Wall clock time and date at job start Tue Mar 31 2020 18:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 N 1.40443 * 126.82056 * 2 1 4 4 C 1.30713 * 106.79260 * 180.26114 * 3 2 1 5 5 C 1.50694 * 125.53123 * 179.71722 * 4 3 2 6 6 C 1.52996 * 117.49843 * 8.65352 * 5 4 3 7 7 C 1.52995 * 60.00320 * 252.51483 * 6 5 4 8 8 N 1.33242 * 108.94426 * 359.74761 * 4 3 2 9 9 C 1.30839 * 109.82909 * 0.02562 * 8 4 3 10 10 C 1.50696 * 125.96068 * 180.02562 * 9 8 4 11 11 C 1.50696 * 109.47141 * 90.02523 * 10 9 8 12 12 O 1.21281 * 120.00291 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99870 * 179.97438 * 11 10 9 14 14 C 1.46505 * 120.00047 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47120 * 180.02562 * 14 13 11 16 16 H 1.08993 * 110.78356 * 56.78419 * 15 14 13 17 17 C 1.55165 * 110.71789 * 180.02562 * 15 14 13 18 18 C 1.54915 * 101.57980 * 153.86302 * 17 15 14 19 19 N 1.47425 * 104.83334 * 322.99105 * 18 17 15 20 20 C 1.36938 * 125.64998 * 204.16451 * 19 18 17 21 21 H 1.07995 * 119.99826 * 179.97438 * 20 19 18 22 22 C 1.38807 * 119.99658 * 359.95821 * 20 19 18 23 23 N 1.31617 * 120.00580 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99640 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47223 * 60.00097 * 24 22 20 26 26 H 1.48502 * 109.46983 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47179 * 299.99817 * 24 22 20 28 28 C 1.47022 * 108.70334 * 24.12789 * 19 18 17 29 29 H 1.09005 * 109.46827 * 270.17569 * 1 2 3 30 30 H 1.09004 * 109.47131 * 30.17295 * 1 2 3 31 31 H 1.08996 * 109.46949 * 150.17691 * 1 2 3 32 32 H 1.09003 * 115.55291 * 154.37252 * 5 4 3 33 33 H 1.09004 * 117.50157 * 0.02562 * 6 5 4 34 34 H 1.09000 * 117.49770 * 145.02222 * 6 5 4 35 35 H 1.08997 * 117.49723 * 252.50899 * 7 6 5 36 36 H 1.08997 * 117.49694 * 107.48954 * 7 6 5 37 37 H 1.09001 * 109.47654 * 330.02353 * 10 9 8 38 38 H 1.09004 * 109.46919 * 210.02604 * 10 9 8 39 39 H 0.97001 * 120.00314 * 0.02562 * 13 11 10 40 40 H 1.08993 * 109.47071 * 59.99896 * 14 13 11 41 41 H 1.09004 * 109.47161 * 300.00147 * 14 13 11 42 42 H 1.08995 * 111.00547 * 271.93634 * 17 15 14 43 43 H 1.09001 * 111.00003 * 35.79214 * 17 15 14 44 44 H 1.08997 * 110.36462 * 204.15099 * 18 17 15 45 45 H 1.08999 * 110.46102 * 81.87572 * 18 17 15 46 46 H 0.96996 * 120.00418 * 179.97438 * 23 22 20 47 47 H 1.08997 * 109.88723 * 239.52626 * 28 19 18 48 48 H 1.09000 * 110.01436 * 118.43179 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.3068 1.1243 0.0000 4 6 3.5348 0.6766 -0.0057 5 6 4.7776 1.5289 -0.0140 6 6 4.6025 3.0353 0.1883 7 6 4.9697 2.4864 -1.1918 8 7 3.5096 -0.6556 -0.0037 9 6 2.2707 -1.0761 0.0027 10 6 1.8247 -2.5155 0.0074 11 6 1.6819 -2.9925 1.4297 12 8 1.9194 -2.2381 2.3492 13 7 1.2903 -4.2576 1.6801 14 6 1.1509 -4.7212 3.0629 15 6 0.6983 -6.1827 3.0676 16 1 1.3961 -6.8055 2.5080 17 6 0.5406 -6.7039 4.5205 18 6 -0.5082 -7.8288 4.3353 19 7 -1.4342 -7.3163 3.3090 20 6 -2.7354 -7.7083 3.1409 21 1 -3.3341 -7.2703 2.3560 22 6 -3.2847 -8.6687 3.9791 23 7 -2.5549 -9.2030 4.9352 24 14 -5.0601 -9.2029 3.7502 25 1 -5.2342 -9.7721 2.3898 26 1 -5.4019 -10.2323 4.7645 27 1 -5.9551 -8.0294 3.9141 28 6 -0.7294 -6.3139 2.4965 29 1 -0.3633 0.0032 1.0277 30 1 -0.3633 0.8885 -0.5165 31 1 -0.3633 -0.8915 -0.5111 32 1 5.6691 1.0644 0.4075 33 1 3.5884 3.4099 0.3278 34 1 5.3787 3.5621 0.7432 35 1 5.9875 2.6522 -1.5448 36 1 4.1971 2.4998 -1.9606 37 1 2.5651 -3.1270 -0.5083 38 1 0.8649 -2.6001 -0.5023 39 1 1.1007 -4.8612 0.9448 40 1 0.4106 -4.1095 3.5783 41 1 2.1106 -4.6368 3.5728 42 1 1.4819 -7.1052 4.8959 43 1 0.1618 -5.9208 5.1774 44 1 -1.0397 -8.0095 5.2696 45 1 -0.0280 -8.7443 3.9898 46 1 -2.9388 -9.8738 5.5212 47 1 -1.2442 -5.3554 2.5616 48 1 -0.6845 -6.6405 1.4576 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493264751.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:33 Heat of formation + Delta-G solvation = 103.164881 kcal Electronic energy + Delta-G solvation = -27840.541892 eV Core-core repulsion = 23933.999047 eV Total energy + Delta-G solvation = -3906.542845 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.39319 -39.77861 -37.75748 -37.46559 -34.75568 -34.12955 -32.98623 -32.45323 -30.10927 -29.22213 -28.13530 -27.43495 -25.52526 -24.00288 -23.60924 -22.69493 -21.51490 -20.58664 -20.16888 -19.94157 -19.55733 -17.51804 -17.29800 -16.83142 -16.24156 -15.94710 -15.79787 -15.55532 -15.06369 -14.80953 -14.63237 -13.99537 -13.86442 -13.76462 -13.59276 -13.42061 -13.12636 -12.56539 -12.44491 -12.36075 -11.97174 -11.82505 -11.79068 -11.71605 -11.53267 -11.17733 -11.00654 -10.83219 -10.82998 -10.52267 -10.23573 -10.15253 -10.12262 -10.05122 -9.88147 -9.77553 -9.56748 -9.37119 -9.08530 -8.69235 -6.88548 -5.69808 -3.11901 1.32912 2.03779 2.46181 2.50235 3.12258 3.36654 3.40933 3.42506 3.54719 3.69422 4.08912 4.19791 4.44008 4.53333 4.55728 4.61458 4.67801 4.82588 4.86787 4.99703 5.06233 5.12953 5.20340 5.30520 5.31807 5.34640 5.47549 5.49796 5.64217 5.78220 5.82771 5.84122 6.01079 6.04508 6.09921 6.23932 6.28446 6.33453 6.48329 6.53761 6.54543 6.65309 6.84367 7.38303 7.46997 7.57266 7.81417 7.93575 8.07382 8.32076 9.17320 9.78447 10.43020 11.33984 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.027120 B = 0.001914 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.199113 B =14622.679238 C =15264.587109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.371 5.371 3 N -0.315 5.315 4 C 0.255 3.745 5 C -0.070 4.070 6 C -0.161 4.161 7 C -0.159 4.159 8 N -0.527 5.527 9 C 0.303 3.697 10 C -0.068 4.068 11 C 0.517 3.483 12 O -0.531 6.531 13 N -0.720 5.720 14 C 0.134 3.866 15 C -0.115 4.115 16 H 0.077 0.923 17 C -0.135 4.135 18 C 0.151 3.849 19 N -0.604 5.604 20 C -0.225 4.225 21 H 0.076 0.924 22 C -0.011 4.011 23 N -0.922 5.922 24 Si 0.915 3.085 25 H -0.286 1.286 26 H -0.289 1.289 27 H -0.285 1.285 28 C 0.142 3.858 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.131 0.869 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.133 0.867 38 H 0.118 0.882 39 H 0.404 0.596 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.107 0.893 45 H 0.013 0.987 46 H 0.253 0.747 47 H 0.023 0.977 48 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.912 18.071 -12.540 25.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.161 5.161 3 N -0.144 5.144 4 C -0.027 4.027 5 C -0.091 4.091 6 C -0.199 4.199 7 C -0.198 4.198 8 N -0.254 5.254 9 C 0.026 3.974 10 C -0.110 4.110 11 C 0.300 3.700 12 O -0.408 6.408 13 N -0.372 5.372 14 C 0.010 3.990 15 C -0.134 4.134 16 H 0.096 0.904 17 C -0.175 4.175 18 C 0.027 3.973 19 N -0.330 5.330 20 C -0.354 4.354 21 H 0.094 0.906 22 C -0.206 4.206 23 N -0.570 5.570 24 Si 0.745 3.255 25 H -0.212 1.212 26 H -0.215 1.215 27 H -0.212 1.212 28 C 0.016 3.984 29 H 0.102 0.898 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.149 0.851 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.114 0.886 37 H 0.151 0.849 38 H 0.136 0.864 39 H 0.238 0.762 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.125 0.875 45 H 0.031 0.969 46 H 0.064 0.936 47 H 0.041 0.959 48 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 11.883 18.997 -11.759 25.305 hybrid contribution -1.317 -0.939 -0.485 1.688 sum 10.566 18.058 -12.244 24.241 Atomic orbital electron populations 1.22003 0.73672 1.04770 1.04400 1.50064 1.07850 1.03720 1.54477 1.77916 1.01317 1.07481 1.27658 1.23021 0.92406 0.89189 0.98058 1.20046 0.93474 0.89916 1.05640 1.23031 1.03831 0.93700 0.99302 1.23022 1.03170 1.01869 0.91712 1.70209 1.19381 1.10878 1.24978 1.23251 0.86131 0.91376 0.96619 1.20200 1.05110 0.88441 0.97280 1.20033 0.77478 0.82399 0.90099 1.90775 1.49211 1.54628 1.46142 1.46000 1.68730 1.12357 1.10106 1.21482 1.01327 0.94772 0.81375 1.22456 0.97943 0.93517 0.99515 0.90433 1.23012 1.00228 1.00515 0.93712 1.21938 0.88430 0.90752 0.96221 1.44487 1.09268 1.44717 1.34543 1.19011 0.85959 1.17619 1.12762 0.90602 1.24796 0.98497 0.99116 0.98226 1.69779 1.34891 1.31310 1.21013 0.86152 0.84107 0.78040 0.77175 1.21227 1.21527 1.21164 1.21314 0.89975 0.93142 0.93999 0.89795 0.88797 0.88949 0.85142 0.87874 0.87854 0.87767 0.88634 0.84922 0.86433 0.76197 0.91194 0.91508 0.92061 0.91855 0.87542 0.96936 0.93623 0.95922 0.96424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.71 11.33 59.85 0.68 1.39 16 2 N -0.37 -4.44 4.04 -65.09 -0.26 -4.71 16 3 N -0.32 -4.30 12.24 32.42 0.40 -3.90 16 4 C 0.25 3.45 7.69 -156.85 -1.21 2.25 16 5 C -0.07 -0.71 6.33 -91.77 -0.58 -1.29 16 6 C -0.16 -1.30 10.13 -26.74 -0.27 -1.57 16 7 C -0.16 -1.22 10.23 -26.73 -0.27 -1.49 16 8 N -0.53 -7.59 11.19 -8.16 -0.09 -7.68 16 9 C 0.30 3.76 6.48 -155.70 -1.01 2.75 16 10 C -0.07 -0.59 6.03 -29.04 -0.17 -0.76 16 11 C 0.52 6.30 7.82 -10.99 -0.09 6.22 16 12 O -0.53 -9.03 16.03 5.56 0.09 -8.94 16 13 N -0.72 -8.02 5.40 -60.29 -0.33 -8.35 16 14 C 0.13 1.83 4.99 -4.04 -0.02 1.81 16 15 C -0.11 -1.79 3.02 -88.78 -0.27 -2.05 16 16 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 17 C -0.14 -2.42 6.53 -24.57 -0.16 -2.58 16 18 C 0.15 3.55 5.89 -2.53 -0.01 3.53 16 19 N -0.60 -14.88 3.39 -170.07 -0.58 -15.46 16 20 C -0.23 -6.11 10.27 -15.06 -0.15 -6.26 16 21 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 22 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 23 N -0.92 -26.37 10.09 55.49 0.56 -25.81 16 24 Si 0.91 21.61 29.55 -169.99 -5.02 16.59 16 25 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 28 C 0.14 2.69 6.52 -3.06 -0.02 2.67 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.09 0.43 7.10 -51.93 -0.37 0.07 16 32 H 0.13 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.10 0.95 7.88 -51.93 -0.41 0.54 16 34 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.13 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.12 0.59 7.12 -51.93 -0.37 0.22 16 39 H 0.40 3.47 8.33 -40.82 -0.34 3.13 16 40 H 0.07 1.07 8.06 -51.93 -0.42 0.66 16 41 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.06 1.14 8.05 -51.93 -0.42 0.72 16 44 H 0.11 2.84 5.87 -51.93 -0.31 2.53 16 45 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 47 H 0.02 0.44 7.77 -51.93 -0.40 0.03 16 48 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 396.03 15.07 5.97 5.97 Total: -1.00 -36.43 396.03 -10.57 -47.00 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -7.65 Total: 1.08 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: -3.66 Total: 4.22 kcal Atomic # 7 Polarization: -65.61 SS G_CDS: -0.30 Total: -65.91 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.09 Total: -8.94 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.43 -10.57 -47.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493264751.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.165 kcal (2) G-P(sol) polarization free energy of solvation -36.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds