Wall clock time and date at job start Tue Mar 31 2020 17:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47284 * 2 1 4 4 C 1.36741 * 127.13890 * 88.83835 * 3 2 1 5 5 C 1.50697 * 126.34423 * 359.97438 * 4 3 2 6 6 C 1.53006 * 109.47198 * 269.71438 * 5 4 3 7 7 C 1.50697 * 109.47198 * 179.97438 * 6 5 4 8 8 H 1.07997 * 120.00239 * 0.02562 * 7 6 5 9 9 C 1.37875 * 119.99753 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00207 * 0.02562 * 9 7 6 11 11 Si 1.86806 * 120.00077 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.46782 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.47235 * 119.99919 * 11 9 7 14 14 H 1.48505 * 109.47035 * 240.00269 * 11 9 7 15 15 N 1.30288 * 107.30538 * 179.73481 * 4 3 2 16 16 N 1.28529 * 110.05789 * 0.25583 * 15 4 3 17 17 C 1.31219 * 109.85828 * 0.02562 * 16 15 4 18 18 N 1.38582 * 126.47664 * 179.97438 * 17 16 15 19 19 C 1.46654 * 111.00013 * 271.38695 * 18 17 16 20 20 C 1.53856 * 110.01112 * 188.25890 * 19 18 17 21 21 N 1.47612 * 106.14348 * 308.20543 * 20 19 18 22 22 C 1.33538 * 127.62897 * 236.28146 * 21 20 19 23 23 O 1.21280 * 125.37889 * 339.08974 * 22 21 20 24 24 C 1.51511 * 109.24375 * 159.07939 * 22 21 20 25 25 C 1.54542 * 104.23480 * 23.60649 * 24 22 21 26 26 C 1.47592 * 120.77291 * 51.93558 * 21 20 19 27 27 H 1.08993 * 110.33756 * 66.27572 * 26 21 20 28 28 C 1.47164 * 110.99863 * 37.64291 * 18 17 16 29 29 H 1.09000 * 109.46390 * 65.81711 * 1 2 3 30 30 H 1.08997 * 109.47264 * 185.81588 * 1 2 3 31 31 H 1.09000 * 109.46779 * 305.82125 * 1 2 3 32 32 H 1.08996 * 109.47320 * 239.99755 * 2 1 3 33 33 H 1.09006 * 109.46967 * 119.99636 * 2 1 3 34 34 H 1.09003 * 109.47353 * 149.71556 * 5 4 3 35 35 H 1.08997 * 109.47553 * 29.71247 * 5 4 3 36 36 H 1.09003 * 109.46872 * 59.99824 * 6 5 4 37 37 H 1.08996 * 109.47019 * 300.00770 * 6 5 4 38 38 H 0.97007 * 120.00142 * 179.97438 * 10 9 7 39 39 H 1.09005 * 109.37915 * 308.42262 * 19 18 17 40 40 H 1.08997 * 109.38403 * 68.08599 * 19 18 17 41 41 H 1.09001 * 110.11035 * 189.05033 * 20 19 18 42 42 H 1.09002 * 110.11159 * 67.36853 * 20 19 18 43 43 H 1.08993 * 110.47568 * 142.29560 * 24 22 21 44 44 H 1.08999 * 110.48023 * 264.92689 * 24 22 21 45 45 H 1.08991 * 110.69344 * 221.35491 * 25 24 22 46 46 H 1.09007 * 110.68602 * 98.16067 * 25 24 22 47 47 H 1.09004 * 109.67990 * 290.86616 * 28 18 17 48 48 H 1.09005 * 109.68057 * 51.41406 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2728 2.1669 1.0898 5 6 2.1018 1.7729 2.5343 6 6 0.6866 2.1274 2.9956 7 6 0.5155 1.7328 4.4399 8 1 1.3342 1.2754 4.9755 9 6 -0.6864 1.9558 5.0776 10 7 -1.6836 2.5123 4.4254 11 14 -0.8984 1.4674 6.8682 12 1 0.3632 0.8657 7.3698 13 1 -1.2270 2.6707 7.6740 14 1 -1.9997 0.4779 6.9843 15 7 2.6952 3.3175 0.6480 16 7 2.7198 3.3142 -0.6370 17 6 2.3104 2.1517 -1.0877 18 7 2.2011 1.7756 -2.4170 19 6 0.8829 2.1260 -2.9557 20 6 0.7093 1.5193 -4.3589 21 7 1.8960 1.9313 -5.1339 22 6 1.9232 2.5962 -6.2917 23 8 1.0055 2.6689 -7.0814 24 6 3.2813 3.2455 -6.4629 25 6 4.2223 2.3976 -5.5776 26 6 3.2568 1.7025 -4.6101 27 1 3.4663 0.6344 -4.5534 28 6 3.3076 2.3285 -3.2142 29 1 -0.3632 0.4210 -0.9375 30 1 -0.3634 -1.0223 0.1041 31 1 -0.3633 0.6015 0.8333 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.8280 2.3088 3.1455 35 1 2.2600 0.6996 2.6394 36 1 -0.0396 1.5915 2.3844 37 1 0.5284 3.2006 2.8905 38 1 -2.5294 2.6688 4.8740 39 1 0.1074 1.7379 -2.2953 40 1 0.7938 3.2106 -3.0170 41 1 -0.1963 1.9071 -4.8255 42 1 0.6628 0.4322 -4.2940 43 1 3.5962 3.2016 -7.5054 44 1 3.2571 4.2779 -6.1140 45 1 4.9188 3.0360 -5.0342 46 1 4.7594 1.6640 -6.1789 47 1 3.1986 3.4103 -3.2927 48 1 4.2585 2.0885 -2.7386 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339516355.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:39 Heat of formation + Delta-G solvation = 55.065945 kcal Electronic energy + Delta-G solvation = -29475.344105 eV Core-core repulsion = 25566.715534 eV Total energy + Delta-G solvation = -3908.628571 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.71777 -41.11074 -38.19161 -36.14161 -35.57330 -34.04536 -33.49226 -31.78597 -30.40986 -30.02123 -29.28318 -27.64815 -25.33205 -24.79139 -23.84189 -23.32947 -21.98818 -21.46869 -20.81991 -19.78499 -19.41421 -17.38527 -16.89615 -16.49702 -16.36952 -16.19288 -15.94810 -15.65857 -15.25329 -14.61942 -14.52513 -14.24398 -14.21705 -13.77723 -13.49800 -13.33068 -13.17418 -12.96781 -12.85910 -12.55827 -12.37261 -12.11213 -11.89991 -11.81546 -11.67934 -11.39442 -11.32843 -11.24787 -11.10846 -11.02316 -10.69854 -10.36149 -10.08568 -10.04174 -9.93180 -9.82652 -9.29877 -9.24613 -8.92890 -8.45531 -8.30595 -6.10441 -4.14402 1.98789 2.23620 2.35367 2.65917 3.17433 3.25233 3.33662 3.36781 3.51258 3.96497 4.13134 4.28958 4.37004 4.45212 4.61860 4.67945 4.75505 4.82385 4.87939 4.95743 5.04314 5.07244 5.12599 5.22749 5.25839 5.27660 5.30189 5.40321 5.44010 5.47127 5.52435 5.58856 5.69952 5.73775 5.78510 6.10701 6.16552 6.28367 6.32349 6.40210 6.48038 6.61453 6.81927 6.88646 7.36428 7.52589 7.63423 7.85697 7.87067 8.24388 8.91788 9.09325 9.50525 11.00570 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.025721 B = 0.002523 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.328013 B =11096.715966 C =11478.567510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.111 3.889 3 N -0.465 5.465 4 C 0.219 3.781 5 C -0.033 4.033 6 C 0.031 3.969 7 C -0.524 4.524 8 H 0.059 0.941 9 C 0.060 3.940 10 N -0.892 5.892 11 Si 0.893 3.107 12 H -0.272 1.272 13 H -0.283 1.283 14 H -0.284 1.284 15 N -0.298 5.298 16 N -0.314 5.314 17 C 0.321 3.679 18 N -0.462 5.462 19 C 0.047 3.953 20 C 0.137 3.863 21 N -0.624 5.624 22 C 0.524 3.476 23 O -0.532 6.532 24 C -0.156 4.156 25 C -0.124 4.124 26 C 0.134 3.866 27 H 0.095 0.905 28 C 0.066 3.934 29 H 0.055 0.945 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.070 0.930 36 H 0.018 0.982 37 H 0.024 0.976 38 H 0.261 0.739 39 H 0.092 0.908 40 H 0.054 0.946 41 H 0.098 0.902 42 H 0.083 0.917 43 H 0.101 0.899 44 H 0.106 0.894 45 H 0.094 0.906 46 H 0.089 0.911 47 H 0.063 0.937 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.407 -6.248 -19.672 23.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.012 4.012 3 N -0.158 5.158 4 C -0.048 4.048 5 C -0.072 4.072 6 C -0.007 4.007 7 C -0.562 4.562 8 H 0.077 0.923 9 C -0.142 4.142 10 N -0.530 5.530 11 Si 0.721 3.279 12 H -0.196 1.196 13 H -0.209 1.209 14 H -0.210 1.210 15 N -0.137 5.137 16 N -0.159 5.159 17 C -0.035 4.035 18 N -0.187 5.187 19 C -0.081 4.081 20 C 0.016 3.984 21 N -0.359 5.359 22 C 0.312 3.688 23 O -0.408 6.408 24 C -0.196 4.196 25 C -0.163 4.163 26 C 0.029 3.971 27 H 0.113 0.887 28 C -0.062 4.062 29 H 0.074 0.926 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.107 0.893 35 H 0.088 0.912 36 H 0.036 0.964 37 H 0.043 0.957 38 H 0.071 0.929 39 H 0.110 0.890 40 H 0.072 0.928 41 H 0.116 0.884 42 H 0.101 0.899 43 H 0.120 0.880 44 H 0.124 0.876 45 H 0.113 0.887 46 H 0.107 0.893 47 H 0.081 0.919 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 10.190 -5.289 -20.109 23.156 hybrid contribution -0.885 -0.809 1.129 1.647 sum 9.305 -6.099 -18.980 22.001 Atomic orbital electron populations 1.22281 0.93659 1.03743 1.03589 1.21807 0.96092 0.78833 1.04472 1.46406 1.49917 1.13719 1.05780 1.25624 0.98724 0.87929 0.92554 1.20471 1.03442 1.00734 0.82594 1.19125 0.87636 0.97789 0.96140 1.21165 0.98253 1.40715 0.96046 0.92251 1.25003 0.95969 0.95030 0.98212 1.69975 1.03401 1.42998 1.36670 0.86515 0.78135 0.78277 0.84955 1.19619 1.20916 1.21019 1.74048 1.19865 1.17839 1.01952 1.74495 1.21016 1.15822 1.04525 1.22019 1.05736 0.88480 0.87278 1.57855 1.04215 1.60117 0.96497 1.22705 0.89344 1.00144 0.95914 1.21920 0.87565 1.00341 0.88617 1.48639 1.07264 1.58344 1.21652 1.20696 0.89937 0.77620 0.80541 1.90734 1.42790 1.61793 1.45493 1.22421 0.93395 1.01040 1.02751 1.22283 0.97156 0.99685 0.97129 1.21883 0.81901 1.00962 0.92325 0.88695 1.22519 0.93352 0.98592 0.91695 0.92567 0.90440 0.89964 0.88764 0.88590 0.89269 0.91170 0.96389 0.95734 0.92900 0.88972 0.92762 0.88393 0.89894 0.88036 0.87573 0.88717 0.89281 0.91853 0.88945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.15 10.24 37.16 0.38 -1.77 16 2 C 0.11 1.32 6.73 -4.04 -0.03 1.30 16 3 N -0.46 -7.26 2.81 -114.08 -0.32 -7.58 16 4 C 0.22 4.14 7.32 -154.02 -1.13 3.01 16 5 C -0.03 -0.63 5.53 -27.88 -0.15 -0.79 16 6 C 0.03 0.76 4.96 -27.88 -0.14 0.62 16 7 C -0.52 -13.88 9.11 -34.44 -0.31 -14.19 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 10 N -0.89 -25.85 13.29 55.43 0.74 -25.12 16 11 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 12 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 13 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 14 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 15 N -0.30 -6.19 12.18 32.99 0.40 -5.79 16 16 N -0.31 -5.88 11.78 30.32 0.36 -5.53 16 17 C 0.32 4.95 6.66 -318.86 -2.12 2.83 16 18 N -0.46 -5.30 4.53 -173.92 -0.79 -6.09 16 19 C 0.05 0.51 5.57 -3.51 -0.02 0.49 16 20 C 0.14 1.23 7.14 -2.99 -0.02 1.21 16 21 N -0.62 -5.78 2.97 -163.65 -0.49 -6.26 16 22 C 0.52 5.59 8.03 -11.14 -0.09 5.50 16 23 O -0.53 -7.86 17.87 5.56 0.10 -7.76 16 24 C -0.16 -1.03 6.92 -26.67 -0.18 -1.22 16 25 C -0.12 -0.61 6.71 -25.75 -0.17 -0.78 16 26 C 0.13 0.95 3.74 -67.12 -0.25 0.70 16 27 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 28 C 0.07 0.63 4.56 -3.65 -0.02 0.62 16 29 H 0.06 0.64 6.44 -51.93 -0.33 0.31 16 30 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.08 1.34 6.14 -51.93 -0.32 1.03 16 32 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.10 1.09 7.28 -51.93 -0.38 0.71 16 34 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16 35 H 0.07 1.21 7.28 -51.93 -0.38 0.83 16 36 H 0.02 0.45 6.14 -51.93 -0.32 0.13 16 37 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 39 H 0.09 1.02 6.37 -51.93 -0.33 0.69 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.10 0.90 8.03 -51.93 -0.42 0.49 16 42 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.09 0.37 7.82 -51.93 -0.41 -0.04 16 46 H 0.09 0.31 8.14 -51.92 -0.42 -0.12 16 47 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.09 0.87 8.08 -51.93 -0.42 0.45 16 LS Contribution 384.12 15.07 5.79 5.79 Total: -1.00 -34.40 384.12 -11.08 -45.48 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -7.49 Total: -1.95 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: -4.36 Total: -0.95 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: -0.10 Total: -56.37 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: 0.10 Total: -7.76 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.40 -11.08 -45.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339516355.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.551 kcal (2) G-P(sol) polarization free energy of solvation -34.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds