Wall clock time and date at job start Tue Mar 31 2020 17:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47156 * 2 1 4 4 C 1.50701 * 109.47524 * 119.99803 * 2 1 3 5 5 O 1.21273 * 120.00430 * 120.00131 * 4 2 1 6 6 N 1.34778 * 119.99641 * 300.00297 * 4 2 1 7 7 C 1.46507 * 119.99824 * 179.97438 * 6 4 2 8 8 C 1.52995 * 109.47083 * 180.02562 * 7 6 4 9 9 C 1.53516 * 111.58786 * 297.81051 * 8 7 6 10 10 C 1.54257 * 106.55632 * 241.45743 * 9 8 7 11 11 C 1.54734 * 104.13846 * 334.63648 * 10 9 8 12 12 C 1.54668 * 111.22663 * 178.41386 * 8 7 6 13 13 H 1.08994 * 112.40168 * 19.48666 * 12 8 7 14 14 N 1.47250 * 106.10167 * 256.39604 * 12 8 7 15 15 C 1.36945 * 126.51893 * 150.06689 * 14 12 8 16 16 H 1.08000 * 119.99347 * 0.02562 * 15 14 12 17 17 C 1.38810 * 120.00032 * 180.02562 * 15 14 12 18 18 N 1.31618 * 120.00161 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99843 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46964 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47113 * 119.99596 * 19 17 15 22 22 H 1.48499 * 109.47124 * 239.99965 * 19 17 15 23 23 C 1.47293 * 107.01303 * 330.13332 * 14 12 8 24 24 C 1.53674 * 111.17719 * 61.01024 * 8 7 6 25 25 N 1.46493 * 109.47335 * 240.00053 * 2 1 3 26 26 C 1.34434 * 126.82042 * 324.99796 * 25 2 1 27 27 N 1.30840 * 108.07501 * 179.97438 * 26 25 2 28 28 C 1.33242 * 109.82822 * 359.97438 * 27 26 25 29 29 N 1.30707 * 108.94902 * 359.75492 * 28 27 26 30 30 H 1.09002 * 109.47246 * 299.99471 * 1 2 3 31 31 H 1.09000 * 109.47333 * 60.00421 * 1 2 3 32 32 H 1.09000 * 109.46924 * 180.02562 * 1 2 3 33 33 H 0.97000 * 120.00447 * 359.97438 * 6 4 2 34 34 H 1.08999 * 109.47022 * 59.99706 * 7 6 4 35 35 H 1.09003 * 109.46695 * 299.99741 * 7 6 4 36 36 H 1.08995 * 110.04331 * 0.73418 * 9 8 7 37 37 H 1.09000 * 110.04067 * 122.18475 * 9 8 7 38 38 H 1.09000 * 110.49695 * 215.97242 * 10 9 8 39 39 H 1.08996 * 110.49523 * 93.29671 * 10 9 8 40 40 H 1.09002 * 110.65322 * 279.09407 * 11 10 9 41 41 H 1.09006 * 110.79012 * 156.07891 * 11 10 9 42 42 H 0.97005 * 119.99925 * 180.02562 * 18 17 15 43 43 H 1.09004 * 110.08255 * 271.59584 * 23 14 12 44 44 H 1.09001 * 110.17776 * 149.96322 * 23 14 12 45 45 H 1.09002 * 110.23270 * 241.06727 * 24 8 7 46 46 H 1.09000 * 110.22815 * 2.93996 * 24 8 7 47 47 H 1.07993 * 125.96158 * 359.92577 * 26 25 2 48 48 H 1.08002 * 125.52306 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.7297 -1.6963 1.1193 6 7 1.7068 -0.2498 2.4545 7 6 2.1947 -0.9407 3.6508 8 6 1.6843 -0.2198 4.9000 9 6 2.2129 1.2195 4.9771 10 6 3.0507 1.3114 6.2691 11 6 2.4633 0.2069 7.1798 12 6 2.1440 -0.9399 6.1893 13 1 2.9959 -1.5975 6.0165 14 7 0.9677 -1.6699 6.6909 15 6 0.9772 -2.8381 7.4054 16 1 1.9156 -3.3123 7.6524 17 6 -0.2191 -3.4126 7.8122 18 7 -1.3626 -2.8344 7.5117 19 14 -0.2060 -5.0058 8.7875 20 1 1.1964 -5.4485 8.9936 21 1 -0.8546 -4.7850 10.1050 22 1 -0.9494 -6.0507 8.0387 23 6 -0.2220 -0.9063 6.2772 24 6 0.1484 -0.2188 4.9517 25 7 2.0183 -0.6906 -1.1961 26 6 1.4558 -1.7519 -1.7998 27 7 2.1933 -2.0693 -2.8329 28 6 3.2300 -1.2369 -2.9210 29 7 3.1635 -0.3713 -1.9440 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.1494 0.5390 2.5436 34 1 3.2847 -0.9411 3.6509 35 1 1.8310 -1.9683 3.6506 36 1 2.8379 1.4348 4.1105 37 1 1.3802 1.9214 5.0212 38 1 2.9320 2.2910 6.7321 39 1 4.1013 1.1128 6.0576 40 1 1.5543 0.5558 7.6699 41 1 3.1969 -0.1162 7.9185 42 1 -2.1986 -3.2357 7.7963 43 1 -0.4676 -0.1584 7.0311 44 1 -1.0668 -1.5786 6.1270 45 1 -0.2285 0.8039 4.9393 46 1 -0.2574 -0.7798 4.1099 47 1 0.5532 -2.2551 -1.4862 48 1 3.9981 -1.2694 -3.6796 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107366420.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:34 Heat of formation + Delta-G solvation = 82.389210 kcal Electronic energy + Delta-G solvation = -29583.686458 eV Core-core repulsion = 25676.242712 eV Total energy + Delta-G solvation = -3907.443746 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.27514 -40.24915 -39.15143 -35.26442 -34.94467 -34.00641 -31.72716 -31.49839 -30.69986 -29.97130 -28.08174 -26.87347 -25.66072 -24.28014 -23.74757 -22.29855 -22.00264 -20.58269 -20.55341 -19.66288 -18.66359 -17.76198 -17.27952 -17.00427 -15.84763 -15.69192 -15.39159 -15.09652 -14.80099 -14.54992 -14.47590 -14.23373 -13.73686 -13.68499 -13.47006 -13.26205 -12.95912 -12.70280 -12.66062 -12.55914 -11.94205 -11.81165 -11.68363 -11.29387 -11.05393 -10.85543 -10.69366 -10.61416 -10.55919 -10.34350 -10.17836 -10.15781 -10.06288 -9.95116 -9.89498 -9.69682 -9.57152 -9.53868 -9.05721 -8.72027 -6.93142 -5.69131 -3.14101 1.42355 1.93953 2.36787 2.84721 3.06591 3.36231 3.42716 3.44387 4.04051 4.16761 4.30876 4.40997 4.43348 4.63622 4.86916 4.89304 4.98001 4.99651 5.01917 5.16082 5.43346 5.46562 5.48284 5.53032 5.67472 5.82130 5.86135 5.98228 6.02458 6.03227 6.03920 6.07818 6.24278 6.26541 6.28109 6.36565 6.39688 6.53626 6.57963 6.60212 6.71637 6.81822 7.01335 7.34344 7.43639 7.58611 7.79854 7.92425 8.01450 8.35361 9.16315 9.77180 10.43196 11.31298 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014362 B = 0.003009 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.083548 B = 9301.891994 C =10303.268803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.139 3.861 3 H 0.130 0.870 4 C 0.498 3.502 5 O -0.523 6.523 6 N -0.713 5.713 7 C 0.143 3.857 8 C -0.087 4.087 9 C -0.111 4.111 10 C -0.123 4.123 11 C -0.136 4.136 12 C 0.169 3.831 13 H 0.064 0.936 14 N -0.588 5.588 15 C -0.218 4.218 16 H 0.078 0.922 17 C -0.011 4.011 18 N -0.921 5.921 19 Si 0.914 3.086 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.290 1.290 23 C 0.137 3.863 24 C -0.130 4.130 25 N -0.361 5.361 26 C 0.271 3.729 27 N -0.547 5.547 28 C 0.198 3.802 29 N -0.316 5.316 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.401 0.599 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.056 0.944 37 H 0.063 0.937 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.069 0.931 41 H 0.055 0.945 42 H 0.251 0.749 43 H 0.006 0.994 44 H 0.121 0.879 45 H 0.054 0.946 46 H 0.055 0.945 47 H 0.215 0.785 48 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.773 11.132 -14.250 18.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.031 3.969 3 H 0.148 0.852 4 C 0.281 3.719 5 O -0.399 6.399 6 N -0.365 5.365 7 C 0.020 3.980 8 C -0.089 4.089 9 C -0.149 4.149 10 C -0.161 4.161 11 C -0.176 4.176 12 C 0.059 3.941 13 H 0.082 0.918 14 N -0.309 5.309 15 C -0.347 4.347 16 H 0.096 0.904 17 C -0.206 4.206 18 N -0.570 5.570 19 Si 0.744 3.256 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.218 1.218 23 C 0.012 3.988 24 C -0.169 4.169 25 N -0.151 5.151 26 C -0.026 4.026 27 N -0.274 5.274 28 C -0.105 4.105 29 N -0.143 5.143 30 H 0.113 0.887 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.235 0.765 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.088 0.912 41 H 0.074 0.926 42 H 0.062 0.938 43 H 0.024 0.976 44 H 0.138 0.862 45 H 0.072 0.928 46 H 0.073 0.927 47 H 0.232 0.768 48 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 3.560 10.541 -14.241 18.072 hybrid contribution -0.389 -0.367 0.867 1.019 sum 3.171 10.174 -13.373 17.100 Atomic orbital electron populations 1.22202 0.89944 1.04874 1.05128 1.21231 0.96468 0.97951 0.81220 0.85217 1.20502 0.81400 0.85313 0.84696 1.90792 1.37002 1.25698 1.86372 1.45992 1.53170 1.31967 1.05330 1.21436 0.98373 0.96491 0.81663 1.22029 0.97125 0.94792 0.94973 1.22234 0.99270 0.95529 0.97836 1.22277 0.98759 0.99004 0.96047 1.23036 1.00351 0.96051 0.98159 1.21663 0.91435 0.91408 0.89567 0.91759 1.44609 0.99985 1.23934 1.62351 1.19153 0.92991 0.96998 1.25514 0.90380 1.24758 0.95234 0.99301 1.01336 1.69634 0.96725 1.39650 1.50947 0.86004 0.77387 0.82869 0.79300 1.20511 1.21784 1.21750 1.21883 0.93412 0.94331 0.89208 1.22726 0.92726 0.99751 1.01717 1.50043 1.19187 1.24475 1.21437 1.25919 0.99157 0.87845 0.89649 1.70574 1.07184 1.28715 1.20948 1.25970 0.97276 0.90056 0.97154 1.78024 1.02976 1.25265 1.08008 0.88683 0.89982 0.90453 0.76465 0.91785 0.90621 0.92523 0.91784 0.92532 0.92367 0.91215 0.92634 0.93768 0.97591 0.86180 0.92751 0.92650 0.76850 0.76708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.91 8.75 37.16 0.33 -0.58 16 2 C 0.14 1.25 3.77 -69.09 -0.26 0.99 16 3 H 0.13 0.94 8.14 -51.93 -0.42 0.52 16 4 C 0.50 6.27 7.22 -10.98 -0.08 6.19 16 5 O -0.52 -9.25 16.42 5.56 0.09 -9.16 16 6 N -0.71 -8.07 4.75 -60.29 -0.29 -8.35 16 7 C 0.14 2.11 4.29 -4.04 -0.02 2.09 16 8 C -0.09 -1.31 0.66 -153.02 -0.10 -1.42 16 9 C -0.11 -1.38 5.68 -25.81 -0.15 -1.52 16 10 C -0.12 -1.63 6.84 -25.16 -0.17 -1.80 16 11 C -0.14 -2.32 6.37 -24.84 -0.16 -2.47 16 12 C 0.17 3.19 3.59 -65.66 -0.24 2.95 16 13 H 0.06 1.25 7.95 -51.93 -0.41 0.83 16 14 N -0.59 -13.86 2.99 -161.86 -0.48 -14.34 16 15 C -0.22 -5.79 10.33 -15.06 -0.16 -5.95 16 16 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 17 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 18 N -0.92 -25.70 10.06 55.49 0.56 -25.15 16 19 Si 0.91 21.62 29.55 -169.99 -5.02 16.59 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 23 C 0.14 3.05 5.68 -3.17 -0.02 3.03 16 24 C -0.13 -2.13 5.73 -25.94 -0.15 -2.28 16 25 N -0.36 -4.20 3.04 -57.25 -0.17 -4.37 16 26 C 0.27 3.04 11.77 -90.64 -1.07 1.98 16 27 N -0.55 -7.00 11.19 -15.83 -0.18 -7.18 16 28 C 0.20 2.35 13.03 -91.82 -1.20 1.15 16 29 N -0.32 -4.16 12.70 29.29 0.37 -3.79 16 30 H 0.09 0.39 7.56 -51.93 -0.39 0.00 16 31 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.45 7.22 -51.93 -0.38 0.07 16 33 H 0.40 3.39 7.28 -40.82 -0.30 3.10 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.06 0.63 7.56 -51.93 -0.39 0.23 16 37 H 0.06 0.74 7.06 -51.93 -0.37 0.37 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 1.33 7.29 -51.93 -0.38 0.95 16 41 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 43 H 0.01 0.15 7.72 -51.93 -0.40 -0.26 16 44 H 0.12 3.09 5.46 -51.93 -0.28 2.81 16 45 H 0.05 0.76 7.07 -51.93 -0.37 0.40 16 46 H 0.05 0.89 7.57 -51.93 -0.39 0.50 16 47 H 0.22 1.64 7.32 -52.49 -0.38 1.25 16 48 H 0.22 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 379.47 15.07 5.72 5.72 Total: -1.00 -34.26 379.47 -10.30 -44.56 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -7.37 Total: 3.52 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: -3.53 Total: 1.95 kcal Atomic # 7 Polarization: -62.99 SS G_CDS: -0.19 Total: -63.18 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.09 Total: -9.16 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.26 -10.30 -44.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107366420.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.948 kcal (2) G-P(sol) polarization free energy of solvation -34.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds