Wall clock time and date at job start Tue Mar 31 2020 18:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21293 * 120.00033 * 2 1 4 4 N 1.34773 * 120.00094 * 179.97438 * 2 1 3 5 5 C 1.46534 * 124.99297 * 5.63690 * 4 2 1 6 6 C 1.53724 * 105.21294 * 180.02562 * 5 4 2 7 7 C 1.51228 * 104.61647 * 0.02562 * 6 5 4 8 8 C 1.38176 * 130.90844 * 180.34043 * 7 6 5 9 9 C 1.38659 * 120.10917 * 180.22477 * 8 7 6 10 10 O 1.35966 * 120.14403 * 179.70344 * 9 8 7 11 11 C 1.42903 * 116.99665 * 184.91760 * 10 9 8 12 12 H 1.08994 * 109.47421 * 35.64586 * 11 10 9 13 13 C 1.50697 * 109.46966 * 275.64182 * 11 10 9 14 14 H 1.07996 * 120.00377 * 354.73083 * 13 11 10 15 15 C 1.37876 * 119.99929 * 174.72938 * 13 11 10 16 16 N 1.31519 * 119.99921 * 353.80907 * 15 13 11 17 17 Si 1.86796 * 120.00329 * 173.80618 * 15 13 11 18 18 H 1.48501 * 109.47231 * 270.00459 * 17 15 13 19 19 H 1.48506 * 109.46776 * 29.99697 * 17 15 13 20 20 H 1.48496 * 109.47638 * 150.00180 * 17 15 13 21 21 C 1.53009 * 109.46878 * 155.64269 * 11 10 9 22 22 N 1.46899 * 109.47134 * 293.26827 * 21 11 10 23 23 C 1.46898 * 109.47237 * 62.90137 * 22 21 11 24 24 C 1.46899 * 109.46701 * 182.90354 * 22 21 11 25 25 C 1.46899 * 109.47207 * 302.89939 * 22 21 11 26 26 C 1.38742 * 119.71040 * 359.42608 * 9 8 7 27 27 C 1.37803 * 120.16315 * 0.25413 * 26 9 8 28 28 C 1.38537 * 108.57392 * 359.97438 * 7 6 5 29 29 H 1.08998 * 109.47159 * 185.06917 * 1 2 3 30 30 H 1.08998 * 109.47321 * 305.07058 * 1 2 3 31 31 H 1.08999 * 109.47219 * 65.06908 * 1 2 3 32 32 H 1.08998 * 110.29965 * 298.95896 * 5 4 2 33 33 H 1.09006 * 110.29008 * 61.08771 * 5 4 2 34 34 H 1.08999 * 110.41071 * 118.78335 * 6 5 4 35 35 H 1.08998 * 110.41112 * 241.21896 * 6 5 4 36 36 H 1.08003 * 119.94387 * 359.94769 * 8 7 6 37 37 H 0.97002 * 120.00228 * 358.22817 * 16 15 13 38 38 H 1.09001 * 109.46505 * 53.27183 * 21 11 10 39 39 H 1.08997 * 109.46765 * 173.26641 * 21 11 10 40 40 H 1.08999 * 109.46989 * 48.95145 * 23 22 21 41 41 H 1.08995 * 109.47143 * 168.94715 * 23 22 21 42 42 H 1.09000 * 109.47545 * 288.94990 * 23 22 21 43 43 H 1.09001 * 109.47581 * 59.99952 * 24 22 21 44 44 H 1.09002 * 109.46962 * 180.02562 * 24 22 21 45 45 H 1.09008 * 109.47114 * 299.99679 * 24 22 21 46 46 H 1.09002 * 109.47038 * 67.03753 * 25 22 21 47 47 H 1.09000 * 109.47440 * 187.03207 * 25 22 21 48 48 H 1.09003 * 109.47053 * 307.03881 * 25 22 21 49 49 H 1.07991 * 119.91647 * 180.27398 * 26 9 8 50 50 H 1.08002 * 119.82573 * 180.02562 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.5664 -2.4923 -0.1168 6 6 2.7380 -3.4862 -0.0646 7 6 3.9679 -2.6188 0.0839 8 6 5.3053 -2.9535 0.1765 9 6 6.2630 -1.9602 0.3141 10 8 7.5787 -2.2891 0.4113 11 6 8.4972 -1.2228 0.6591 12 1 8.0333 -0.4894 1.3186 13 6 8.8654 -0.5636 -0.6451 14 1 8.5086 -0.9750 -1.5777 15 6 9.6578 0.5647 -0.6478 16 7 9.9917 1.1364 0.4886 17 14 10.2572 1.2813 -2.2653 18 1 11.5605 0.6676 -2.6259 19 1 9.2637 0.9957 -3.3315 20 1 10.4239 2.7502 -2.1245 21 6 9.7583 -1.7799 1.3229 22 7 9.4262 -2.2782 2.6643 23 6 8.4713 -3.3887 2.5516 24 6 10.6491 -2.7493 3.3281 25 6 8.8264 -1.1948 3.4545 26 6 5.8733 -0.6290 0.3462 27 6 4.5400 -0.2953 0.2472 28 6 3.5711 -1.2919 0.1143 29 1 -0.3633 -1.0236 0.0908 30 1 -0.3634 0.5905 0.8411 31 1 -0.3633 0.4332 -0.9319 32 1 0.8844 -2.6679 0.7151 33 1 1.0373 -2.5809 -1.0657 34 1 2.6355 -4.1498 0.7940 35 1 2.7886 -4.0630 -0.9881 36 1 5.6049 -3.9907 0.1462 37 1 9.6594 0.7795 1.3272 38 1 10.1556 -2.5964 0.7199 39 1 10.5056 -0.9905 1.4031 40 1 8.8306 -4.1032 1.8110 41 1 8.3748 -3.8843 3.5176 42 1 7.4999 -3.0027 2.2427 43 1 11.3577 -1.9252 3.4117 44 1 10.4027 -3.1194 4.3233 45 1 11.0942 -3.5532 2.7417 46 1 7.8573 -0.9302 3.0315 47 1 8.6950 -1.5262 4.4845 48 1 9.4819 -0.3241 3.4337 49 1 6.6168 0.1475 0.4488 50 1 4.2427 0.7427 0.2725 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233647754.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:43 Heat of formation + Delta-G solvation = 68.636335 kcal Electronic energy + Delta-G solvation = -30355.742539 eV Core-core repulsion = 26467.179844 eV Total energy + Delta-G solvation = -3888.562694 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.197 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.56406 -42.04244 -40.31119 -38.95035 -36.62624 -35.27301 -33.31249 -31.96101 -31.16150 -30.53558 -30.40758 -30.03317 -28.97777 -27.56845 -25.22415 -24.52767 -23.99844 -23.42142 -21.70440 -20.54655 -19.57477 -19.03396 -18.57948 -18.40118 -18.16350 -17.92959 -17.34560 -17.19759 -16.36933 -15.84384 -15.55683 -15.43395 -15.25965 -15.11308 -15.03964 -14.62617 -14.37471 -14.32456 -14.19914 -14.12438 -13.99451 -13.92832 -13.69558 -13.60612 -13.55811 -13.43677 -13.33914 -13.04685 -12.96196 -12.83941 -12.55667 -12.33206 -11.96631 -11.48315 -11.29384 -10.83135 -10.78424 -10.25330 -10.04844 -9.67311 -8.33033 -8.14268 -6.04423 0.14561 0.43040 0.52427 1.67784 1.80787 2.03780 2.16068 2.19099 2.27676 2.37763 2.42926 2.50419 2.92039 3.06059 3.08689 3.10070 3.29529 3.32321 3.41473 3.45795 3.46491 3.51940 3.62673 3.64335 3.76818 3.77351 3.87870 3.92306 3.93435 4.03314 4.10943 4.15124 4.24435 4.28922 4.36675 4.40429 4.53816 4.59744 4.72384 4.75384 4.78232 4.83795 4.96712 5.22625 5.47984 5.64223 5.69152 5.84816 5.94314 6.41882 6.49990 6.79618 6.99885 7.07921 7.63750 9.15116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.518 3.482 3 O -0.522 6.522 4 N -0.556 5.556 5 C 0.101 3.899 6 C -0.084 4.084 7 C -0.105 4.105 8 C -0.123 4.123 9 C 0.118 3.882 10 O -0.323 6.323 11 C 0.187 3.813 12 H 0.046 0.954 13 C -0.618 4.618 14 H 0.079 0.921 15 C 0.041 3.959 16 N -0.881 5.881 17 Si 1.067 2.933 18 H -0.278 1.278 19 H -0.279 1.279 20 H -0.275 1.275 21 C -0.012 4.012 22 N -0.271 5.271 23 C -0.041 4.041 24 C -0.043 4.043 25 C -0.046 4.046 26 C -0.160 4.160 27 C -0.092 4.092 28 C 0.105 3.895 29 H 0.079 0.921 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.129 0.871 37 H 0.260 0.740 38 H 0.123 0.877 39 H 0.141 0.859 40 H 0.117 0.883 41 H 0.103 0.897 42 H 0.129 0.871 43 H 0.116 0.884 44 H 0.112 0.888 45 H 0.115 0.885 46 H 0.117 0.883 47 H 0.113 0.887 48 H 0.121 0.879 49 H 0.146 0.854 50 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.201 -14.336 12.143 18.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.309 3.691 3 O -0.398 6.398 4 N -0.282 5.282 5 C -0.021 4.021 6 C -0.121 4.121 7 C -0.108 4.108 8 C -0.142 4.142 9 C 0.073 3.927 10 O -0.239 6.239 11 C 0.131 3.869 12 H 0.063 0.937 13 C -0.655 4.655 14 H 0.097 0.903 15 C -0.166 4.166 16 N -0.514 5.514 17 Si 0.891 3.109 18 H -0.204 1.204 19 H -0.204 1.204 20 H -0.200 1.200 21 C -0.131 4.131 22 N 0.071 4.929 23 C -0.182 4.182 24 C -0.185 4.185 25 C -0.187 4.187 26 C -0.179 4.179 27 C -0.112 4.112 28 C 0.011 3.989 29 H 0.098 0.902 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.147 0.853 37 H 0.071 0.929 38 H 0.141 0.859 39 H 0.159 0.841 40 H 0.135 0.865 41 H 0.122 0.878 42 H 0.147 0.853 43 H 0.135 0.865 44 H 0.131 0.869 45 H 0.134 0.866 46 H 0.136 0.864 47 H 0.131 0.869 48 H 0.140 0.860 49 H 0.164 0.836 50 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.012 -12.635 11.473 17.097 hybrid contribution -0.890 -1.008 0.502 1.436 sum -1.902 -13.643 11.975 18.253 Atomic orbital electron populations 1.21905 0.90306 1.04752 1.05923 1.20861 0.90868 0.81888 0.75491 1.90737 1.70514 1.30596 1.47907 1.45982 1.05041 1.07331 1.69814 1.22161 0.96493 0.80445 1.03000 1.21084 0.90050 0.96966 1.04033 1.19634 0.93704 0.93089 1.04335 1.19412 0.89334 0.98562 1.06885 1.18513 0.83045 0.92582 0.98608 1.85890 1.13935 1.37226 1.86804 1.20504 0.83361 0.84551 0.98485 0.93683 1.22287 1.37488 1.13529 0.92149 0.90280 1.26120 0.92925 0.93016 1.04582 1.71173 1.42280 1.40077 0.97918 0.83465 0.76980 0.77506 0.72928 1.20377 1.20441 1.19977 1.25120 1.05555 1.04625 0.77798 1.46354 1.14682 1.15143 1.16754 1.24289 0.96875 0.90377 1.06671 1.24069 0.87382 1.05510 1.01545 1.24121 1.04379 0.91909 0.98314 1.21310 0.96251 0.96049 1.04301 1.20808 0.90839 0.99615 0.99952 1.18281 0.83353 0.94279 1.03002 0.90187 0.88156 0.88136 0.89701 0.89690 0.88952 0.88814 0.85312 0.92904 0.85874 0.84128 0.86481 0.87804 0.85261 0.86503 0.86938 0.86617 0.86434 0.86851 0.86034 0.83606 0.84313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.23 10.18 36.00 0.37 0.59 16 2 C 0.52 1.72 7.89 -10.99 -0.09 1.63 16 3 O -0.52 -4.04 15.30 5.55 0.08 -3.95 16 4 N -0.56 -1.22 3.13 -112.85 -0.35 -1.57 16 5 C 0.10 -0.21 6.11 -3.65 -0.02 -0.23 16 6 C -0.08 0.18 6.93 -27.25 -0.19 -0.01 16 7 C -0.10 -0.14 6.22 -104.28 -0.65 -0.79 16 8 C -0.12 -0.11 9.98 -39.45 -0.39 -0.51 16 9 C 0.12 0.27 6.03 -39.24 -0.24 0.03 16 10 O -0.32 -0.24 6.80 -19.63 -0.13 -0.37 16 11 C 0.19 0.25 0.84 -27.88 -0.02 0.23 16 12 H 0.05 0.07 3.63 -51.93 -0.19 -0.12 16 13 C -0.62 -4.73 7.84 -34.44 -0.27 -5.00 16 14 H 0.08 0.82 7.82 -52.49 -0.41 0.41 16 15 C 0.04 0.38 5.20 -17.82 -0.09 0.29 16 16 N -0.88 -8.35 12.89 55.43 0.71 -7.64 16 17 Si 1.07 9.66 29.91 -169.99 -5.08 4.58 16 18 H -0.28 -2.40 7.11 56.52 0.40 -2.00 16 19 H -0.28 -2.67 7.11 56.52 0.40 -2.27 16 20 H -0.27 -2.86 7.11 56.52 0.40 -2.46 16 21 C -0.01 0.04 3.46 -3.82 -0.01 0.03 16 22 N -0.27 2.59 0.05 -395.62 -0.02 2.57 16 23 C -0.04 0.41 7.06 60.06 0.42 0.83 16 24 C -0.04 0.53 7.98 60.06 0.48 1.01 16 25 C -0.05 0.43 7.48 60.06 0.45 0.88 16 26 C -0.16 -0.71 8.68 -39.55 -0.34 -1.06 16 27 C -0.09 -0.50 9.46 -39.22 -0.37 -0.87 16 28 C 0.10 0.40 6.63 -83.48 -0.55 -0.15 16 29 H 0.08 -0.31 6.51 -51.93 -0.34 -0.65 16 30 H 0.10 -0.18 8.14 -51.93 -0.42 -0.61 16 31 H 0.10 -0.18 8.14 -51.93 -0.42 -0.61 16 32 H 0.08 -0.36 7.79 -51.93 -0.40 -0.77 16 33 H 0.08 -0.30 8.14 -51.93 -0.42 -0.72 16 34 H 0.09 -0.37 8.14 -51.93 -0.42 -0.80 16 35 H 0.09 -0.28 8.14 -51.93 -0.42 -0.71 16 36 H 0.13 -0.17 8.06 -52.48 -0.42 -0.60 16 37 H 0.26 1.64 6.01 -40.82 -0.25 1.39 16 38 H 0.12 -0.51 8.00 -51.93 -0.42 -0.93 16 39 H 0.14 -0.26 6.20 -51.93 -0.32 -0.58 16 40 H 0.12 -1.14 7.93 -51.93 -0.41 -1.55 16 41 H 0.10 -1.32 7.97 -51.93 -0.41 -1.73 16 42 H 0.13 -0.95 5.17 -51.93 -0.27 -1.22 16 43 H 0.12 -1.39 8.13 -51.93 -0.42 -1.81 16 44 H 0.11 -1.61 8.01 -51.93 -0.42 -2.02 16 45 H 0.12 -1.47 8.14 -51.92 -0.42 -1.89 16 46 H 0.12 -0.86 6.14 -51.93 -0.32 -1.18 16 47 H 0.11 -1.40 8.05 -51.93 -0.42 -1.82 16 48 H 0.12 -1.02 8.02 -51.93 -0.42 -1.44 16 49 H 0.15 0.85 5.68 -52.49 -0.30 0.55 16 50 H 0.14 1.01 6.30 -52.49 -0.33 0.68 16 LS Contribution 381.66 15.07 5.75 5.75 Total: 0.00 -20.80 381.66 -8.36 -29.16 By element: Atomic # 1 Polarization: -17.65 SS G_CDS: -7.79 Total: -25.44 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: -1.53 Total: -3.08 kcal Atomic # 7 Polarization: -6.98 SS G_CDS: 0.34 Total: -6.64 kcal Atomic # 8 Polarization: -4.27 SS G_CDS: -0.05 Total: -4.32 kcal Atomic # 14 Polarization: 9.66 SS G_CDS: -5.08 Total: 4.58 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -20.80 -8.36 -29.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233647754.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.797 kcal (2) G-P(sol) polarization free energy of solvation -20.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds