Wall clock time and date at job start Tue Mar 31 2020 18:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50699 * 120.00397 * 2 1 4 4 N 1.46496 * 109.47557 * 125.22304 * 3 2 1 5 5 C 1.36737 * 127.13670 * 268.57440 * 4 3 2 6 6 C 1.50695 * 126.34690 * 0.03722 * 5 4 3 7 7 C 1.53002 * 109.47191 * 270.24707 * 6 5 4 8 8 C 1.50696 * 109.47463 * 180.02562 * 7 6 5 9 9 H 1.07997 * 119.99900 * 359.97438 * 8 7 6 10 10 C 1.37874 * 120.00092 * 180.02562 * 8 7 6 11 11 N 1.31514 * 120.00357 * 359.97438 * 10 8 7 12 12 Si 1.86807 * 120.00037 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.46994 * 59.99360 * 12 10 8 14 14 H 1.48502 * 109.47211 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.46955 * 299.99648 * 12 10 8 16 16 N 1.30299 * 107.30456 * 180.22585 * 5 4 3 17 17 N 1.28526 * 110.05371 * 359.77264 * 16 5 4 18 18 C 1.31226 * 109.85932 * 0.02562 * 17 16 5 19 19 N 1.38576 * 126.46966 * 179.97438 * 18 17 16 20 20 C 1.46893 * 111.00216 * 297.33139 * 19 18 17 21 21 C 1.53238 * 109.34006 * 187.25620 * 20 19 18 22 22 N 1.47084 * 108.52272 * 306.16962 * 21 20 19 23 23 C 1.34777 * 120.88117 * 231.18894 * 22 21 20 24 24 C 1.50701 * 119.99944 * 180.02562 * 23 22 21 25 25 O 1.21281 * 120.00013 * 359.97438 * 23 22 21 26 26 C 1.47077 * 118.23375 * 51.45843 * 22 21 20 27 27 C 1.46900 * 111.00179 * 61.63507 * 19 18 17 28 28 H 1.07997 * 119.99955 * 0.02562 * 1 2 3 29 29 H 1.08004 * 120.00073 * 180.02562 * 1 2 3 30 30 H 1.08005 * 120.00248 * 179.97438 * 2 1 3 31 31 H 1.09003 * 109.46667 * 5.22302 * 3 2 1 32 32 H 1.08998 * 109.47142 * 245.22860 * 3 2 1 33 33 H 1.08998 * 109.47337 * 30.25278 * 6 5 4 34 34 H 1.09004 * 109.47442 * 150.25274 * 6 5 4 35 35 H 1.08998 * 109.47446 * 300.00504 * 7 6 5 36 36 H 1.09000 * 109.47148 * 60.00180 * 7 6 5 37 37 H 0.96992 * 120.00486 * 180.02562 * 11 10 8 38 38 H 1.09002 * 109.49615 * 67.29740 * 20 19 18 39 39 H 1.08997 * 109.51704 * 307.22580 * 20 19 18 40 40 H 1.09003 * 109.62922 * 186.46130 * 21 20 19 41 41 H 1.08997 * 109.63275 * 65.87946 * 21 20 19 42 42 H 1.08994 * 109.47053 * 179.97438 * 24 23 22 43 43 H 1.08998 * 109.46473 * 299.99821 * 24 23 22 44 44 H 1.09001 * 109.47129 * 59.99995 * 24 23 22 45 45 H 1.08995 * 109.63189 * 68.25364 * 26 22 21 46 46 H 1.08999 * 109.62575 * 188.83089 * 26 22 21 47 47 H 1.09002 * 109.49504 * 292.70442 * 27 19 18 48 48 H 1.09003 * 109.49416 * 52.75544 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9977 1.3297 1.1283 5 6 2.7614 1.8135 2.3852 6 6 1.4771 2.4284 2.8787 7 6 1.5042 3.9372 2.6264 8 6 0.2202 4.5523 3.1205 9 1 -0.5393 3.9293 3.5692 10 6 0.0147 5.9102 2.9988 11 7 0.9394 6.6688 2.4519 12 14 -1.5766 6.6727 3.6119 13 1 -1.7191 6.4172 5.0678 14 1 -1.5504 8.1371 3.3669 15 1 -2.7251 6.0699 2.8888 16 7 3.8537 1.6479 3.0759 17 7 4.7556 1.0924 2.3479 18 6 4.2832 0.8724 1.1435 19 7 4.9631 0.2901 0.0857 20 6 6.1219 1.1031 -0.3066 21 6 6.7371 0.5258 -1.5859 22 7 7.0238 -0.8997 -1.3644 23 6 8.2412 -1.4106 -1.6351 24 6 8.5131 -2.8744 -1.4012 25 8 9.1177 -0.6926 -2.0677 26 6 5.9449 -1.7540 -0.8455 27 6 5.3627 -1.0857 0.4102 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8501 -0.9353 0.0004 31 1 1.3589 2.1314 0.0936 32 1 2.6181 1.4044 -0.9331 33 1 0.6347 1.9861 2.3470 34 1 1.3714 2.2406 3.9472 35 1 2.3466 4.3795 3.1581 36 1 1.6098 4.1251 1.5579 37 1 0.7950 7.6241 2.3667 38 1 6.8635 1.0888 0.4921 39 1 5.8023 2.1293 -0.4878 40 1 7.6622 1.0536 -1.8178 41 1 6.0337 0.6338 -2.4115 42 1 9.5433 -3.1009 -1.6757 43 1 8.3571 -3.1091 -0.3483 44 1 7.8353 -3.4717 -2.0110 45 1 5.1668 -1.8609 -1.6012 46 1 6.3459 -2.7342 -0.5877 47 1 6.1148 -1.0696 1.1990 48 1 4.4920 -1.6470 0.7493 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338927401.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:52 Heat of formation + Delta-G solvation = 53.022630 kcal Electronic energy + Delta-G solvation = -29059.518426 eV Core-core repulsion = 25150.801250 eV Total energy + Delta-G solvation = -3908.717176 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.07464 -41.22748 -39.19486 -37.23977 -36.24000 -35.63019 -33.89443 -33.41308 -32.74357 -30.97072 -30.10955 -28.28437 -27.45515 -26.96427 -24.87519 -23.84044 -23.38727 -22.14253 -21.63435 -20.83724 -19.95545 -18.74863 -18.51551 -17.88596 -17.49222 -17.02420 -16.86211 -16.60339 -16.50870 -16.10715 -15.76801 -15.50209 -15.20666 -14.95715 -14.65795 -14.53305 -14.31293 -14.18080 -13.76125 -13.49547 -13.16458 -13.14261 -13.00838 -12.86804 -12.82172 -12.58618 -12.57307 -12.50949 -12.43788 -12.42248 -12.07709 -11.81502 -11.63983 -11.33162 -11.07997 -10.92878 -10.57593 -10.48502 -10.19762 -10.00865 -9.70010 -8.20559 -6.33073 0.65113 0.90183 1.43426 1.46668 1.52599 1.54117 1.59553 1.71385 1.95429 2.41902 2.59637 3.13884 3.42033 3.51236 3.71035 3.72485 3.81078 3.85046 3.95824 4.01277 4.15172 4.19075 4.24275 4.30971 4.39641 4.49168 4.58493 4.60093 4.60668 4.63419 4.66898 4.76256 4.77243 4.82671 4.96684 4.98650 5.05411 5.11265 5.32229 5.42136 5.46227 5.53803 5.57257 5.60994 5.71698 5.77586 6.12211 6.16740 6.36425 6.82729 7.10466 7.37225 7.65287 8.91305 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.020182 B = 0.002553 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.037530 B =10965.164265 C =11470.587948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.183 4.183 3 C 0.134 3.866 4 N -0.453 5.453 5 C 0.208 3.792 6 C -0.015 4.015 7 C 0.044 3.956 8 C -0.538 4.538 9 H 0.074 0.926 10 C 0.001 3.999 11 N -0.935 5.935 12 Si 0.967 3.033 13 H -0.268 1.268 14 H -0.289 1.289 15 H -0.259 1.259 16 N -0.334 5.334 17 N -0.346 5.346 18 C 0.338 3.662 19 N -0.445 5.445 20 C 0.058 3.942 21 C 0.127 3.873 22 N -0.617 5.617 23 C 0.506 3.494 24 C -0.167 4.167 25 O -0.601 6.601 26 C 0.122 3.878 27 C 0.049 3.951 28 H 0.100 0.900 29 H 0.126 0.874 30 H 0.124 0.876 31 H 0.093 0.907 32 H 0.119 0.881 33 H 0.096 0.904 34 H 0.088 0.912 35 H -0.019 1.019 36 H -0.006 1.006 37 H 0.263 0.737 38 H 0.036 0.964 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.088 0.912 43 H 0.109 0.891 44 H 0.119 0.881 45 H 0.102 0.898 46 H 0.132 0.868 47 H 0.042 0.958 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.340 -23.815 -12.118 27.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.202 4.202 3 C 0.013 3.987 4 N -0.144 5.144 5 C -0.061 4.061 6 C -0.055 4.055 7 C 0.006 3.994 8 C -0.576 4.576 9 H 0.092 0.908 10 C -0.197 4.197 11 N -0.575 5.575 12 Si 0.791 3.209 13 H -0.193 1.193 14 H -0.215 1.215 15 H -0.183 1.183 16 N -0.174 5.174 17 N -0.190 5.190 18 C -0.019 4.019 19 N -0.172 5.172 20 C -0.070 4.070 21 C 0.003 3.997 22 N -0.350 5.350 23 C 0.297 3.703 24 C -0.226 4.226 25 O -0.482 6.482 26 C -0.001 4.001 27 C -0.078 4.078 28 H 0.119 0.881 29 H 0.144 0.856 30 H 0.142 0.858 31 H 0.111 0.889 32 H 0.137 0.863 33 H 0.114 0.886 34 H 0.106 0.894 35 H -0.001 1.001 36 H 0.013 0.987 37 H 0.072 0.928 38 H 0.054 0.946 39 H 0.098 0.902 40 H 0.105 0.895 41 H 0.113 0.887 42 H 0.107 0.893 43 H 0.128 0.872 44 H 0.137 0.863 45 H 0.121 0.879 46 H 0.150 0.850 47 H 0.060 0.940 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 5.492 -23.281 -11.656 26.609 hybrid contribution -0.709 1.411 0.121 1.584 sum 4.783 -21.870 -11.535 25.184 Atomic orbital electron populations 1.24221 0.95354 1.03628 0.95537 1.22901 0.96321 0.96837 1.04159 1.21199 0.91511 0.98674 0.87270 1.46492 1.11677 1.44449 1.11801 1.25364 0.99373 0.99221 0.82153 1.20150 0.87802 0.95749 1.01772 1.18823 0.95986 0.89531 0.95078 1.21547 1.02763 0.93341 1.39953 0.90830 1.25992 1.00429 0.98038 0.95232 1.70111 1.36079 1.05821 1.45480 0.85470 0.79348 0.76861 0.79207 1.19295 1.21462 1.18342 1.73968 0.98592 1.17823 1.27042 1.74420 1.24444 1.18002 1.02087 1.22432 0.85049 1.02014 0.92423 1.58777 1.25180 1.03564 1.29669 1.22480 0.89802 0.97086 0.97669 1.21567 1.00875 0.81564 0.95668 1.48378 1.12172 1.09749 1.64743 1.21701 0.80498 0.92414 0.75678 1.21986 1.05542 0.89169 1.05890 1.90704 1.45919 1.63598 1.47998 1.22220 0.89478 0.94111 0.94242 1.22774 1.00993 0.85721 0.98343 0.88148 0.85552 0.85779 0.88902 0.86336 0.88595 0.89359 1.00059 0.98721 0.92814 0.94553 0.90199 0.89490 0.88731 0.89348 0.87243 0.86263 0.87946 0.84998 0.93975 0.88140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 14.32 67.78 0.97 -1.48 16 2 C -0.18 -3.37 9.85 25.65 0.25 -3.12 16 3 C 0.13 3.24 6.34 85.63 0.54 3.78 16 4 N -0.45 -14.41 2.79 -518.92 -1.45 -15.86 16 5 C 0.21 8.17 7.32 137.64 1.01 9.17 16 6 C -0.02 -0.60 5.34 29.85 0.16 -0.44 16 7 C 0.04 2.27 4.95 29.85 0.15 2.42 16 8 C -0.54 -29.01 9.11 25.60 0.23 -28.78 16 9 H 0.07 3.67 7.74 -2.91 -0.02 3.64 16 10 C 0.00 0.06 5.46 84.65 0.46 0.52 16 11 N -0.93 -56.30 13.29 21.45 0.28 -56.01 16 12 Si 0.97 42.65 29.54 68.60 2.03 44.68 16 13 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 14 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 15 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 16 N -0.33 -14.66 12.18 -49.54 -0.60 -15.26 16 17 N -0.35 -13.62 12.19 -58.01 -0.71 -14.33 16 18 C 0.34 10.60 6.40 260.11 1.66 12.26 16 19 N -0.45 -9.95 4.64 -704.22 -3.27 -13.21 16 20 C 0.06 1.35 5.54 86.38 0.48 1.82 16 21 C 0.13 2.36 6.60 86.35 0.57 2.93 16 22 N -0.62 -9.55 3.00 -817.05 -2.45 -12.00 16 23 C 0.51 9.14 7.82 87.66 0.69 9.83 16 24 C -0.17 -1.27 8.68 71.24 0.62 -0.65 16 25 O -0.60 -17.18 16.54 -3.03 -0.05 -17.23 16 26 C 0.12 1.05 6.53 86.50 0.57 1.62 16 27 C 0.05 0.79 5.55 86.54 0.48 1.27 16 28 H 0.10 1.79 7.84 -2.91 -0.02 1.77 16 29 H 0.13 1.50 8.06 -2.91 -0.02 1.48 16 30 H 0.12 1.98 8.06 -2.91 -0.02 1.96 16 31 H 0.09 2.50 7.46 -2.39 -0.02 2.49 16 32 H 0.12 2.45 8.14 -2.39 -0.02 2.43 16 33 H 0.10 3.32 7.89 -2.39 -0.02 3.30 16 34 H 0.09 3.54 8.14 -2.39 -0.02 3.52 16 35 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 36 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 37 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 38 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.08 2.02 8.09 -2.39 -0.02 2.00 16 40 H 0.09 1.92 7.06 -2.39 -0.02 1.90 16 41 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.09 0.80 8.12 -2.39 -0.02 0.78 16 43 H 0.11 0.43 7.67 -2.39 -0.02 0.41 16 44 H 0.12 0.21 7.99 -2.39 -0.02 0.19 16 45 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 46 H 0.13 0.26 6.02 -2.39 -0.01 0.25 16 47 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 48 H 0.10 1.43 8.09 -2.39 -0.02 1.42 16 Total: -1.00 -80.21 398.83 3.56 -76.65 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: 0.94 Total: 11.42 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: 8.84 Total: 11.15 kcal Atomic # 7 Polarization: -118.48 SS G_CDS: -8.20 Total: -126.68 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -0.05 Total: -17.23 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -80.21 3.56 -76.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338927401.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.671 kcal (2) G-P(sol) polarization free energy of solvation -80.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds