Wall clock time and date at job start Tue Mar 31 2020 18:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46503 * 109.47008 * 2 1 4 4 C 1.34775 * 120.00513 * 84.14342 * 3 2 1 5 5 O 1.21283 * 120.00438 * 185.14662 * 4 3 2 6 6 C 1.50703 * 119.99635 * 5.14975 * 4 3 2 7 7 N 1.46496 * 109.47304 * 180.02562 * 6 4 3 8 8 C 1.35306 * 125.87023 * 124.71062 * 7 6 4 9 9 C 1.35359 * 106.17654 * 179.90926 * 8 7 6 10 10 C 1.50699 * 126.75183 * 180.13282 * 9 8 7 11 11 C 1.53005 * 117.49763 * 344.03236 * 10 9 8 12 12 C 1.53000 * 117.49340 * 275.37487 * 10 9 8 13 13 N 1.33768 * 106.49299 * 0.34911 * 9 8 7 14 14 N 1.28639 * 108.88970 * 359.78027 * 13 9 8 15 15 C 1.46507 * 119.99667 * 264.14674 * 3 2 1 16 16 H 1.09004 * 110.88494 * 180.18840 * 15 3 2 17 17 C 1.55154 * 111.00613 * 56.30927 * 15 3 2 18 18 C 1.54325 * 102.93958 * 277.42667 * 17 15 3 19 19 N 1.47024 * 107.27440 * 337.80774 * 18 17 15 20 20 C 1.36930 * 125.64754 * 178.98913 * 19 18 17 21 21 H 1.08001 * 119.99600 * 179.97438 * 20 19 18 22 22 C 1.38806 * 120.00384 * 359.97157 * 20 19 18 23 23 N 1.31620 * 119.99767 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00202 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47240 * 0.02562 * 24 22 20 26 26 H 1.48509 * 109.47183 * 120.00125 * 24 22 20 27 27 H 1.48503 * 109.47349 * 240.00112 * 24 22 20 28 28 C 1.47429 * 108.70051 * 358.93938 * 19 18 17 29 29 H 1.09000 * 109.47401 * 54.42905 * 1 2 3 30 30 H 1.09004 * 109.47166 * 294.42845 * 1 2 3 31 31 H 1.09002 * 109.46942 * 174.42894 * 1 2 3 32 32 H 1.09003 * 109.47546 * 119.99832 * 2 1 3 33 33 H 1.09004 * 109.47286 * 240.00053 * 2 1 3 34 34 H 1.09000 * 109.46894 * 299.99878 * 6 4 3 35 35 H 1.09002 * 109.47233 * 59.99313 * 6 4 3 36 36 H 1.08005 * 126.91517 * 0.02562 * 8 7 6 37 37 H 1.08993 * 115.55379 * 129.71276 * 10 9 8 38 38 H 1.08995 * 117.49703 * 0.02562 * 11 10 9 39 39 H 1.09003 * 117.49211 * 145.02708 * 11 10 9 40 40 H 1.09005 * 117.50040 * 214.97849 * 12 10 9 41 41 H 1.09000 * 117.50070 * 0.02562 * 12 10 9 42 42 H 1.09000 * 110.71962 * 35.79025 * 17 15 3 43 43 H 1.08997 * 110.71794 * 159.06425 * 17 15 3 44 44 H 1.08994 * 109.88354 * 97.22647 * 18 17 15 45 45 H 1.09006 * 109.88140 * 218.23502 * 18 17 15 46 46 H 0.97006 * 120.00102 * 179.97438 * 23 22 20 47 47 H 1.08998 * 110.36740 * 265.29211 * 28 19 18 48 48 H 1.08997 * 110.36723 * 142.96547 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1306 2.0564 1.1610 5 8 2.4451 3.2277 1.1535 6 6 1.8656 1.3558 2.4687 7 7 2.0523 2.2984 3.5744 8 6 1.1394 2.5913 4.5293 9 6 1.7244 3.5002 5.3441 10 6 1.1155 4.1405 6.5649 11 6 -0.4016 4.0377 6.7342 12 6 0.2372 5.3750 6.3512 13 7 2.9475 3.7218 4.8497 14 7 3.1109 2.9947 3.8012 15 6 2.3844 2.0287 -1.2622 16 1 2.7297 3.0482 -1.0902 17 6 1.1998 2.0044 -2.2639 18 6 1.3042 0.5971 -2.8886 19 7 2.6893 0.1395 -2.7045 20 6 3.1891 -1.0717 -3.1023 21 1 4.2257 -1.3141 -2.9205 22 6 2.3634 -1.9880 -3.7390 23 7 1.1002 -1.6924 -3.9609 24 14 3.0455 -3.6400 -4.2823 25 1 4.4828 -3.7257 -3.9192 26 1 2.2986 -4.7307 -3.6056 27 1 2.8970 -3.7772 -5.7535 28 6 3.4511 1.2011 -2.0218 29 1 -0.3634 0.5978 -0.8359 30 1 -0.3634 0.4250 0.9357 31 1 -0.3633 -1.0228 -0.0998 32 1 1.8934 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 0.8418 0.9818 2.4795 35 1 2.5582 0.5216 2.5809 36 1 0.1449 2.1808 4.6236 37 1 1.7261 4.1074 7.4671 38 1 -0.9592 3.5065 5.9629 39 1 -0.7891 3.9372 7.7481 40 1 0.2696 6.1537 7.1132 41 1 0.0995 5.7237 5.3277 42 1 0.2506 2.1251 -1.7417 43 1 1.3228 2.7745 -3.0254 44 1 0.6187 -0.0841 -2.3845 45 1 1.0651 0.6444 -3.9510 46 1 0.5232 -2.3326 -4.4062 47 1 3.9678 1.8257 -2.7504 48 1 4.1635 0.7660 -1.3209 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269330096.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:41 Heat of formation + Delta-G solvation = 118.579708 kcal Electronic energy + Delta-G solvation = -29511.202947 eV Core-core repulsion = 25605.328539 eV Total energy + Delta-G solvation = -3905.874408 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.29485 -41.46691 -39.24092 -38.12925 -36.26541 -35.48483 -34.17839 -31.80780 -31.69303 -31.15850 -29.89256 -28.44644 -26.40880 -25.03285 -24.38948 -23.77629 -23.05232 -22.06122 -21.91963 -21.36193 -19.91769 -18.91139 -18.89793 -18.25144 -17.62425 -16.80522 -16.65208 -16.52511 -16.26191 -15.77937 -15.62563 -15.43007 -15.37398 -14.78758 -14.48789 -14.16199 -13.79072 -13.77694 -13.64315 -13.35993 -13.32349 -12.91388 -12.85957 -12.61013 -12.53359 -12.29133 -12.23404 -12.17323 -12.10698 -11.97300 -11.80044 -11.72376 -11.67784 -11.52684 -11.29462 -11.17538 -10.70262 -10.67634 -9.98087 -9.76233 -8.79161 -7.81557 -5.16231 0.57013 1.20911 1.37568 1.48578 1.49717 1.51977 1.59548 1.96730 2.51283 2.89176 3.13332 3.35495 3.38591 3.63286 3.67414 3.85928 3.88431 3.91529 3.99499 4.01284 4.06648 4.19923 4.27951 4.28687 4.40163 4.47009 4.59425 4.65169 4.73736 4.79048 4.84166 4.86448 4.93083 4.96673 4.99579 5.04421 5.20776 5.24757 5.27580 5.32115 5.45013 5.51266 5.53156 5.65839 5.70375 5.85217 6.22455 6.38587 6.97709 7.14357 7.52320 7.78203 8.42766 9.27615 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.024452 B = 0.002575 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.842323 B =10869.151354 C =10978.746342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.074 3.926 3 N -0.575 5.575 4 C 0.501 3.499 5 O -0.569 6.569 6 C 0.097 3.903 7 N -0.278 5.278 8 C -0.033 4.033 9 C -0.008 4.008 10 C -0.091 4.091 11 C -0.142 4.142 12 C -0.175 4.175 13 N -0.308 5.308 14 N -0.103 5.103 15 C 0.136 3.864 16 H 0.098 0.902 17 C -0.143 4.143 18 C 0.181 3.819 19 N -0.612 5.612 20 C -0.237 4.237 21 H 0.077 0.923 22 C -0.051 4.051 23 N -0.940 5.940 24 Si 0.968 3.032 25 H -0.273 1.273 26 H -0.289 1.289 27 H -0.300 1.300 28 C 0.124 3.876 29 H 0.049 0.951 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.179 0.821 35 H 0.152 0.848 36 H 0.236 0.764 37 H 0.123 0.877 38 H 0.108 0.892 39 H 0.124 0.876 40 H 0.113 0.887 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.051 0.949 45 H 0.000 1.000 46 H 0.247 0.753 47 H 0.031 0.969 48 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.004 4.864 19.387 21.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.048 4.048 3 N -0.307 5.307 4 C 0.288 3.712 5 O -0.448 6.448 6 C -0.026 4.026 7 N -0.072 5.072 8 C -0.183 4.183 9 C -0.146 4.146 10 C -0.111 4.111 11 C -0.179 4.179 12 C -0.213 4.213 13 N -0.174 5.174 14 N -0.081 5.081 15 C 0.031 3.969 16 H 0.116 0.884 17 C -0.182 4.182 18 C 0.056 3.944 19 N -0.339 5.339 20 C -0.365 4.365 21 H 0.095 0.905 22 C -0.245 4.245 23 N -0.589 5.589 24 Si 0.797 3.203 25 H -0.197 1.197 26 H -0.215 1.215 27 H -0.228 1.228 28 C -0.002 4.002 29 H 0.068 0.932 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.114 0.886 33 H 0.120 0.880 34 H 0.196 0.804 35 H 0.169 0.831 36 H 0.252 0.748 37 H 0.141 0.859 38 H 0.127 0.873 39 H 0.142 0.858 40 H 0.131 0.869 41 H 0.097 0.903 42 H 0.100 0.900 43 H 0.093 0.907 44 H 0.069 0.931 45 H 0.018 0.982 46 H 0.056 0.944 47 H 0.049 0.951 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -6.429 5.585 18.742 20.587 hybrid contribution -0.366 -1.132 -1.001 1.555 sum -6.795 4.453 17.742 19.514 Atomic orbital electron populations 1.22226 0.94566 1.02868 1.02260 1.22227 0.95589 0.80821 1.06159 1.47775 1.63160 1.14838 1.04890 1.20734 0.77587 0.86808 0.86064 1.90778 1.49106 1.17567 1.87307 1.22328 1.09829 0.90051 0.80416 1.47002 1.10601 1.29226 1.20340 1.23977 0.99597 1.03127 0.91646 1.21601 0.92046 1.00556 1.00412 1.20087 0.94164 1.03022 0.93778 1.23179 0.91369 0.98701 1.04692 1.23059 1.03232 0.92207 1.02754 1.74998 1.18867 1.18698 1.04829 1.78410 1.11004 1.05921 1.12811 1.22017 0.95492 0.96418 0.82942 0.88415 1.23162 0.98253 0.98759 0.97988 1.21124 0.86076 0.90731 0.96428 1.44743 1.07234 1.13803 1.68143 1.19311 0.94973 0.90758 1.31488 0.90534 1.25403 0.96283 1.01397 1.01401 1.70135 1.05212 1.35640 1.47916 0.85177 0.77778 0.80385 0.76928 1.19736 1.21547 1.22760 1.21979 0.93763 0.90420 0.94041 0.93232 0.90626 0.91224 0.88622 0.88046 0.80351 0.83081 0.74802 0.85940 0.87348 0.85773 0.86854 0.90325 0.90009 0.90711 0.93075 0.98197 0.94353 0.95110 0.93757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.69 9.19 71.98 0.66 -3.03 16 2 C 0.07 1.98 4.89 86.38 0.42 2.40 16 3 N -0.58 -16.69 2.53 -790.10 -2.00 -18.69 16 4 C 0.50 14.27 7.63 87.66 0.67 14.94 16 5 O -0.57 -21.60 15.07 -3.04 -0.05 -21.64 16 6 C 0.10 1.80 5.48 85.63 0.47 2.27 16 7 N -0.28 -6.82 3.20 -351.46 -1.12 -7.94 16 8 C -0.03 -0.62 10.89 83.49 0.91 0.29 16 9 C -0.01 -0.19 6.88 41.60 0.29 0.10 16 10 C -0.09 -1.51 6.33 -11.54 -0.07 -1.58 16 11 C -0.14 -1.34 10.03 30.62 0.31 -1.03 16 12 C -0.17 -2.50 10.24 30.62 0.31 -2.19 16 13 N -0.31 -10.18 12.41 -48.60 -0.60 -10.79 16 14 N -0.10 -3.48 12.13 37.02 0.45 -3.03 16 15 C 0.14 4.62 3.66 46.38 0.17 4.79 16 16 H 0.10 3.43 7.02 -2.38 -0.02 3.41 16 17 C -0.14 -4.91 6.00 31.78 0.19 -4.72 16 18 C 0.18 7.87 4.17 86.73 0.36 8.23 16 19 N -0.61 -28.01 1.91 -691.98 -1.32 -29.33 16 20 C -0.24 -12.00 9.91 84.03 0.83 -11.17 16 21 H 0.08 3.83 7.83 -2.91 -0.02 3.80 16 22 C -0.05 -2.62 5.49 84.86 0.47 -2.16 16 23 N -0.94 -50.90 10.31 21.65 0.22 -50.68 16 24 Si 0.97 42.57 29.55 68.60 2.03 44.60 16 25 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 26 H -0.29 -12.53 7.11 99.48 0.71 -11.83 16 27 H -0.30 -13.59 7.11 99.48 0.71 -12.88 16 28 C 0.12 4.84 6.55 86.86 0.57 5.41 16 29 H 0.05 1.36 4.89 -2.39 -0.01 1.35 16 30 H 0.07 1.14 6.80 -2.39 -0.02 1.12 16 31 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.10 1.86 6.67 -2.39 -0.02 1.85 16 33 H 0.10 3.77 4.28 -2.39 -0.01 3.76 16 34 H 0.18 1.61 6.60 -2.39 -0.02 1.60 16 35 H 0.15 2.19 7.58 -2.39 -0.02 2.17 16 36 H 0.24 1.80 7.44 -2.91 -0.02 1.78 16 37 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.11 0.76 7.22 -2.39 -0.02 0.74 16 39 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.11 1.28 8.14 -2.38 -0.02 1.26 16 41 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.08 2.55 6.58 -2.39 -0.02 2.54 16 43 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 44 H 0.05 2.31 4.63 -2.39 -0.01 2.30 16 45 H 0.00 -0.01 7.50 -2.38 -0.02 -0.03 16 46 H 0.25 13.15 8.31 -92.70 -0.77 12.38 16 47 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -74.75 374.26 5.15 -69.60 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: 0.98 Total: 15.36 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: 6.56 Total: 12.54 kcal Atomic # 7 Polarization: -116.09 SS G_CDS: -4.37 Total: -120.46 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.05 Total: -21.64 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -74.75 5.15 -69.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269330096.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.182 kcal (2) G-P(sol) polarization free energy of solvation -74.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds