Wall clock time and date at job start Tue Mar 31 2020 18:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46504 * 120.00361 * 2 1 4 4 C 1.52997 * 109.46688 * 84.35640 * 3 2 1 5 5 H 1.09000 * 112.74368 * 316.20448 * 4 3 2 6 6 C 1.53496 * 113.46788 * 87.02751 * 4 3 2 7 7 C 1.53245 * 83.43131 * 140.67250 * 6 4 3 8 8 N 1.47063 * 88.08015 * 334.10385 * 7 6 4 9 9 C 1.36939 * 136.05248 * 207.20021 * 8 7 6 10 10 H 1.08006 * 119.99690 * 171.82284 * 9 8 7 11 11 C 1.38803 * 120.00305 * 352.09511 * 9 8 7 12 12 N 1.31619 * 120.00163 * 359.72759 * 11 9 8 13 13 Si 1.86803 * 120.00273 * 179.72370 * 11 9 8 14 14 H 1.48494 * 109.46928 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.47163 * 120.00199 * 13 11 9 16 16 H 1.48505 * 109.47038 * 240.00182 * 13 11 9 17 17 C 1.34785 * 119.99907 * 179.97438 * 2 1 3 18 18 O 1.21277 * 120.00257 * 180.02562 * 17 2 1 19 19 C 1.50704 * 119.99476 * 0.02562 * 17 2 1 20 20 C 1.50703 * 109.46579 * 179.97438 * 19 17 2 21 21 N 1.30831 * 125.95848 * 90.02404 * 20 19 17 22 22 C 1.33244 * 109.82973 * 179.97438 * 21 20 19 23 23 C 1.50697 * 125.52965 * 180.02562 * 22 21 20 24 24 C 1.53002 * 117.49875 * 188.62717 * 23 22 21 25 25 C 1.52998 * 117.49826 * 120.00163 * 23 22 21 26 26 N 1.30720 * 108.94362 * 0.02562 * 22 21 20 27 27 N 1.34427 * 125.96441 * 269.71150 * 20 19 17 28 28 C 1.46502 * 126.82226 * 0.02562 * 27 20 19 29 29 H 1.08999 * 109.47158 * 90.15713 * 1 2 3 30 30 H 1.09000 * 109.47359 * 210.15992 * 1 2 3 31 31 H 1.09007 * 109.46902 * 330.16009 * 1 2 3 32 32 H 1.08995 * 109.46771 * 324.35945 * 3 2 1 33 33 H 1.08997 * 109.47116 * 204.35299 * 3 2 1 34 34 H 1.09001 * 114.20767 * 254.42871 * 6 4 3 35 35 H 1.08998 * 114.21110 * 27.06237 * 6 4 3 36 36 H 1.08995 * 113.38460 * 219.28745 * 7 6 4 37 37 H 1.09004 * 113.46766 * 88.92959 * 7 6 4 38 38 H 0.97001 * 120.00335 * 179.97438 * 12 11 9 39 39 H 1.08994 * 109.47181 * 299.99351 * 19 17 2 40 40 H 1.09004 * 109.47226 * 60.00094 * 19 17 2 41 41 H 1.08996 * 115.55092 * 334.33817 * 23 22 21 42 42 H 1.08999 * 117.50138 * 359.97438 * 24 23 22 43 43 H 1.08995 * 117.49714 * 145.02668 * 24 23 22 44 44 H 1.08993 * 117.50325 * 214.97895 * 25 23 22 45 45 H 1.09004 * 117.49797 * 0.02562 * 25 23 22 46 46 H 1.09001 * 109.47381 * 89.99074 * 28 27 20 47 47 H 1.08999 * 109.47438 * 209.99649 * 28 27 20 48 48 H 1.09008 * 109.46691 * 329.99652 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3297 1.7812 1.4355 5 1 1.4038 1.6880 2.0031 6 6 3.5578 1.2278 2.1715 7 6 3.6441 2.6514 2.7323 8 7 2.9409 3.1157 1.5270 9 6 2.8848 4.2776 0.8044 10 1 2.3655 4.3001 -0.1424 11 6 3.4999 5.4249 1.2859 12 7 4.1327 5.3975 2.4397 13 14 3.4299 7.0078 0.2965 14 1 2.6640 6.7761 -0.9544 15 1 2.7602 8.0634 1.0981 16 1 4.8094 7.4424 -0.0403 17 6 2.1389 -1.1673 0.0005 18 8 3.3517 -1.1674 0.0010 19 6 1.3852 -2.4723 0.0005 20 6 2.3645 -3.6178 0.0005 21 7 2.8634 -4.2020 1.0595 22 6 3.6949 -5.1752 0.6894 23 6 4.4621 -6.0743 1.6242 24 6 5.5176 -6.9962 1.0102 25 6 4.2017 -7.5790 1.5295 26 7 3.7371 -5.2235 -0.6162 27 7 2.8734 -4.2214 -1.0875 28 6 2.5867 -3.8961 -2.4869 29 1 -0.3633 -0.0028 -1.0276 30 1 -0.3634 -0.8885 0.5163 31 1 -0.3633 0.8915 0.5114 32 1 1.6560 2.0009 -0.5988 33 1 3.1900 1.1152 -0.4238 34 1 3.3269 0.4654 2.9156 35 1 4.3855 0.9546 1.5172 36 1 4.6652 3.0245 2.8100 37 1 3.0724 2.7920 3.6496 38 1 4.5629 6.1992 2.7761 39 1 0.7583 -2.5299 0.8903 40 1 0.7589 -2.5302 -0.8897 41 1 4.6678 -5.6604 2.6113 42 1 5.6568 -6.9526 -0.0700 43 1 6.4181 -7.1887 1.5933 44 1 4.2365 -8.1550 2.4541 45 1 3.4757 -7.9186 0.7907 46 1 3.2968 -3.1478 -2.8388 47 1 2.6762 -4.7963 -3.0949 48 1 1.5736 -3.5021 -2.5681 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001488689708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:00 Heat of formation + Delta-G solvation = 149.801786 kcal Electronic energy + Delta-G solvation = -28732.805551 eV Core-core repulsion = 24828.285034 eV Total energy + Delta-G solvation = -3904.520517 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.30042 -39.85535 -37.94805 -37.39479 -35.31812 -34.05607 -32.81522 -32.15621 -29.69171 -28.15750 -27.85787 -27.38309 -26.19495 -23.90878 -23.37498 -22.65795 -22.47984 -20.88942 -20.07907 -19.16252 -19.00504 -17.33811 -17.20821 -16.67053 -16.16139 -15.88699 -15.70102 -15.46386 -14.94263 -14.67965 -14.25069 -13.87410 -13.76287 -13.57014 -13.49030 -13.33900 -13.12182 -12.75106 -12.40854 -12.29584 -12.17065 -12.01361 -11.84396 -11.67673 -11.45432 -11.09797 -11.06334 -10.86176 -10.75145 -10.74106 -10.36872 -10.04194 -9.97072 -9.85128 -9.75600 -9.68477 -9.42225 -9.26418 -8.77721 -8.34023 -6.83976 -5.75869 -3.08120 1.41952 2.11741 2.59564 2.63406 3.10937 3.38685 3.42906 3.46361 3.64307 3.77036 4.17290 4.26480 4.43388 4.50714 4.58170 4.63943 4.75793 4.84045 4.94631 4.97947 5.11614 5.15934 5.24365 5.32199 5.38874 5.39671 5.48057 5.58260 5.60662 5.63276 5.86802 5.90045 5.93105 6.00688 6.07654 6.19292 6.33421 6.41522 6.51142 6.62863 6.66204 6.81314 6.84464 7.28738 7.42664 7.53245 7.61171 7.99519 8.03721 8.21322 9.04498 9.71753 10.68443 11.42548 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.018919 B = 0.002473 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.662312 B =11319.729155 C =11999.698139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.607 5.607 3 C 0.115 3.885 4 C 0.130 3.870 5 H 0.041 0.959 6 C -0.158 4.158 7 C 0.158 3.842 8 N -0.601 5.601 9 C -0.219 4.219 10 H 0.080 0.920 11 C -0.007 4.007 12 N -0.917 5.917 13 Si 0.910 3.090 14 H -0.279 1.279 15 H -0.290 1.290 16 H -0.290 1.290 17 C 0.516 3.484 18 O -0.519 6.519 19 C -0.065 4.065 20 C 0.305 3.695 21 N -0.525 5.525 22 C 0.256 3.744 23 C -0.069 4.069 24 C -0.161 4.161 25 C -0.160 4.160 26 N -0.316 5.316 27 N -0.374 5.374 28 C 0.096 3.904 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.050 0.950 35 H 0.079 0.921 36 H 0.061 0.939 37 H 0.026 0.974 38 H 0.253 0.747 39 H 0.131 0.869 40 H 0.113 0.887 41 H 0.132 0.868 42 H 0.102 0.898 43 H 0.103 0.897 44 H 0.104 0.896 45 H 0.094 0.906 46 H 0.082 0.918 47 H 0.092 0.908 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.119 -23.640 -6.890 25.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.341 5.341 3 C -0.008 4.008 4 C 0.022 3.978 5 H 0.058 0.942 6 C -0.196 4.196 7 C 0.032 3.968 8 N -0.327 5.327 9 C -0.346 4.346 10 H 0.098 0.902 11 C -0.204 4.204 12 N -0.563 5.563 13 Si 0.741 3.259 14 H -0.205 1.205 15 H -0.217 1.217 16 H -0.217 1.217 17 C 0.300 3.700 18 O -0.394 6.394 19 C -0.107 4.107 20 C 0.027 3.973 21 N -0.251 5.251 22 C -0.025 4.025 23 C -0.090 4.090 24 C -0.199 4.199 25 C -0.198 4.198 26 N -0.145 5.145 27 N -0.164 5.164 28 C -0.047 4.047 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.106 0.894 34 H 0.069 0.931 35 H 0.098 0.902 36 H 0.079 0.921 37 H 0.044 0.956 38 H 0.063 0.937 39 H 0.149 0.851 40 H 0.131 0.869 41 H 0.149 0.851 42 H 0.121 0.879 43 H 0.122 0.878 44 H 0.122 0.878 45 H 0.113 0.887 46 H 0.101 0.899 47 H 0.111 0.889 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.065 -23.631 -7.157 25.682 hybrid contribution -0.468 1.385 -0.574 1.571 sum -7.532 -22.246 -7.731 24.726 Atomic orbital electron populations 1.21862 0.79754 1.03686 1.01698 1.47835 1.06883 1.06339 1.73088 1.21937 0.97466 0.81982 0.99366 1.22428 0.95280 0.87168 0.92904 0.94170 1.23596 0.98600 0.97545 0.99874 1.21885 0.97766 0.87680 0.89423 1.45636 1.50311 1.08204 1.28584 1.18900 1.30500 0.85347 0.99850 0.90249 1.24841 1.00969 0.97600 0.96981 1.69866 1.39038 1.27910 1.19504 0.86080 0.77351 0.83611 0.78907 1.20468 1.21744 1.21706 1.19973 0.88019 0.84496 0.77478 1.90783 1.13458 1.86823 1.48385 1.20245 0.95637 0.88066 1.06794 1.23301 0.96071 0.95202 0.82681 1.70224 1.15020 1.10915 1.28985 1.23019 0.95497 0.94642 0.89368 1.20052 1.01453 0.89448 0.98039 1.23030 0.93056 1.01781 1.02006 1.23019 0.99906 0.93468 1.03440 1.77903 1.13903 1.10639 1.12046 1.50046 1.33073 1.25601 1.07632 1.21952 1.02383 1.03000 0.77321 0.92537 0.91228 0.90255 0.90838 0.89353 0.93109 0.90226 0.92065 0.95634 0.93679 0.85139 0.86938 0.85059 0.87913 0.87848 0.87795 0.88700 0.89904 0.88918 0.89210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.63 10.26 59.85 0.61 1.25 16 2 N -0.61 -8.09 2.87 -181.57 -0.52 -8.61 16 3 C 0.12 2.03 5.42 -4.04 -0.02 2.00 16 4 C 0.13 2.69 4.32 -72.39 -0.31 2.38 16 5 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 6 C -0.16 -3.35 8.00 -26.35 -0.21 -3.56 16 7 C 0.16 3.94 7.22 -8.63 -0.06 3.88 16 8 N -0.60 -15.56 3.64 -177.14 -0.65 -16.21 16 9 C -0.22 -6.07 10.55 -15.06 -0.16 -6.23 16 10 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 11 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 12 N -0.92 -27.76 11.73 55.49 0.65 -27.11 16 13 Si 0.91 22.14 29.55 -169.99 -5.02 17.11 16 14 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 15 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 16 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 17 C 0.52 7.25 7.67 -10.98 -0.08 7.17 16 18 O -0.52 -9.81 15.53 5.56 0.09 -9.72 16 19 C -0.06 -0.64 4.58 -29.03 -0.13 -0.77 16 20 C 0.30 4.06 6.48 -155.70 -1.01 3.05 16 21 N -0.52 -8.16 11.19 -8.16 -0.09 -8.25 16 22 C 0.26 3.72 7.69 -156.85 -1.21 2.52 16 23 C -0.07 -0.78 6.33 -91.77 -0.58 -1.36 16 24 C -0.16 -1.45 10.13 -26.73 -0.27 -1.72 16 25 C -0.16 -1.35 10.23 -26.73 -0.27 -1.62 16 26 N -0.32 -4.54 12.24 32.42 0.40 -4.14 16 27 N -0.37 -4.70 4.04 -65.09 -0.26 -4.96 16 28 C 0.10 0.74 11.33 59.85 0.68 1.42 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.41 6.45 -51.93 -0.33 0.08 16 31 H 0.08 0.75 8.07 -51.93 -0.42 0.33 16 32 H 0.07 1.27 8.11 -51.93 -0.42 0.85 16 33 H 0.09 1.77 6.99 -51.93 -0.36 1.41 16 34 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.08 1.79 7.93 -51.93 -0.41 1.38 16 36 H 0.06 1.68 7.50 -51.93 -0.39 1.29 16 37 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.13 1.06 7.40 -51.93 -0.38 0.68 16 40 H 0.11 0.64 7.08 -51.93 -0.37 0.27 16 41 H 0.13 1.38 8.14 -51.93 -0.42 0.96 16 42 H 0.10 1.03 7.88 -51.93 -0.41 0.62 16 43 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.09 0.41 7.10 -51.92 -0.37 0.04 16 LS Contribution 399.89 15.07 6.03 6.03 Total: -1.00 -37.98 399.89 -10.15 -48.13 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -7.64 Total: -0.37 kcal Atomic # 6 Polarization: 11.23 SS G_CDS: -3.13 Total: 8.10 kcal Atomic # 7 Polarization: -68.81 SS G_CDS: -0.47 Total: -69.28 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.09 Total: -9.72 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -37.98 -10.15 -48.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488689708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.935 kcal (2) G-P(sol) polarization free energy of solvation -37.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds