Wall clock time and date at job start Tue Mar 31 2020 17:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47284 * 2 1 4 4 C 1.36741 * 127.13890 * 88.83835 * 3 2 1 5 5 C 1.50697 * 126.34423 * 359.97438 * 4 3 2 6 6 C 1.53006 * 109.47198 * 269.71438 * 5 4 3 7 7 C 1.50697 * 109.47198 * 179.97438 * 6 5 4 8 8 H 1.07997 * 120.00239 * 0.02562 * 7 6 5 9 9 C 1.37875 * 119.99753 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00207 * 0.02562 * 9 7 6 11 11 Si 1.86806 * 120.00077 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.46782 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.47235 * 119.99919 * 11 9 7 14 14 H 1.48505 * 109.47035 * 240.00269 * 11 9 7 15 15 N 1.30288 * 107.30538 * 179.73481 * 4 3 2 16 16 N 1.28529 * 110.05789 * 0.25583 * 15 4 3 17 17 C 1.31219 * 109.85828 * 0.02562 * 16 15 4 18 18 N 1.38582 * 126.47664 * 179.97438 * 17 16 15 19 19 C 1.46654 * 111.00013 * 271.38695 * 18 17 16 20 20 C 1.53856 * 110.01112 * 188.25890 * 19 18 17 21 21 N 1.47612 * 106.14348 * 308.20543 * 20 19 18 22 22 C 1.33538 * 127.62897 * 236.28146 * 21 20 19 23 23 O 1.21280 * 125.37889 * 339.08974 * 22 21 20 24 24 C 1.51511 * 109.24375 * 159.07939 * 22 21 20 25 25 C 1.54542 * 104.23480 * 23.60649 * 24 22 21 26 26 C 1.47592 * 120.77291 * 51.93558 * 21 20 19 27 27 H 1.08993 * 110.33756 * 66.27572 * 26 21 20 28 28 C 1.47164 * 110.99863 * 37.64291 * 18 17 16 29 29 H 1.09000 * 109.46390 * 65.81711 * 1 2 3 30 30 H 1.08997 * 109.47264 * 185.81588 * 1 2 3 31 31 H 1.09000 * 109.46779 * 305.82125 * 1 2 3 32 32 H 1.08996 * 109.47320 * 239.99755 * 2 1 3 33 33 H 1.09006 * 109.46967 * 119.99636 * 2 1 3 34 34 H 1.09003 * 109.47353 * 149.71556 * 5 4 3 35 35 H 1.08997 * 109.47553 * 29.71247 * 5 4 3 36 36 H 1.09003 * 109.46872 * 59.99824 * 6 5 4 37 37 H 1.08996 * 109.47019 * 300.00770 * 6 5 4 38 38 H 0.97007 * 120.00142 * 179.97438 * 10 9 7 39 39 H 1.09005 * 109.37915 * 308.42262 * 19 18 17 40 40 H 1.08997 * 109.38403 * 68.08599 * 19 18 17 41 41 H 1.09001 * 110.11035 * 189.05033 * 20 19 18 42 42 H 1.09002 * 110.11159 * 67.36853 * 20 19 18 43 43 H 1.08993 * 110.47568 * 142.29560 * 24 22 21 44 44 H 1.08999 * 110.48023 * 264.92689 * 24 22 21 45 45 H 1.08991 * 110.69344 * 221.35491 * 25 24 22 46 46 H 1.09007 * 110.68602 * 98.16067 * 25 24 22 47 47 H 1.09004 * 109.67990 * 290.86616 * 28 18 17 48 48 H 1.09005 * 109.68057 * 51.41406 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2728 2.1669 1.0898 5 6 2.1018 1.7729 2.5343 6 6 0.6866 2.1274 2.9956 7 6 0.5155 1.7328 4.4399 8 1 1.3342 1.2754 4.9755 9 6 -0.6864 1.9558 5.0776 10 7 -1.6836 2.5123 4.4254 11 14 -0.8984 1.4674 6.8682 12 1 0.3632 0.8657 7.3698 13 1 -1.2270 2.6707 7.6740 14 1 -1.9997 0.4779 6.9843 15 7 2.6952 3.3175 0.6480 16 7 2.7198 3.3142 -0.6370 17 6 2.3104 2.1517 -1.0877 18 7 2.2011 1.7756 -2.4170 19 6 0.8829 2.1260 -2.9557 20 6 0.7093 1.5193 -4.3589 21 7 1.8960 1.9313 -5.1339 22 6 1.9232 2.5962 -6.2917 23 8 1.0055 2.6689 -7.0814 24 6 3.2813 3.2455 -6.4629 25 6 4.2223 2.3976 -5.5776 26 6 3.2568 1.7025 -4.6101 27 1 3.4663 0.6344 -4.5534 28 6 3.3076 2.3285 -3.2142 29 1 -0.3632 0.4210 -0.9375 30 1 -0.3634 -1.0223 0.1041 31 1 -0.3633 0.6015 0.8333 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.8280 2.3088 3.1455 35 1 2.2600 0.6996 2.6394 36 1 -0.0396 1.5915 2.3844 37 1 0.5284 3.2006 2.8905 38 1 -2.5294 2.6688 4.8740 39 1 0.1074 1.7379 -2.2953 40 1 0.7938 3.2106 -3.0170 41 1 -0.1963 1.9071 -4.8255 42 1 0.6628 0.4322 -4.2940 43 1 3.5962 3.2016 -7.5054 44 1 3.2571 4.2779 -6.1140 45 1 4.9188 3.0360 -5.0342 46 1 4.7594 1.6640 -6.1789 47 1 3.1986 3.4103 -3.2927 48 1 4.2585 2.0885 -2.7386 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339516355.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:38 Heat of formation + Delta-G solvation = 34.637919 kcal Electronic energy + Delta-G solvation = -29476.229931 eV Core-core repulsion = 25566.715534 eV Total energy + Delta-G solvation = -3909.514397 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.05439 -41.87343 -39.14408 -37.03639 -36.85969 -35.75950 -34.36073 -33.54011 -31.54346 -30.84201 -30.50635 -28.78408 -27.10659 -25.56514 -24.94741 -24.20003 -23.74449 -22.22122 -21.92776 -21.17989 -20.22871 -18.72499 -18.25438 -17.76228 -17.28389 -17.14285 -16.93682 -16.58034 -16.51751 -16.20319 -15.66813 -15.26323 -15.11532 -15.03495 -14.72941 -14.35689 -14.22452 -14.08005 -14.04620 -13.64923 -13.36844 -13.16883 -13.08338 -12.92318 -12.73352 -12.68355 -12.58683 -12.41619 -12.38860 -12.20037 -11.84354 -11.82457 -11.74101 -11.58903 -11.26093 -11.11916 -10.90511 -10.56502 -10.44254 -9.87914 -9.57543 -8.20034 -6.31464 0.68424 1.19866 1.42343 1.44315 1.44705 1.56430 1.73824 1.91972 2.41995 2.51390 3.14782 3.33576 3.42546 3.52802 3.64437 3.71195 3.75225 3.93284 3.97623 4.03920 4.07264 4.09846 4.20596 4.27823 4.35436 4.36553 4.47174 4.53620 4.60179 4.65954 4.71271 4.73161 4.82473 4.85777 4.92276 4.95432 5.09321 5.13777 5.16134 5.18378 5.38005 5.46344 5.50669 5.57072 5.64461 5.81127 6.09371 6.15964 6.19448 6.84903 7.06321 7.38452 7.69469 8.91987 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.025721 B = 0.002523 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.328013 B =11096.715966 C =11478.567510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.105 3.895 3 N -0.460 5.460 4 C 0.204 3.796 5 C -0.017 4.017 6 C 0.042 3.958 7 C -0.536 4.536 8 H 0.072 0.928 9 C 0.002 3.998 10 N -0.934 5.934 11 Si 0.965 3.035 12 H -0.256 1.256 13 H -0.285 1.285 14 H -0.278 1.278 15 N -0.335 5.335 16 N -0.348 5.348 17 C 0.342 3.658 18 N -0.449 5.449 19 C 0.053 3.947 20 C 0.143 3.857 21 N -0.626 5.626 22 C 0.514 3.486 23 O -0.582 6.582 24 C -0.151 4.151 25 C -0.113 4.113 26 C 0.140 3.860 27 H 0.115 0.885 28 C 0.065 3.935 29 H 0.062 0.938 30 H 0.104 0.896 31 H 0.035 0.965 32 H 0.128 0.872 33 H 0.107 0.893 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.005 0.995 37 H -0.022 1.022 38 H 0.262 0.738 39 H 0.089 0.911 40 H 0.031 0.969 41 H 0.092 0.908 42 H 0.105 0.895 43 H 0.115 0.885 44 H 0.110 0.890 45 H 0.109 0.891 46 H 0.114 0.886 47 H 0.047 0.953 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.238 -8.793 -20.332 25.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.016 4.016 3 N -0.153 5.153 4 C -0.064 4.064 5 C -0.056 4.056 6 C 0.004 3.996 7 C -0.574 4.574 8 H 0.090 0.910 9 C -0.196 4.196 10 N -0.574 5.574 11 Si 0.789 3.211 12 H -0.179 1.179 13 H -0.211 1.211 14 H -0.204 1.204 15 N -0.174 5.174 16 N -0.192 5.192 17 C -0.016 4.016 18 N -0.174 5.174 19 C -0.075 4.075 20 C 0.021 3.979 21 N -0.360 5.360 22 C 0.303 3.697 23 O -0.462 6.462 24 C -0.190 4.190 25 C -0.151 4.151 26 C 0.037 3.963 27 H 0.132 0.868 28 C -0.063 4.063 29 H 0.081 0.919 30 H 0.123 0.877 31 H 0.054 0.946 32 H 0.146 0.854 33 H 0.125 0.875 34 H 0.105 0.895 35 H 0.116 0.884 36 H 0.023 0.977 37 H -0.004 1.004 38 H 0.071 0.929 39 H 0.108 0.892 40 H 0.049 0.951 41 H 0.111 0.889 42 H 0.123 0.877 43 H 0.134 0.866 44 H 0.128 0.872 45 H 0.127 0.873 46 H 0.133 0.867 47 H 0.066 0.934 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 12.061 -7.859 -20.757 25.260 hybrid contribution -1.484 -0.010 1.252 1.942 sum 10.577 -7.869 -19.505 23.542 Atomic orbital electron populations 1.22219 0.94012 1.04504 1.01889 1.22173 0.95681 0.77042 1.06666 1.46570 1.49141 1.14743 1.04818 1.25322 0.99846 0.88311 0.92969 1.20163 0.99986 1.02296 0.83204 1.18894 0.90559 0.94529 0.95650 1.21619 0.98552 1.40134 0.97046 0.91003 1.25948 0.95730 0.94997 1.02923 1.70122 1.04029 1.44529 1.38728 0.85402 0.78695 0.77812 0.79159 1.17948 1.21146 1.20395 1.73941 1.21105 1.19156 1.03239 1.74411 1.23217 1.17726 1.03823 1.22417 1.02972 0.87477 0.88711 1.58147 1.05133 1.59432 0.94706 1.22661 0.88887 0.98890 0.97087 1.21888 0.87652 1.01351 0.87018 1.48820 1.08207 1.57669 1.21298 1.21415 0.90830 0.77175 0.80239 1.90702 1.44828 1.63503 1.47210 1.22459 0.91277 1.01116 1.04193 1.22353 0.96409 0.99954 0.96390 1.22063 0.81261 1.02097 0.90917 0.86754 1.22659 0.92773 0.97920 0.92903 0.91923 0.87727 0.94566 0.85414 0.87518 0.89493 0.88416 0.97696 1.00351 0.92898 0.89248 0.95053 0.88930 0.87714 0.86629 0.87172 0.87265 0.86747 0.93429 0.88269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.96 10.24 71.98 0.74 -3.22 16 2 C 0.11 2.29 6.73 86.38 0.58 2.87 16 3 N -0.46 -14.03 2.81 -514.85 -1.45 -15.47 16 4 C 0.20 7.83 7.32 137.64 1.01 8.84 16 5 C -0.02 -0.66 5.53 29.85 0.17 -0.50 16 6 C 0.04 2.12 4.96 29.85 0.15 2.27 16 7 C -0.54 -28.65 9.11 25.60 0.23 -28.42 16 8 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 9 C 0.00 0.11 5.46 84.65 0.46 0.57 16 10 N -0.93 -55.69 13.29 21.45 0.28 -55.41 16 11 Si 0.96 42.59 29.54 68.60 2.03 44.61 16 12 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 13 H -0.29 -12.62 7.11 99.48 0.71 -11.92 16 14 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 15 N -0.33 -14.36 12.18 -49.54 -0.60 -14.96 16 16 N -0.35 -13.26 11.78 -58.00 -0.68 -13.94 16 17 C 0.34 10.33 6.66 260.11 1.73 12.06 16 18 N -0.45 -9.61 4.53 -704.15 -3.19 -12.80 16 19 C 0.05 1.11 5.57 86.64 0.48 1.59 16 20 C 0.14 2.37 7.14 86.46 0.62 2.99 16 21 N -0.63 -10.50 2.97 -790.74 -2.34 -12.84 16 22 C 0.51 10.39 8.03 88.11 0.71 11.10 16 23 O -0.58 -17.27 17.87 -3.03 -0.05 -17.33 16 24 C -0.15 -1.66 6.92 30.63 0.21 -1.45 16 25 C -0.11 -0.70 6.71 31.23 0.21 -0.49 16 26 C 0.14 1.57 3.74 44.92 0.17 1.74 16 27 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 28 C 0.06 1.11 4.56 86.28 0.39 1.50 16 29 H 0.06 1.36 6.44 -2.39 -0.02 1.34 16 30 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.04 1.20 6.14 -2.39 -0.01 1.19 16 32 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.11 2.13 7.28 -2.38 -0.02 2.11 16 34 H 0.09 3.43 8.14 -2.39 -0.02 3.41 16 35 H 0.10 3.25 7.28 -2.39 -0.02 3.23 16 36 H 0.00 0.25 6.14 -2.39 -0.01 0.24 16 37 H -0.02 -1.30 8.14 -2.39 -0.02 -1.32 16 38 H 0.26 14.75 8.31 -92.70 -0.77 13.98 16 39 H 0.09 1.93 6.37 -2.38 -0.02 1.92 16 40 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.09 1.68 8.03 -2.39 -0.02 1.66 16 42 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.12 0.98 8.14 -2.39 -0.02 0.97 16 44 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.11 0.44 7.82 -2.39 -0.02 0.42 16 46 H 0.11 0.23 8.14 -2.38 -0.02 0.21 16 47 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 48 H 0.10 1.61 8.08 -2.38 -0.02 1.59 16 Total: -1.00 -79.01 384.12 2.81 -76.20 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: 0.96 Total: 10.47 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: 7.86 Total: 11.45 kcal Atomic # 7 Polarization: -117.43 SS G_CDS: -7.98 Total: -125.41 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -0.05 Total: -17.33 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.61 kcal Total: -79.01 2.81 -76.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339516355.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.841 kcal (2) G-P(sol) polarization free energy of solvation -79.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds