Wall clock time and date at job start Tue Mar 31 2020 18:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50699 * 120.00397 * 2 1 4 4 N 1.46496 * 109.47557 * 125.22304 * 3 2 1 5 5 C 1.36737 * 127.13670 * 268.57440 * 4 3 2 6 6 C 1.50695 * 126.34690 * 0.03722 * 5 4 3 7 7 C 1.53002 * 109.47191 * 270.24707 * 6 5 4 8 8 C 1.50696 * 109.47463 * 180.02562 * 7 6 5 9 9 H 1.07997 * 119.99900 * 359.97438 * 8 7 6 10 10 C 1.37874 * 120.00092 * 180.02562 * 8 7 6 11 11 N 1.31514 * 120.00357 * 359.97438 * 10 8 7 12 12 Si 1.86807 * 120.00037 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.46994 * 59.99360 * 12 10 8 14 14 H 1.48502 * 109.47211 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.46955 * 299.99648 * 12 10 8 16 16 N 1.30299 * 107.30456 * 180.22585 * 5 4 3 17 17 N 1.28526 * 110.05371 * 359.77264 * 16 5 4 18 18 C 1.31226 * 109.85932 * 0.02562 * 17 16 5 19 19 N 1.38576 * 126.46966 * 179.97438 * 18 17 16 20 20 C 1.46893 * 111.00216 * 297.33139 * 19 18 17 21 21 C 1.53238 * 109.34006 * 187.25620 * 20 19 18 22 22 N 1.47084 * 108.52272 * 306.16962 * 21 20 19 23 23 C 1.34777 * 120.88117 * 231.18894 * 22 21 20 24 24 C 1.50701 * 119.99944 * 180.02562 * 23 22 21 25 25 O 1.21281 * 120.00013 * 359.97438 * 23 22 21 26 26 C 1.47077 * 118.23375 * 51.45843 * 22 21 20 27 27 C 1.46900 * 111.00179 * 61.63507 * 19 18 17 28 28 H 1.07997 * 119.99955 * 0.02562 * 1 2 3 29 29 H 1.08004 * 120.00073 * 180.02562 * 1 2 3 30 30 H 1.08005 * 120.00248 * 179.97438 * 2 1 3 31 31 H 1.09003 * 109.46667 * 5.22302 * 3 2 1 32 32 H 1.08998 * 109.47142 * 245.22860 * 3 2 1 33 33 H 1.08998 * 109.47337 * 30.25278 * 6 5 4 34 34 H 1.09004 * 109.47442 * 150.25274 * 6 5 4 35 35 H 1.08998 * 109.47446 * 300.00504 * 7 6 5 36 36 H 1.09000 * 109.47148 * 60.00180 * 7 6 5 37 37 H 0.96992 * 120.00486 * 180.02562 * 11 10 8 38 38 H 1.09002 * 109.49615 * 67.29740 * 20 19 18 39 39 H 1.08997 * 109.51704 * 307.22580 * 20 19 18 40 40 H 1.09003 * 109.62922 * 186.46130 * 21 20 19 41 41 H 1.08997 * 109.63275 * 65.87946 * 21 20 19 42 42 H 1.08994 * 109.47053 * 179.97438 * 24 23 22 43 43 H 1.08998 * 109.46473 * 299.99821 * 24 23 22 44 44 H 1.09001 * 109.47129 * 59.99995 * 24 23 22 45 45 H 1.08995 * 109.63189 * 68.25364 * 26 22 21 46 46 H 1.08999 * 109.62575 * 188.83089 * 26 22 21 47 47 H 1.09002 * 109.49504 * 292.70442 * 27 19 18 48 48 H 1.09003 * 109.49416 * 52.75544 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9977 1.3297 1.1283 5 6 2.7614 1.8135 2.3852 6 6 1.4771 2.4284 2.8787 7 6 1.5042 3.9372 2.6264 8 6 0.2202 4.5523 3.1205 9 1 -0.5393 3.9293 3.5692 10 6 0.0147 5.9102 2.9988 11 7 0.9394 6.6688 2.4519 12 14 -1.5766 6.6727 3.6119 13 1 -1.7191 6.4172 5.0678 14 1 -1.5504 8.1371 3.3669 15 1 -2.7251 6.0699 2.8888 16 7 3.8537 1.6479 3.0759 17 7 4.7556 1.0924 2.3479 18 6 4.2832 0.8724 1.1435 19 7 4.9631 0.2901 0.0857 20 6 6.1219 1.1031 -0.3066 21 6 6.7371 0.5258 -1.5859 22 7 7.0238 -0.8997 -1.3644 23 6 8.2412 -1.4106 -1.6351 24 6 8.5131 -2.8744 -1.4012 25 8 9.1177 -0.6926 -2.0677 26 6 5.9449 -1.7540 -0.8455 27 6 5.3627 -1.0857 0.4102 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8501 -0.9353 0.0004 31 1 1.3589 2.1314 0.0936 32 1 2.6181 1.4044 -0.9331 33 1 0.6347 1.9861 2.3470 34 1 1.3714 2.2406 3.9472 35 1 2.3466 4.3795 3.1581 36 1 1.6098 4.1251 1.5579 37 1 0.7950 7.6241 2.3667 38 1 6.8635 1.0888 0.4921 39 1 5.8023 2.1293 -0.4878 40 1 7.6622 1.0536 -1.8178 41 1 6.0337 0.6338 -2.4115 42 1 9.5433 -3.1009 -1.6757 43 1 8.3571 -3.1091 -0.3483 44 1 7.8353 -3.4717 -2.0110 45 1 5.1668 -1.8609 -1.6012 46 1 6.3459 -2.7342 -0.5877 47 1 6.1148 -1.0696 1.1990 48 1 4.4920 -1.6470 0.7493 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338927401.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:53 Heat of formation + Delta-G solvation = 73.720291 kcal Electronic energy + Delta-G solvation = -29058.620908 eV Core-core repulsion = 25150.801250 eV Total energy + Delta-G solvation = -3907.819658 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.69994 -40.43808 -38.26574 -36.10856 -35.09802 -34.00319 -32.62614 -32.07136 -31.68246 -30.15077 -28.84481 -27.16193 -26.43940 -25.19655 -24.10451 -22.52670 -21.89032 -21.11444 -20.29968 -19.81886 -19.14513 -17.75785 -16.90535 -16.58126 -16.34717 -15.97221 -15.93870 -15.89969 -15.17885 -14.80539 -14.56524 -14.47372 -13.89323 -13.88620 -13.61751 -13.38004 -13.16786 -13.10917 -12.58716 -12.48490 -12.42150 -12.19793 -11.97106 -11.76269 -11.62289 -11.59329 -11.34168 -11.18889 -11.00452 -10.75889 -10.49151 -10.14539 -10.09441 -9.92541 -9.78074 -9.65341 -9.28611 -9.22497 -8.80489 -8.50179 -8.44490 -6.08938 -4.13559 1.83996 2.01509 2.29484 2.48351 2.71535 3.18450 3.28073 3.33643 3.35424 3.63357 4.16599 4.37785 4.40788 4.58213 4.65791 4.72350 4.79405 4.83756 4.85538 4.94378 4.95681 5.05743 5.10834 5.13077 5.19518 5.27038 5.40326 5.44931 5.47218 5.52454 5.54162 5.61336 5.70958 5.79310 6.05332 6.23230 6.26727 6.38573 6.39309 6.44275 6.52526 6.61595 6.85691 7.03205 7.37054 7.49800 7.63848 7.82104 7.87798 8.25120 8.92292 9.08399 9.51336 11.02075 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.020182 B = 0.002553 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.037530 B =10965.164265 C =11470.587948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.176 4.176 3 C 0.140 3.860 4 N -0.458 5.458 5 C 0.223 3.777 6 C -0.033 4.033 7 C 0.033 3.967 8 C -0.525 4.525 9 H 0.059 0.941 10 C 0.060 3.940 11 N -0.892 5.892 12 Si 0.895 3.105 13 H -0.275 1.275 14 H -0.287 1.287 15 H -0.276 1.276 16 N -0.298 5.298 17 N -0.310 5.310 18 C 0.316 3.684 19 N -0.457 5.457 20 C 0.052 3.948 21 C 0.118 3.882 22 N -0.617 5.617 23 C 0.513 3.487 24 C -0.174 4.174 25 O -0.547 6.547 26 C 0.114 3.886 27 C 0.053 3.947 28 H 0.107 0.893 29 H 0.103 0.897 30 H 0.111 0.889 31 H 0.106 0.894 32 H 0.103 0.897 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.025 0.975 36 H 0.013 0.987 37 H 0.263 0.737 38 H 0.059 0.941 39 H 0.091 0.909 40 H 0.101 0.899 41 H 0.078 0.922 42 H 0.092 0.908 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.081 0.919 46 H 0.095 0.905 47 H 0.059 0.941 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.318 -20.807 -10.999 24.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.195 4.195 3 C 0.017 3.983 4 N -0.150 5.150 5 C -0.044 4.044 6 C -0.073 4.073 7 C -0.006 4.006 8 C -0.564 4.564 9 H 0.077 0.923 10 C -0.142 4.142 11 N -0.530 5.530 12 Si 0.722 3.278 13 H -0.201 1.201 14 H -0.213 1.213 15 H -0.202 1.202 16 N -0.138 5.138 17 N -0.154 5.154 18 C -0.041 4.041 19 N -0.183 5.183 20 C -0.076 4.076 21 C -0.004 4.004 22 N -0.351 5.351 23 C 0.303 3.697 24 C -0.234 4.234 25 O -0.424 6.424 26 C -0.009 4.009 27 C -0.076 4.076 28 H 0.125 0.875 29 H 0.121 0.879 30 H 0.129 0.871 31 H 0.124 0.876 32 H 0.121 0.879 33 H 0.089 0.911 34 H 0.108 0.892 35 H 0.044 0.956 36 H 0.032 0.968 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.109 0.891 40 H 0.120 0.880 41 H 0.096 0.904 42 H 0.111 0.889 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.099 0.901 46 H 0.113 0.887 47 H 0.077 0.923 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 7.508 -20.226 -10.538 24.011 hybrid contribution -1.367 0.495 -0.174 1.464 sum 6.141 -19.731 -10.712 23.276 Atomic orbital electron populations 1.24033 0.95620 1.02780 0.97411 1.22997 0.96140 0.97788 1.02584 1.20942 0.91841 0.97512 0.87998 1.46327 1.11120 1.45509 1.12085 1.25665 0.99946 0.98034 0.80716 1.20479 0.86308 0.99127 1.01362 1.19064 0.98141 0.86204 0.97148 1.21082 1.02047 0.92784 1.40445 0.92322 1.25010 0.96766 0.97308 0.95123 1.69953 1.33670 1.05554 1.43853 0.86618 0.83545 0.78117 0.79500 1.20064 1.21269 1.20187 1.74080 0.97652 1.16776 1.25287 1.74497 1.24134 1.16286 1.00484 1.22023 0.85212 1.04259 0.92570 1.58454 1.25432 1.02545 1.31869 1.22560 0.90486 0.97205 0.97332 1.21734 1.01439 0.80661 0.96609 1.48239 1.11572 1.10045 1.65280 1.20834 0.81178 0.90826 0.76896 1.21948 1.04909 0.92443 1.04071 1.90725 1.44312 1.61939 1.45424 1.21997 0.89763 0.93681 0.95467 1.22590 1.00770 0.87283 0.96918 0.87489 0.87903 0.87149 0.87553 0.87883 0.91094 0.89247 0.95633 0.96821 0.92755 0.92306 0.89052 0.88041 0.90416 0.88940 0.89256 0.89327 0.90062 0.88653 0.92267 0.89357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 14.32 29.01 0.42 -1.13 16 2 C -0.18 -1.85 9.85 -36.03 -0.35 -2.20 16 3 C 0.14 1.76 6.34 -5.20 -0.03 1.72 16 4 N -0.46 -7.32 2.79 -115.37 -0.32 -7.64 16 5 C 0.22 4.30 7.32 -154.02 -1.13 3.17 16 6 C -0.03 -0.65 5.34 -27.88 -0.15 -0.80 16 7 C 0.03 0.81 4.95 -27.88 -0.14 0.67 16 8 C -0.53 -14.04 9.11 -34.44 -0.31 -14.36 16 9 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 10 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 11 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 12 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 13 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 14 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 16 N -0.30 -6.30 12.18 32.99 0.40 -5.90 16 17 N -0.31 -5.93 12.19 30.31 0.37 -5.56 16 18 C 0.32 4.95 6.40 -318.88 -2.04 2.91 16 19 N -0.46 -5.34 4.64 -173.94 -0.81 -6.15 16 20 C 0.05 0.60 5.54 -3.70 -0.02 0.58 16 21 C 0.12 1.14 6.60 -3.60 -0.02 1.11 16 22 N -0.62 -5.38 3.00 -172.18 -0.52 -5.90 16 23 C 0.51 5.03 7.82 -10.98 -0.09 4.95 16 24 C -0.17 -0.94 8.68 36.01 0.31 -0.63 16 25 O -0.55 -7.76 16.54 5.56 0.09 -7.66 16 26 C 0.11 0.71 6.53 -3.37 -0.02 0.69 16 27 C 0.05 0.48 5.55 -3.46 -0.02 0.46 16 28 H 0.11 1.07 7.84 -52.49 -0.41 0.66 16 29 H 0.10 0.81 8.06 -52.48 -0.42 0.39 16 30 H 0.11 1.08 8.06 -52.48 -0.42 0.65 16 31 H 0.11 1.45 7.46 -51.93 -0.39 1.06 16 32 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.07 1.26 7.89 -51.93 -0.41 0.85 16 34 H 0.09 1.77 8.14 -51.93 -0.42 1.35 16 35 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.09 1.10 8.09 -51.93 -0.42 0.68 16 40 H 0.10 1.08 7.06 -51.93 -0.37 0.71 16 41 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.09 0.52 8.12 -51.93 -0.42 0.10 16 43 H 0.09 0.35 7.67 -51.93 -0.40 -0.04 16 44 H 0.09 0.29 7.99 -51.93 -0.41 -0.12 16 45 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.10 0.34 6.02 -51.93 -0.31 0.03 16 47 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.09 0.77 8.09 -51.93 -0.42 0.35 16 LS Contribution 398.83 15.07 6.01 6.01 Total: -1.00 -34.76 398.83 -10.49 -45.25 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -7.73 Total: -1.61 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: -3.70 Total: -1.30 kcal Atomic # 7 Polarization: -56.40 SS G_CDS: -0.14 Total: -56.54 kcal Atomic # 8 Polarization: -7.76 SS G_CDS: 0.09 Total: -7.66 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.76 -10.49 -45.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338927401.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.970 kcal (2) G-P(sol) polarization free energy of solvation -34.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds