Wall clock time and date at job start Tue Mar 31 2020 17:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47156 * 2 1 4 4 C 1.50701 * 109.47524 * 119.99803 * 2 1 3 5 5 O 1.21273 * 120.00430 * 120.00131 * 4 2 1 6 6 N 1.34778 * 119.99641 * 300.00297 * 4 2 1 7 7 C 1.46507 * 119.99824 * 179.97438 * 6 4 2 8 8 C 1.52995 * 109.47083 * 180.02562 * 7 6 4 9 9 C 1.53516 * 111.58786 * 297.81051 * 8 7 6 10 10 C 1.54257 * 106.55632 * 241.45743 * 9 8 7 11 11 C 1.54734 * 104.13846 * 334.63648 * 10 9 8 12 12 C 1.54668 * 111.22663 * 178.41386 * 8 7 6 13 13 H 1.08994 * 112.40168 * 19.48666 * 12 8 7 14 14 N 1.47250 * 106.10167 * 256.39604 * 12 8 7 15 15 C 1.36945 * 126.51893 * 150.06689 * 14 12 8 16 16 H 1.08000 * 119.99347 * 0.02562 * 15 14 12 17 17 C 1.38810 * 120.00032 * 180.02562 * 15 14 12 18 18 N 1.31618 * 120.00161 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99843 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46964 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47113 * 119.99596 * 19 17 15 22 22 H 1.48499 * 109.47124 * 239.99965 * 19 17 15 23 23 C 1.47293 * 107.01303 * 330.13332 * 14 12 8 24 24 C 1.53674 * 111.17719 * 61.01024 * 8 7 6 25 25 N 1.46493 * 109.47335 * 240.00053 * 2 1 3 26 26 C 1.34434 * 126.82042 * 324.99796 * 25 2 1 27 27 N 1.30840 * 108.07501 * 179.97438 * 26 25 2 28 28 C 1.33242 * 109.82822 * 359.97438 * 27 26 25 29 29 N 1.30707 * 108.94902 * 359.75492 * 28 27 26 30 30 H 1.09002 * 109.47246 * 299.99471 * 1 2 3 31 31 H 1.09000 * 109.47333 * 60.00421 * 1 2 3 32 32 H 1.09000 * 109.46924 * 180.02562 * 1 2 3 33 33 H 0.97000 * 120.00447 * 359.97438 * 6 4 2 34 34 H 1.08999 * 109.47022 * 59.99706 * 7 6 4 35 35 H 1.09003 * 109.46695 * 299.99741 * 7 6 4 36 36 H 1.08995 * 110.04331 * 0.73418 * 9 8 7 37 37 H 1.09000 * 110.04067 * 122.18475 * 9 8 7 38 38 H 1.09000 * 110.49695 * 215.97242 * 10 9 8 39 39 H 1.08996 * 110.49523 * 93.29671 * 10 9 8 40 40 H 1.09002 * 110.65322 * 279.09407 * 11 10 9 41 41 H 1.09006 * 110.79012 * 156.07891 * 11 10 9 42 42 H 0.97005 * 119.99925 * 180.02562 * 18 17 15 43 43 H 1.09004 * 110.08255 * 271.59584 * 23 14 12 44 44 H 1.09001 * 110.17776 * 149.96322 * 23 14 12 45 45 H 1.09002 * 110.23270 * 241.06727 * 24 8 7 46 46 H 1.09000 * 110.22815 * 2.93996 * 24 8 7 47 47 H 1.07993 * 125.96158 * 359.92577 * 26 25 2 48 48 H 1.08002 * 125.52306 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.7297 -1.6963 1.1193 6 7 1.7068 -0.2498 2.4545 7 6 2.1947 -0.9407 3.6508 8 6 1.6843 -0.2198 4.9000 9 6 2.2129 1.2195 4.9771 10 6 3.0507 1.3114 6.2691 11 6 2.4633 0.2069 7.1798 12 6 2.1440 -0.9399 6.1893 13 1 2.9959 -1.5975 6.0165 14 7 0.9677 -1.6699 6.6909 15 6 0.9772 -2.8381 7.4054 16 1 1.9156 -3.3123 7.6524 17 6 -0.2191 -3.4126 7.8122 18 7 -1.3626 -2.8344 7.5117 19 14 -0.2060 -5.0058 8.7875 20 1 1.1964 -5.4485 8.9936 21 1 -0.8546 -4.7850 10.1050 22 1 -0.9494 -6.0507 8.0387 23 6 -0.2220 -0.9063 6.2772 24 6 0.1484 -0.2188 4.9517 25 7 2.0183 -0.6906 -1.1961 26 6 1.4558 -1.7519 -1.7998 27 7 2.1933 -2.0693 -2.8329 28 6 3.2300 -1.2369 -2.9210 29 7 3.1635 -0.3713 -1.9440 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.1494 0.5390 2.5436 34 1 3.2847 -0.9411 3.6509 35 1 1.8310 -1.9683 3.6506 36 1 2.8379 1.4348 4.1105 37 1 1.3802 1.9214 5.0212 38 1 2.9320 2.2910 6.7321 39 1 4.1013 1.1128 6.0576 40 1 1.5543 0.5558 7.6699 41 1 3.1969 -0.1162 7.9185 42 1 -2.1986 -3.2357 7.7963 43 1 -0.4676 -0.1584 7.0311 44 1 -1.0668 -1.5786 6.1270 45 1 -0.2285 0.8039 4.9393 46 1 -0.2574 -0.7798 4.1099 47 1 0.5532 -2.2551 -1.4862 48 1 3.9981 -1.2694 -3.6796 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107366420.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:33 Heat of formation + Delta-G solvation = 61.437390 kcal Electronic energy + Delta-G solvation = -29584.594997 eV Core-core repulsion = 25676.242712 eV Total energy + Delta-G solvation = -3908.352285 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.11620 -41.44275 -40.38074 -36.37262 -36.06642 -35.42475 -33.33946 -32.41549 -32.05135 -30.97072 -29.38312 -28.44642 -26.47587 -25.63017 -25.27167 -23.24421 -22.85656 -22.08065 -21.63401 -20.95809 -19.85702 -19.10074 -18.57070 -18.11449 -16.97721 -16.72954 -16.71414 -16.33447 -15.99571 -15.67985 -15.59052 -15.28143 -15.14092 -15.05259 -14.65988 -14.37175 -14.08478 -13.70847 -13.53662 -13.38689 -13.35925 -13.29937 -12.87134 -12.82613 -12.52915 -12.47926 -12.15659 -11.98013 -11.82342 -11.62768 -11.58024 -11.56950 -11.38742 -11.30791 -11.05981 -11.05114 -10.79023 -10.70072 -10.52880 -10.18168 -8.85030 -7.72902 -5.18768 0.56690 1.18825 1.40535 1.44650 1.45789 1.54893 1.98079 2.12407 2.48991 3.30262 3.35533 3.45718 3.49893 3.61056 3.71139 3.76075 3.78813 3.96415 3.99483 4.26373 4.32094 4.39000 4.48547 4.55945 4.60865 4.64507 4.65503 4.68015 4.77456 4.92178 4.95919 5.06794 5.07998 5.14523 5.18526 5.24448 5.26432 5.33620 5.45019 5.46055 5.50134 5.51446 5.59953 5.72619 5.78135 5.91422 6.41996 6.42367 7.06430 7.09485 7.15043 7.82832 8.48258 9.24582 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014362 B = 0.003009 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.083548 B = 9301.891994 C =10303.268803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.144 3.856 3 H 0.154 0.846 4 C 0.499 3.501 5 O -0.580 6.580 6 N -0.695 5.695 7 C 0.156 3.844 8 C -0.071 4.071 9 C -0.102 4.102 10 C -0.113 4.113 11 C -0.132 4.132 12 C 0.153 3.847 13 H 0.052 0.948 14 N -0.610 5.610 15 C -0.228 4.228 16 H 0.074 0.926 17 C -0.065 4.065 18 N -0.943 5.943 19 Si 0.971 3.029 20 H -0.272 1.272 21 H -0.293 1.293 22 H -0.293 1.293 23 C 0.138 3.862 24 C -0.115 4.115 25 N -0.367 5.367 26 C 0.267 3.733 27 N -0.575 5.575 28 C 0.193 3.807 29 N -0.346 5.346 30 H 0.116 0.884 31 H 0.100 0.900 32 H 0.073 0.927 33 H 0.420 0.580 34 H 0.059 0.941 35 H 0.037 0.963 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.245 0.755 43 H -0.017 1.017 44 H 0.084 0.916 45 H 0.090 0.910 46 H 0.059 0.941 47 H 0.242 0.758 48 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.956 13.610 -15.664 20.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.037 3.963 3 H 0.171 0.829 4 C 0.284 3.716 5 O -0.459 6.459 6 N -0.348 5.348 7 C 0.032 3.968 8 C -0.073 4.073 9 C -0.140 4.140 10 C -0.151 4.151 11 C -0.172 4.172 12 C 0.045 3.955 13 H 0.070 0.930 14 N -0.331 5.331 15 C -0.357 4.357 16 H 0.092 0.908 17 C -0.257 4.257 18 N -0.594 5.594 19 Si 0.800 3.200 20 H -0.197 1.197 21 H -0.220 1.220 22 H -0.220 1.220 23 C 0.013 3.987 24 C -0.154 4.154 25 N -0.157 5.157 26 C -0.029 4.029 27 N -0.303 5.303 28 C -0.109 4.109 29 N -0.173 5.173 30 H 0.135 0.865 31 H 0.118 0.882 32 H 0.092 0.908 33 H 0.258 0.742 34 H 0.078 0.922 35 H 0.055 0.945 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.055 0.945 43 H 0.001 0.999 44 H 0.101 0.899 45 H 0.109 0.891 46 H 0.078 0.922 47 H 0.258 0.742 48 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 3.748 13.088 -15.657 20.748 hybrid contribution -0.401 -1.177 1.353 1.838 sum 3.347 11.911 -14.304 18.912 Atomic orbital electron populations 1.22294 0.86974 1.05357 1.07102 1.21479 0.98485 0.97903 0.78404 0.82853 1.21181 0.80163 0.84510 0.85754 1.90777 1.39592 1.28348 1.87188 1.45726 1.52913 1.32068 1.04077 1.21048 0.97956 0.94873 0.82941 1.21847 0.96138 0.96402 0.92941 1.22227 1.00235 0.93218 0.98318 1.22245 0.99248 0.98253 0.95364 1.22880 0.99392 0.96776 0.98154 1.21970 0.89757 0.91733 0.92019 0.93032 1.44830 1.02145 1.23741 1.62431 1.19421 0.92824 0.98108 1.25339 0.90839 1.25464 0.95165 1.02155 1.02953 1.69893 0.96803 1.40666 1.52022 0.85108 0.77464 0.79647 0.77750 1.19657 1.21992 1.22015 1.21674 0.92222 0.93201 0.91592 1.22583 0.93608 1.01073 0.98135 1.50225 1.18829 1.24776 1.21845 1.26507 0.99660 0.87601 0.89157 1.70579 1.08003 1.29567 1.22110 1.26592 0.97553 0.89385 0.97398 1.77944 1.04122 1.26383 1.08833 0.86509 0.88166 0.90772 0.74205 0.92233 0.94486 0.89992 0.89574 0.90420 0.91236 0.93482 0.93473 0.94453 0.99860 0.89859 0.89134 0.92229 0.74181 0.74033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 8.75 71.98 0.63 -0.55 16 2 C 0.14 2.16 3.77 44.25 0.17 2.33 16 3 H 0.15 1.61 8.14 -2.39 -0.02 1.59 16 4 C 0.50 11.60 7.22 87.66 0.63 12.23 16 5 O -0.58 -20.33 16.42 -3.01 -0.05 -20.38 16 6 N -0.70 -13.82 4.75 -463.06 -2.20 -16.02 16 7 C 0.16 4.42 4.29 86.38 0.37 4.79 16 8 C -0.07 -2.02 0.66 -51.21 -0.03 -2.05 16 9 C -0.10 -2.09 5.68 31.19 0.18 -1.91 16 10 C -0.11 -2.62 6.84 31.61 0.22 -2.40 16 11 C -0.13 -4.42 6.37 31.82 0.20 -4.21 16 12 C 0.15 5.81 3.59 46.05 0.17 5.97 16 13 H 0.05 2.05 7.95 -2.39 -0.02 2.03 16 14 N -0.61 -29.64 2.99 -666.00 -1.99 -31.63 16 15 C -0.23 -12.52 10.33 84.03 0.87 -11.65 16 16 H 0.07 3.98 7.83 -2.91 -0.02 3.95 16 17 C -0.07 -3.63 5.49 84.86 0.47 -3.16 16 18 N -0.94 -54.68 10.06 21.65 0.22 -54.46 16 19 Si 0.97 45.70 29.55 68.60 2.03 47.73 16 20 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 21 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 22 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 23 C 0.14 6.29 5.68 86.51 0.49 6.78 16 24 C -0.12 -3.56 5.73 31.11 0.18 -3.38 16 25 N -0.37 -7.88 3.04 -335.03 -1.02 -8.90 16 26 C 0.27 5.63 11.77 180.36 2.12 7.75 16 27 N -0.57 -14.20 11.19 -204.00 -2.28 -16.48 16 28 C 0.19 4.38 13.03 180.77 2.36 6.74 16 29 N -0.35 -8.67 12.70 -61.25 -0.78 -9.45 16 30 H 0.12 0.39 7.56 -2.39 -0.02 0.37 16 31 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.07 0.64 7.22 -2.39 -0.02 0.62 16 33 H 0.42 5.19 7.28 -92.71 -0.68 4.52 16 34 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.08 1.35 7.56 -2.39 -0.02 1.33 16 37 H 0.09 1.47 7.06 -2.39 -0.02 1.45 16 38 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.05 1.78 7.29 -2.39 -0.02 1.77 16 41 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 42 H 0.25 13.86 8.31 -92.70 -0.77 13.09 16 43 H -0.02 -0.81 7.72 -2.39 -0.02 -0.83 16 44 H 0.08 4.46 5.46 -2.39 -0.01 4.45 16 45 H 0.09 2.18 7.07 -2.39 -0.02 2.16 16 46 H 0.06 1.80 7.57 -2.39 -0.02 1.78 16 47 H 0.24 3.26 7.32 -2.91 -0.02 3.24 16 48 H 0.24 3.52 8.06 -2.91 -0.02 3.50 16 Total: -1.00 -80.14 379.47 3.24 -76.90 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: 0.30 Total: 15.41 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: 9.01 Total: 17.28 kcal Atomic # 7 Polarization: -128.89 SS G_CDS: -8.05 Total: -136.94 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -0.05 Total: -20.38 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -80.14 3.24 -76.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107366420.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.342 kcal (2) G-P(sol) polarization free energy of solvation -80.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds