Wall clock time and date at job start Tue Mar 31 2020 18:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46503 * 109.47008 * 2 1 4 4 C 1.34775 * 120.00513 * 84.14342 * 3 2 1 5 5 O 1.21283 * 120.00438 * 185.14662 * 4 3 2 6 6 C 1.50703 * 119.99635 * 5.14975 * 4 3 2 7 7 N 1.46496 * 109.47304 * 180.02562 * 6 4 3 8 8 C 1.35306 * 125.87023 * 124.71062 * 7 6 4 9 9 C 1.35359 * 106.17654 * 179.90926 * 8 7 6 10 10 C 1.50699 * 126.75183 * 180.13282 * 9 8 7 11 11 C 1.53005 * 117.49763 * 344.03236 * 10 9 8 12 12 C 1.53000 * 117.49340 * 275.37487 * 10 9 8 13 13 N 1.33768 * 106.49299 * 0.34911 * 9 8 7 14 14 N 1.28639 * 108.88970 * 359.78027 * 13 9 8 15 15 C 1.46507 * 119.99667 * 264.14674 * 3 2 1 16 16 H 1.09004 * 110.88494 * 180.18840 * 15 3 2 17 17 C 1.55154 * 111.00613 * 56.30927 * 15 3 2 18 18 C 1.54325 * 102.93958 * 277.42667 * 17 15 3 19 19 N 1.47024 * 107.27440 * 337.80774 * 18 17 15 20 20 C 1.36930 * 125.64754 * 178.98913 * 19 18 17 21 21 H 1.08001 * 119.99600 * 179.97438 * 20 19 18 22 22 C 1.38806 * 120.00384 * 359.97157 * 20 19 18 23 23 N 1.31620 * 119.99767 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00202 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47240 * 0.02562 * 24 22 20 26 26 H 1.48509 * 109.47183 * 120.00125 * 24 22 20 27 27 H 1.48503 * 109.47349 * 240.00112 * 24 22 20 28 28 C 1.47429 * 108.70051 * 358.93938 * 19 18 17 29 29 H 1.09000 * 109.47401 * 54.42905 * 1 2 3 30 30 H 1.09004 * 109.47166 * 294.42845 * 1 2 3 31 31 H 1.09002 * 109.46942 * 174.42894 * 1 2 3 32 32 H 1.09003 * 109.47546 * 119.99832 * 2 1 3 33 33 H 1.09004 * 109.47286 * 240.00053 * 2 1 3 34 34 H 1.09000 * 109.46894 * 299.99878 * 6 4 3 35 35 H 1.09002 * 109.47233 * 59.99313 * 6 4 3 36 36 H 1.08005 * 126.91517 * 0.02562 * 8 7 6 37 37 H 1.08993 * 115.55379 * 129.71276 * 10 9 8 38 38 H 1.08995 * 117.49703 * 0.02562 * 11 10 9 39 39 H 1.09003 * 117.49211 * 145.02708 * 11 10 9 40 40 H 1.09005 * 117.50040 * 214.97849 * 12 10 9 41 41 H 1.09000 * 117.50070 * 0.02562 * 12 10 9 42 42 H 1.09000 * 110.71962 * 35.79025 * 17 15 3 43 43 H 1.08997 * 110.71794 * 159.06425 * 17 15 3 44 44 H 1.08994 * 109.88354 * 97.22647 * 18 17 15 45 45 H 1.09006 * 109.88140 * 218.23502 * 18 17 15 46 46 H 0.97006 * 120.00102 * 179.97438 * 23 22 20 47 47 H 1.08998 * 110.36740 * 265.29211 * 28 19 18 48 48 H 1.08997 * 110.36723 * 142.96547 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1306 2.0564 1.1610 5 8 2.4451 3.2277 1.1535 6 6 1.8656 1.3558 2.4687 7 7 2.0523 2.2984 3.5744 8 6 1.1394 2.5913 4.5293 9 6 1.7244 3.5002 5.3441 10 6 1.1155 4.1405 6.5649 11 6 -0.4016 4.0377 6.7342 12 6 0.2372 5.3750 6.3512 13 7 2.9475 3.7218 4.8497 14 7 3.1109 2.9947 3.8012 15 6 2.3844 2.0287 -1.2622 16 1 2.7297 3.0482 -1.0902 17 6 1.1998 2.0044 -2.2639 18 6 1.3042 0.5971 -2.8886 19 7 2.6893 0.1395 -2.7045 20 6 3.1891 -1.0717 -3.1023 21 1 4.2257 -1.3141 -2.9205 22 6 2.3634 -1.9880 -3.7390 23 7 1.1002 -1.6924 -3.9609 24 14 3.0455 -3.6400 -4.2823 25 1 4.4828 -3.7257 -3.9192 26 1 2.2986 -4.7307 -3.6056 27 1 2.8970 -3.7772 -5.7535 28 6 3.4511 1.2011 -2.0218 29 1 -0.3634 0.5978 -0.8359 30 1 -0.3634 0.4250 0.9357 31 1 -0.3633 -1.0228 -0.0998 32 1 1.8934 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 0.8418 0.9818 2.4795 35 1 2.5582 0.5216 2.5809 36 1 0.1449 2.1808 4.6236 37 1 1.7261 4.1074 7.4671 38 1 -0.9592 3.5065 5.9629 39 1 -0.7891 3.9372 7.7481 40 1 0.2696 6.1537 7.1132 41 1 0.0995 5.7237 5.3277 42 1 0.2506 2.1251 -1.7417 43 1 1.3228 2.7745 -3.0254 44 1 0.6187 -0.0841 -2.3845 45 1 1.0651 0.6444 -3.9510 46 1 0.5232 -2.3326 -4.4062 47 1 3.9678 1.8257 -2.7504 48 1 4.1635 0.7660 -1.3209 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269330096.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:42 Heat of formation + Delta-G solvation = 137.863239 kcal Electronic energy + Delta-G solvation = -29510.366751 eV Core-core repulsion = 25605.328539 eV Total energy + Delta-G solvation = -3905.038211 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.33288 -40.17974 -37.84264 -37.43271 -34.87332 -34.42083 -32.47299 -30.79587 -30.49484 -29.58018 -28.73972 -26.96176 -24.62048 -24.24300 -23.30300 -22.87047 -22.18875 -21.01617 -20.37226 -20.19373 -18.69351 -17.84452 -17.34696 -16.99574 -16.50486 -15.78969 -15.41671 -15.31656 -14.87969 -14.75099 -14.64671 -14.17210 -13.88485 -13.66540 -13.21068 -12.94502 -12.61096 -12.51607 -12.20828 -12.05901 -11.99940 -11.84158 -11.62550 -11.37998 -11.29185 -11.10642 -11.01388 -10.95838 -10.90630 -10.64595 -10.49466 -10.44871 -10.20852 -10.19010 -10.01793 -9.77536 -9.48770 -9.11168 -8.79973 -8.41363 -6.95062 -5.86318 -3.20902 1.50109 2.08910 2.45467 2.52548 3.11859 3.29795 3.37605 3.38698 3.51473 4.02737 4.26753 4.37407 4.40340 4.59134 4.60622 4.67979 4.69764 4.97967 5.16634 5.21692 5.26311 5.33232 5.33558 5.36074 5.53350 5.54796 5.61190 5.64252 5.67422 5.77863 5.80737 5.89394 5.98841 6.04654 6.05210 6.21874 6.34876 6.37281 6.41452 6.50421 6.57873 6.66058 6.94016 7.43288 7.46591 7.58524 7.69711 8.09315 8.16664 8.52137 9.07135 9.66141 10.31002 11.24403 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.024452 B = 0.002575 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.842323 B =10869.151354 C =10978.746342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.073 3.927 3 N -0.577 5.577 4 C 0.501 3.499 5 O -0.524 6.524 6 C 0.095 3.905 7 N -0.277 5.277 8 C -0.050 4.050 9 C 0.006 3.994 10 C -0.069 4.069 11 C -0.171 4.171 12 C -0.166 4.166 13 N -0.268 5.268 14 N -0.049 5.049 15 C 0.125 3.875 16 H 0.100 0.900 17 C -0.157 4.157 18 C 0.168 3.832 19 N -0.602 5.602 20 C -0.232 4.232 21 H 0.079 0.921 22 C -0.004 4.004 23 N -0.919 5.919 24 Si 0.910 3.090 25 H -0.280 1.280 26 H -0.290 1.290 27 H -0.291 1.291 28 C 0.124 3.876 29 H 0.071 0.929 30 H 0.037 0.963 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.145 0.855 34 H 0.133 0.867 35 H 0.129 0.871 36 H 0.187 0.813 37 H 0.121 0.879 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.095 0.905 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.060 0.940 45 H 0.042 0.958 46 H 0.253 0.747 47 H 0.033 0.967 48 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.209 5.706 16.998 18.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.049 4.049 3 N -0.309 5.309 4 C 0.285 3.715 5 O -0.400 6.400 6 C -0.030 4.030 7 N -0.070 5.070 8 C -0.200 4.200 9 C -0.131 4.131 10 C -0.089 4.089 11 C -0.209 4.209 12 C -0.203 4.203 13 N -0.135 5.135 14 N -0.028 5.028 15 C 0.021 3.979 16 H 0.118 0.882 17 C -0.196 4.196 18 C 0.043 3.957 19 N -0.329 5.329 20 C -0.360 4.360 21 H 0.097 0.903 22 C -0.201 4.201 23 N -0.566 5.566 24 Si 0.741 3.259 25 H -0.205 1.205 26 H -0.217 1.217 27 H -0.217 1.217 28 C -0.003 4.003 29 H 0.090 0.910 30 H 0.056 0.944 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.162 0.838 34 H 0.151 0.849 35 H 0.147 0.853 36 H 0.204 0.796 37 H 0.139 0.861 38 H 0.114 0.886 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.114 0.886 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.078 0.922 45 H 0.060 0.940 46 H 0.063 0.937 47 H 0.051 0.949 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.665 6.430 16.344 18.172 hybrid contribution -0.931 -1.431 -0.276 1.729 sum -5.596 4.999 16.068 17.733 Atomic orbital electron populations 1.22304 0.96046 1.02986 1.01178 1.22271 0.94393 0.81734 1.06542 1.47782 1.63248 1.14510 1.05362 1.20101 0.78971 0.87314 0.85067 1.90785 1.47227 1.15382 1.86625 1.22055 1.06568 0.90779 0.83560 1.46799 1.10863 1.29564 1.19785 1.23220 0.98662 1.04684 0.93406 1.20961 0.92882 1.00052 0.99236 1.19969 0.92387 1.01742 0.94829 1.23027 0.93827 1.00902 1.03099 1.23019 1.02828 0.91292 1.03202 1.75075 1.16427 1.17779 1.04195 1.78471 1.08899 1.03847 1.11622 1.22297 0.96602 0.96899 0.82087 0.88170 1.23306 0.97259 1.01206 0.97868 1.21371 0.86700 0.88679 0.98900 1.44629 1.06423 1.13822 1.68073 1.19090 0.95030 0.89732 1.32179 0.90324 1.24781 0.95921 0.98681 1.00716 1.69966 1.04424 1.35095 1.47105 0.86078 0.78039 0.83621 0.78210 1.20511 1.21720 1.21746 1.21927 0.93301 0.90957 0.94099 0.91015 0.94439 0.91142 0.92138 0.83752 0.84917 0.85280 0.79550 0.86123 0.88606 0.87995 0.88113 0.88609 0.91678 0.91322 0.92230 0.93992 0.93699 0.94911 0.93601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 9.19 37.15 0.34 -1.82 16 2 C 0.07 1.06 4.89 -4.04 -0.02 1.04 16 3 N -0.58 -8.89 2.53 -163.66 -0.41 -9.30 16 4 C 0.50 7.66 7.63 -10.98 -0.08 7.58 16 5 O -0.52 -10.12 15.07 5.55 0.08 -10.04 16 6 C 0.10 1.07 5.48 -5.19 -0.03 1.04 16 7 N -0.28 -3.74 3.20 -62.44 -0.20 -3.94 16 8 C -0.05 -0.55 10.89 -17.05 -0.19 -0.74 16 9 C 0.01 0.08 6.88 -82.78 -0.57 -0.49 16 10 C -0.07 -0.64 6.33 -91.77 -0.58 -1.22 16 11 C -0.17 -1.13 10.03 -26.69 -0.27 -1.40 16 12 C -0.17 -1.34 10.24 -26.69 -0.27 -1.61 16 13 N -0.27 -4.41 12.41 33.29 0.41 -4.00 16 14 N -0.05 -0.83 12.13 60.35 0.73 -0.10 16 15 C 0.13 2.15 3.66 -65.78 -0.24 1.91 16 16 H 0.10 1.77 7.02 -51.93 -0.36 1.41 16 17 C -0.16 -2.74 6.00 -24.90 -0.15 -2.89 16 18 C 0.17 3.58 4.17 -3.06 -0.01 3.57 16 19 N -0.60 -13.58 1.91 -170.07 -0.33 -13.90 16 20 C -0.23 -5.83 9.91 -15.06 -0.15 -5.98 16 21 H 0.08 1.95 7.83 -52.49 -0.41 1.54 16 22 C 0.00 -0.11 5.49 -17.43 -0.10 -0.21 16 23 N -0.92 -24.38 10.31 55.49 0.57 -23.81 16 24 Si 0.91 20.57 29.55 -169.99 -5.02 15.55 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 27 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 28 C 0.12 2.40 6.55 -2.53 -0.02 2.38 16 29 H 0.07 1.06 4.89 -51.93 -0.25 0.80 16 30 H 0.04 0.38 6.80 -51.93 -0.35 0.02 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.71 6.67 -51.93 -0.35 0.36 16 33 H 0.14 2.74 4.28 -51.93 -0.22 2.52 16 34 H 0.13 1.02 6.60 -51.93 -0.34 0.67 16 35 H 0.13 1.21 7.58 -51.93 -0.39 0.81 16 36 H 0.19 1.28 7.44 -52.48 -0.39 0.89 16 37 H 0.12 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.10 0.57 7.22 -51.93 -0.37 0.20 16 39 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.06 1.06 6.58 -51.93 -0.34 0.71 16 43 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.06 1.32 4.63 -51.93 -0.24 1.08 16 45 H 0.04 1.04 7.50 -51.93 -0.39 0.65 16 46 H 0.25 6.60 8.31 -40.82 -0.34 6.26 16 47 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 374.26 15.07 5.64 5.64 Total: -1.00 -32.08 374.26 -7.80 -39.88 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -6.94 Total: 2.85 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: -2.33 Total: 1.17 kcal Atomic # 7 Polarization: -55.82 SS G_CDS: 0.78 Total: -55.04 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.08 Total: -10.04 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.08 -7.80 -39.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269330096.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.743 kcal (2) G-P(sol) polarization free energy of solvation -32.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds