.925 37 H 0.041 0.959 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.050 0.950 43 H 0.052 0.948 44 H 0.245 0.755 45 H -0.012 1.012 46 H 0.021 0.979 47 H 0.076 0.924 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.042 -24.815 -12.161 27.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.012 4.012 3 N -0.134 5.134 4 C -0.048 4.048 5 C -0.265 4.265 6 C 0.387 3.613 7 O -0.452 6.452 8 N -0.350 5.350 9 C 0.030 3.970 10 C -0.069 4.069 11 C -0.139 4.139 12 C -0.148 4.148 13 C -0.164 4.164 14 C 0.051 3.949 15 H 0.054 0.946 16 N -0.337 5.337 17 C -0.359 4.359 18 H 0.097 0.903 19 C -0.262 4.262 20 N -0.600 5.600 21 Si 0.802 3.198 22 H -0.217 1.217 23 H -0.192 1.192 24 H -0.222 1.222 25 C 0.061 3.939 26 C -0.156 4.156 27 N -0.098 5.098 28 N -0.067 5.067 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.128 0.872 32 H 0.135 0.865 33 H 0.159 0.841 34 H 0.253 0.747 35 H 0.252 0.748 36 H 0.094 0.906 37 H 0.059 0.941 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.054 0.946 45 H 0.006 0.994 46 H 0.040 0.960 47 H 0.094 0.906 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.526 -24.598 -12.595 27.677 hybrid contribution 0.087 1.155 1.661 2.025 sum -1.439 -23.443 -10.934 25.907 Atomic orbital electron populations 1.22087 0.92782 1.04956 1.02580 1.22579 0.96862 0.73951 1.07779 1.50955 1.30357 1.13245 1.18811 1.23848 0.91971 0.93008 0.96016 1.21387 1.08967 0.95965 1.00210 1.17013 0.80004 0.81604 0.82659 1.90792 1.47637 1.79846 1.26887 1.45707 1.47822 1.09734 1.31692 1.21093 0.94503 0.86532 0.94864 1.22032 0.95766 0.92466 0.96612 1.22417 0.98148 1.00729 0.92649 1.22258 0.97845 0.96233 0.98512 1.22814 0.99426 0.98044 0.96101 1.21820 0.91683 0.89452 0.91993 0.94606 1.44612 1.02300 1.27629 1.59126 1.19353 0.96181 1.01981 1.18416 0.90310 1.25641 0.97003 1.02952 1.00581 1.70196 1.07520 1.39514 1.42786 0.85134 0.76828 0.79675 0.78160 1.21678 1.19209 1.22220 1.20830 0.86194 0.94129 0.92732 1.22645 0.95717 0.98436 0.98794 1.74619 1.05267 1.19168 1.10744 1.81873 1.20873 0.90886 1.13042 0.92824 0.92585 0.87193 0.86550 0.84114 0.74736 0.74816 0.90635 0.94055 0.90269 0.90291 0.90240 0.90739 0.93157 0.92911 0.94613 0.99430 0.96006 0.90558 0.91013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.90 10.12 71.98 0.73 -0.18 16 2 C 0.11 0.46 7.26 86.38 0.63 1.09 16 3 N -0.35 -5.08 3.69 -347.11 -1.28 -6.37 16 4 C 0.11 1.82 11.27 83.85 0.95 2.76 16 5 C -0.13 -3.07 6.99 40.82 0.29 -2.79 16 6 C 0.60 17.84 7.82 86.69 0.68 18.52 16 7 O -0.57 -20.03 16.86 -4.02 -0.07 -20.10 16 8 N -0.70 -20.03 4.68 -466.28 -2.18 -22.22 16 9 C 0.15 5.06 4.49 86.38 0.39 5.44 16 10 C -0.07 -2.24 0.55 -50.63 -0.03 -2.27 16 11 C -0.10 -2.58 5.70 31.74 0.18 -2.40 16 12 C -0.11 -2.82 6.85 31.60 0.22 -2.60 16 13 C -0.12 -4.36 6.20 31.82 0.20 -4.16 16 14 C 0.16 6.41 3.55 46.10 0.16 6.57 16 15 H 0.04 1.53 7.92 -2.39 -0.02 1.51 16 16 N -0.61 -31.74 2.99 -667.37 -2.00 -33.74 16 17 C -0.23 -13.08 9.90 84.04 0.83 -12.25 16 18 H 0.08 4.31 7.84 -2.91 -0.02 4.29 16 19 C -0.07 -4.03 5.41 84.86 0.46 -3.57 16 20 N -0.95 -59.15 10.56 21.65 0.23 -58.92 16 21 Si 0.97 47.12 29.56 68.60 2.03 49.15 16 22 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 23 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 24 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 25 C 0.19 9.51 5.37 86.79 0.47 9.98 16 26 C -0.12 -4.38 5.87 31.34 0.18 -4.19 16 27 N -0.22 -5.79 12.04 -49.99 -0.60 -6.40 16 28 N -0.09 -1.94 13.65 37.02 0.51 -1.44 16 29 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 31 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 32 H 0.12 0.17 8.14 -2.39 -0.02 0.15 16 33 H 0.14 -0.32 8.08 -2.39 -0.02 -0.34 16 34 H 0.24 2.19 8.06 -2.91 -0.02 2.16 16 35 H 0.41 10.74 7.40 -92.71 -0.69 10.06 16 36 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 37 H 0.04 1.65 8.14 -2.38 -0.02 1.64 16 38 H 0.08 1.86 7.32 -2.38 -0.02 1.84 16 39 H 0.08 1.74 7.52 -2.39 -0.02 1.72 16 40 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.05 1.97 8.06 -2.39 -0.02 1.95 16 43 H 0.05 1.83 8.14 -2.39 -0.02 1.82 16 44 H 0.24 14.84 8.31 -92.71 -0.77 14.07 16 45 H -0.01 -0.72 7.85 -2.39 -0.02 -0.73 16 46 H 0.02 1.24 7.13 -2.39 -0.02 1.23 16 47 H 0.08 2.64 7.41 -2.39 -0.02 2.62 16 48 H 0.07 2.48 7.24 -2.39 -0.02 2.46 16 Total: -1.00 -78.51 386.13 3.23 -75.28 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: 0.28 Total: 14.79 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: 6.32 Total: 9.96 kcal Atomic # 7 Polarization: -123.74 SS G_CDS: -5.33 Total: -129.07 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.07 Total: -20.10 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.15 kcal Total: -78.51 3.23 -75.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094548947.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.881 kcal (2) G-P(sol) polarization free energy of solvation -78.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds