Wall clock time and date at job start Tue Mar 31 2020 17:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47232 * 2 1 4 4 C 1.36452 * 127.13761 * 93.93313 * 3 2 1 5 5 N 1.38577 * 126.47095 * 0.02562 * 4 3 2 6 6 C 1.46907 * 110.99908 * 294.92334 * 5 4 3 7 7 C 1.46898 * 110.99787 * 170.97328 * 5 4 3 8 8 H 1.08999 * 109.47204 * 309.99138 * 7 5 4 9 9 C 1.52997 * 109.47447 * 69.99550 * 7 5 4 10 10 C 1.50707 * 109.47272 * 189.99555 * 7 5 4 11 11 H 1.08005 * 119.99392 * 0.02562 * 10 7 5 12 12 C 1.37868 * 120.00231 * 179.97438 * 10 7 5 13 13 N 1.31512 * 119.99931 * 180.02562 * 12 10 7 14 14 Si 1.86804 * 120.00132 * 0.02562 * 12 10 7 15 15 H 1.48498 * 109.47206 * 89.99688 * 14 12 10 16 16 H 1.48498 * 109.47144 * 209.99739 * 14 12 10 17 17 H 1.48498 * 109.47066 * 329.99908 * 14 12 10 18 18 N 1.31215 * 107.05385 * 180.24159 * 4 3 2 19 19 N 1.28533 * 109.86300 * 359.76263 * 18 4 3 20 20 C 1.30298 * 110.04774 * 359.97438 * 19 18 4 21 21 C 1.50704 * 126.34186 * 179.97438 * 20 19 18 22 22 C 1.47203 * 109.54042 * 236.15326 * 21 20 19 23 23 N 3.61902 * 56.41552 * 289.71560 * 2 1 3 24 24 C 1.53200 * 109.54131 * 115.89353 * 21 20 19 25 25 C 1.53093 * 109.15287 * 183.15422 * 24 21 20 26 26 O 1.42902 * 109.41935 * 57.60078 * 25 24 21 27 27 C 1.42892 * 114.10070 * 298.83708 * 26 25 24 28 28 C 1.53092 * 109.41636 * 61.15956 * 27 26 25 29 29 H 1.09004 * 109.47659 * 173.70452 * 1 2 3 30 30 H 1.09008 * 109.46747 * 293.70419 * 1 2 3 31 31 H 1.09006 * 109.47657 * 53.70205 * 1 2 3 32 32 H 1.09002 * 109.46815 * 239.99993 * 2 1 3 33 33 H 1.08991 * 109.47163 * 120.00579 * 2 1 3 34 34 H 1.08997 * 109.46734 * 69.79295 * 6 5 4 35 35 H 1.08994 * 109.46886 * 189.79574 * 6 5 4 36 36 H 1.09000 * 109.46609 * 309.79679 * 6 5 4 37 37 H 1.09003 * 109.47048 * 60.00076 * 9 7 5 38 38 H 1.08994 * 109.47525 * 179.97438 * 9 7 5 39 39 H 1.08995 * 109.47483 * 300.00001 * 9 7 5 40 40 H 0.97005 * 120.00046 * 180.02562 * 13 12 10 41 41 H 1.09003 * 109.53929 * 63.24693 * 24 21 20 42 42 H 1.09000 * 109.51780 * 303.05411 * 24 21 20 43 43 H 1.08995 * 109.47946 * 297.61731 * 25 24 21 44 44 H 1.09003 * 109.48262 * 177.58902 * 25 24 21 45 45 H 1.09004 * 109.48555 * 181.14299 * 27 26 25 46 46 H 1.09006 * 109.48462 * 301.16277 * 27 26 25 47 47 H 1.09001 * 109.51848 * 62.30064 * 28 27 26 48 48 H 1.09005 * 109.52468 * 182.42032 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3633 2.1330 1.0852 5 7 2.3194 1.7338 2.4115 6 6 0.9375 1.4762 2.8383 7 6 2.9626 2.7271 3.2818 8 1 3.9449 2.9787 2.8819 9 6 2.0983 3.9880 3.3424 10 6 3.1160 2.1561 4.6681 11 1 2.7705 1.1552 4.8811 12 6 3.6982 2.9110 5.6641 13 7 3.8325 2.4125 6.8736 14 14 4.2964 4.6418 5.2955 15 1 3.1981 5.6092 5.5468 16 1 5.4503 4.9641 6.1728 17 1 4.7162 4.7282 3.8737 18 7 2.7400 3.3069 0.6361 19 7 2.6569 3.3311 -0.6464 20 6 2.2263 2.1832 -1.0877 21 6 1.9935 1.8112 -2.5295 22 6 0.6024 1.3623 -2.7036 23 7 -0.4719 1.0171 -2.8382 24 6 2.9513 0.6843 -2.9290 25 6 2.7622 0.3675 -4.4148 26 8 2.9895 1.5493 -5.1853 27 6 2.0924 2.6211 -4.8882 28 6 2.2545 3.0287 -3.4215 29 1 -0.3634 -1.0215 -0.1127 30 1 -0.3633 0.4132 0.9411 31 1 -0.3634 0.6084 -0.8283 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 0.5665 0.5777 2.3452 35 1 0.9113 1.3350 3.9187 36 1 0.3095 2.3249 2.5673 37 1 1.1161 3.7364 3.7424 38 1 2.5753 4.7249 3.9885 39 1 1.9874 4.4011 2.3399 40 1 4.2418 2.9438 7.5745 41 1 2.7354 -0.2049 -2.3366 42 1 3.9794 1.0003 -2.7519 43 1 1.7455 0.0130 -4.5843 44 1 3.4711 -0.4042 -4.7151 45 1 2.3187 3.4731 -5.5293 46 1 1.0668 2.2962 -5.0641 47 1 3.2685 3.3921 -3.2544 48 1 1.5409 3.8170 -3.1814 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650296998.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:03 Heat of formation + Delta-G solvation = 99.428712 kcal Electronic energy + Delta-G solvation = -30599.492435 eV Core-core repulsion = 26692.787577 eV Total energy + Delta-G solvation = -3906.704857 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.00359 -40.23703 -37.72811 -37.14047 -35.62857 -34.64431 -32.72265 -31.70286 -30.73182 -30.07711 -29.28814 -26.58843 -25.53316 -24.98976 -24.36697 -23.97195 -22.38286 -21.76822 -20.88519 -19.53370 -17.78594 -17.29506 -16.82825 -16.57522 -16.34285 -15.85497 -15.52097 -15.42269 -15.13676 -14.88110 -14.72162 -14.40405 -14.02470 -13.68403 -13.64433 -13.30743 -12.99061 -12.92406 -12.89188 -12.50119 -12.36667 -12.27119 -12.17491 -11.85135 -11.79496 -11.58052 -11.44184 -11.30069 -11.15836 -10.99025 -10.84518 -10.58072 -10.28548 -10.08137 -10.05632 -9.96561 -9.63420 -9.31087 -9.14797 -8.64514 -7.74718 -6.16102 -4.17317 1.75721 2.17083 2.22317 2.38740 2.98791 3.27314 3.33047 3.39125 3.44636 3.45476 3.89284 4.10764 4.15142 4.21723 4.30471 4.36090 4.46458 4.71970 4.74009 4.87695 4.92902 4.95454 5.09502 5.16538 5.22895 5.25258 5.26679 5.36758 5.43433 5.53348 5.55299 5.59121 5.72070 5.79259 5.84408 5.95333 6.07461 6.23342 6.35620 6.50276 6.51110 6.62402 6.72309 6.93061 6.99952 7.04774 7.45750 7.50953 7.79872 8.45974 8.84782 8.98508 9.44345 10.95789 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.020690 B = 0.003479 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.968858 B = 8047.156540 C = 8685.313047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.099 3.901 3 N -0.475 5.475 4 C 0.394 3.606 5 N -0.441 5.441 6 C 0.026 3.974 7 C 0.199 3.801 8 H 0.054 0.946 9 C -0.186 4.186 10 C -0.515 4.515 11 H 0.084 0.916 12 C 0.078 3.922 13 N -0.895 5.895 14 Si 0.882 3.118 15 H -0.278 1.278 16 H -0.296 1.296 17 H -0.260 1.260 18 N -0.319 5.319 19 N -0.258 5.258 20 C 0.144 3.856 21 C 0.142 3.858 22 C 0.211 3.789 23 N -0.405 5.405 24 C -0.149 4.149 25 C 0.061 3.939 26 O -0.373 6.373 27 C 0.057 3.943 28 C -0.132 4.132 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.109 0.891 34 H 0.059 0.941 35 H 0.104 0.896 36 H 0.031 0.969 37 H 0.049 0.951 38 H 0.049 0.951 39 H 0.056 0.944 40 H 0.266 0.734 41 H 0.085 0.915 42 H 0.105 0.895 43 H 0.051 0.949 44 H 0.107 0.893 45 H 0.109 0.891 46 H 0.049 0.951 47 H 0.109 0.891 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.725 -5.093 -21.846 22.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.023 4.023 3 N -0.171 5.171 4 C 0.039 3.961 5 N -0.164 5.164 6 C -0.120 4.120 7 C 0.093 3.907 8 H 0.072 0.928 9 C -0.245 4.245 10 C -0.553 4.553 11 H 0.101 0.899 12 C -0.125 4.125 13 N -0.532 5.532 14 Si 0.711 3.289 15 H -0.205 1.205 16 H -0.223 1.223 17 H -0.185 1.185 18 N -0.164 5.164 19 N -0.098 5.098 20 C -0.124 4.124 21 C 0.136 3.864 22 C -0.108 4.108 23 N -0.080 5.080 24 C -0.188 4.188 25 C -0.016 4.016 26 O -0.292 6.292 27 C -0.020 4.020 28 C -0.171 4.171 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.108 0.892 33 H 0.128 0.872 34 H 0.078 0.922 35 H 0.123 0.877 36 H 0.050 0.950 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.103 0.897 42 H 0.124 0.876 43 H 0.069 0.931 44 H 0.125 0.875 45 H 0.127 0.873 46 H 0.067 0.933 47 H 0.128 0.872 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.400 -4.615 -21.883 23.007 hybrid contribution -0.401 0.274 0.531 0.720 sum -5.801 -4.341 -21.352 22.548 Atomic orbital electron populations 1.22591 0.94120 1.03805 1.04300 1.21988 0.95646 0.79412 1.05289 1.46150 1.51529 1.13632 1.05783 1.23235 0.97312 0.86585 0.88961 1.59041 1.17745 1.44833 0.94750 1.22636 0.85777 0.99246 1.04369 1.19823 0.93338 0.85561 0.91932 0.92811 1.22817 1.00756 1.00094 1.00790 1.20802 1.41034 1.02783 0.90721 0.89850 1.24805 0.94915 0.98066 0.94731 1.69859 1.43935 1.37612 1.01786 0.86932 0.78001 0.85002 0.78920 1.20489 1.22305 1.18487 1.74864 1.25026 1.14721 1.01771 1.73930 1.15000 1.16708 1.04188 1.23415 1.09440 0.90412 0.89138 1.16307 0.83728 0.98066 0.88325 1.28791 0.94585 0.93799 0.93619 1.81202 1.11156 1.08323 1.07344 1.22518 1.00683 0.97314 0.98275 1.22627 1.01681 0.88275 0.89048 1.87985 1.56904 1.22644 1.61638 1.22722 0.93400 0.90824 0.95027 1.22209 1.06504 0.94985 0.93403 0.90249 0.90854 0.91377 0.89188 0.87233 0.92238 0.87705 0.94993 0.93231 0.93276 0.92492 0.92380 0.89695 0.87641 0.93114 0.87452 0.87309 0.93264 0.87227 0.88867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.02 9.83 37.16 0.37 -1.66 16 2 C 0.10 1.10 5.33 -4.04 -0.02 1.07 16 3 N -0.48 -6.92 2.81 -114.09 -0.32 -7.24 16 4 C 0.39 7.34 6.66 -318.88 -2.12 5.21 16 5 N -0.44 -8.78 4.73 -176.08 -0.83 -9.61 16 6 C 0.03 0.46 7.97 60.07 0.48 0.94 16 7 C 0.20 4.66 1.60 -68.86 -0.11 4.55 16 8 H 0.05 1.37 6.95 -51.93 -0.36 1.01 16 9 C -0.19 -4.17 7.91 37.16 0.29 -3.87 16 10 C -0.52 -13.73 8.35 -34.44 -0.29 -14.02 16 11 H 0.08 2.37 7.47 -52.48 -0.39 1.97 16 12 C 0.08 2.17 5.45 -17.82 -0.10 2.07 16 13 N -0.89 -26.35 13.96 55.43 0.77 -25.57 16 14 Si 0.88 21.76 24.37 -169.99 -4.14 17.62 16 15 H -0.28 -6.72 6.87 56.52 0.39 -6.33 16 16 H -0.30 -7.29 7.11 56.52 0.40 -6.89 16 17 H -0.26 -6.37 6.53 56.52 0.37 -6.00 16 18 N -0.32 -6.42 9.38 30.31 0.28 -6.14 16 19 N -0.26 -4.48 11.48 32.99 0.38 -4.10 16 20 C 0.14 2.02 6.32 -154.01 -0.97 1.04 16 21 C 0.14 1.43 0.50 -158.25 -0.08 1.35 16 22 C 0.21 2.27 9.34 -20.74 -0.19 2.08 16 23 N -0.41 -4.91 16.75 42.17 0.71 -4.20 16 24 C -0.15 -1.16 4.79 -26.58 -0.13 -1.28 16 25 C 0.06 0.42 6.61 37.21 0.25 0.66 16 26 O -0.37 -3.17 10.76 -35.23 -0.38 -3.55 16 27 C 0.06 0.42 6.61 37.20 0.25 0.67 16 28 C -0.13 -1.17 4.42 -26.60 -0.12 -1.29 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.84 5.64 -51.92 -0.29 0.55 16 31 H 0.07 0.81 4.19 -51.93 -0.22 0.60 16 32 H 0.09 0.76 5.46 -51.93 -0.28 0.48 16 33 H 0.11 1.23 7.85 -51.93 -0.41 0.82 16 34 H 0.06 0.84 4.57 -51.93 -0.24 0.60 16 35 H 0.10 1.97 6.60 -51.93 -0.34 1.63 16 36 H 0.03 0.55 7.00 -51.93 -0.36 0.18 16 37 H 0.05 1.05 6.64 -51.93 -0.34 0.71 16 38 H 0.05 1.15 3.27 -51.93 -0.17 0.98 16 39 H 0.06 1.24 6.02 -51.93 -0.31 0.93 16 40 H 0.27 7.40 8.31 -40.82 -0.34 7.07 16 41 H 0.08 0.57 5.59 -51.93 -0.29 0.28 16 42 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.05 0.35 7.39 -51.93 -0.38 -0.04 16 44 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.05 0.37 7.39 -51.93 -0.38 -0.02 16 47 H 0.11 1.00 8.11 -51.93 -0.42 0.58 16 48 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 355.60 15.07 5.36 5.36 Total: -1.00 -32.21 355.60 -7.17 -39.39 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -6.50 Total: 0.52 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: -2.50 Total: -2.47 kcal Atomic # 7 Polarization: -57.86 SS G_CDS: 0.99 Total: -56.87 kcal Atomic # 8 Polarization: -3.17 SS G_CDS: -0.38 Total: -3.55 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.14 Total: 17.62 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.21 -7.17 -39.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650296998.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.817 kcal (2) G-P(sol) polarization free energy of solvation -32.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds