Wall clock time and date at job start Tue Mar 31 2020 17:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47232 * 2 1 4 4 C 1.36452 * 127.13761 * 93.93313 * 3 2 1 5 5 N 1.38577 * 126.47095 * 0.02562 * 4 3 2 6 6 C 1.46907 * 110.99908 * 294.92334 * 5 4 3 7 7 C 1.46898 * 110.99787 * 170.97328 * 5 4 3 8 8 H 1.08999 * 109.47204 * 309.99138 * 7 5 4 9 9 C 1.52997 * 109.47447 * 69.99550 * 7 5 4 10 10 C 1.50707 * 109.47272 * 189.99555 * 7 5 4 11 11 H 1.08005 * 119.99392 * 0.02562 * 10 7 5 12 12 C 1.37868 * 120.00231 * 179.97438 * 10 7 5 13 13 N 1.31512 * 119.99931 * 180.02562 * 12 10 7 14 14 Si 1.86804 * 120.00132 * 0.02562 * 12 10 7 15 15 H 1.48498 * 109.47206 * 89.99688 * 14 12 10 16 16 H 1.48498 * 109.47144 * 209.99739 * 14 12 10 17 17 H 1.48498 * 109.47066 * 329.99908 * 14 12 10 18 18 N 1.31215 * 107.05385 * 180.24159 * 4 3 2 19 19 N 1.28533 * 109.86300 * 359.76263 * 18 4 3 20 20 C 1.30298 * 110.04774 * 359.97438 * 19 18 4 21 21 C 1.50704 * 126.34186 * 179.97438 * 20 19 18 22 22 C 1.47203 * 109.54042 * 236.15326 * 21 20 19 23 23 N 3.61902 * 56.41552 * 289.71560 * 2 1 3 24 24 C 1.53200 * 109.54131 * 115.89353 * 21 20 19 25 25 C 1.53093 * 109.15287 * 183.15422 * 24 21 20 26 26 O 1.42902 * 109.41935 * 57.60078 * 25 24 21 27 27 C 1.42892 * 114.10070 * 298.83708 * 26 25 24 28 28 C 1.53092 * 109.41636 * 61.15956 * 27 26 25 29 29 H 1.09004 * 109.47659 * 173.70452 * 1 2 3 30 30 H 1.09008 * 109.46747 * 293.70419 * 1 2 3 31 31 H 1.09006 * 109.47657 * 53.70205 * 1 2 3 32 32 H 1.09002 * 109.46815 * 239.99993 * 2 1 3 33 33 H 1.08991 * 109.47163 * 120.00579 * 2 1 3 34 34 H 1.08997 * 109.46734 * 69.79295 * 6 5 4 35 35 H 1.08994 * 109.46886 * 189.79574 * 6 5 4 36 36 H 1.09000 * 109.46609 * 309.79679 * 6 5 4 37 37 H 1.09003 * 109.47048 * 60.00076 * 9 7 5 38 38 H 1.08994 * 109.47525 * 179.97438 * 9 7 5 39 39 H 1.08995 * 109.47483 * 300.00001 * 9 7 5 40 40 H 0.97005 * 120.00046 * 180.02562 * 13 12 10 41 41 H 1.09003 * 109.53929 * 63.24693 * 24 21 20 42 42 H 1.09000 * 109.51780 * 303.05411 * 24 21 20 43 43 H 1.08995 * 109.47946 * 297.61731 * 25 24 21 44 44 H 1.09003 * 109.48262 * 177.58902 * 25 24 21 45 45 H 1.09004 * 109.48555 * 181.14299 * 27 26 25 46 46 H 1.09006 * 109.48462 * 301.16277 * 27 26 25 47 47 H 1.09001 * 109.51848 * 62.30064 * 28 27 26 48 48 H 1.09005 * 109.52468 * 182.42032 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3633 2.1330 1.0852 5 7 2.3194 1.7338 2.4115 6 6 0.9375 1.4762 2.8383 7 6 2.9626 2.7271 3.2818 8 1 3.9449 2.9787 2.8819 9 6 2.0983 3.9880 3.3424 10 6 3.1160 2.1561 4.6681 11 1 2.7705 1.1552 4.8811 12 6 3.6982 2.9110 5.6641 13 7 3.8325 2.4125 6.8736 14 14 4.2964 4.6418 5.2955 15 1 3.1981 5.6092 5.5468 16 1 5.4503 4.9641 6.1728 17 1 4.7162 4.7282 3.8737 18 7 2.7400 3.3069 0.6361 19 7 2.6569 3.3311 -0.6464 20 6 2.2263 2.1832 -1.0877 21 6 1.9935 1.8112 -2.5295 22 6 0.6024 1.3623 -2.7036 23 7 -0.4719 1.0171 -2.8382 24 6 2.9513 0.6843 -2.9290 25 6 2.7622 0.3675 -4.4148 26 8 2.9895 1.5493 -5.1853 27 6 2.0924 2.6211 -4.8882 28 6 2.2545 3.0287 -3.4215 29 1 -0.3634 -1.0215 -0.1127 30 1 -0.3633 0.4132 0.9411 31 1 -0.3634 0.6084 -0.8283 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 0.5665 0.5777 2.3452 35 1 0.9113 1.3350 3.9187 36 1 0.3095 2.3249 2.5673 37 1 1.1161 3.7364 3.7424 38 1 2.5753 4.7249 3.9885 39 1 1.9874 4.4011 2.3399 40 1 4.2418 2.9438 7.5745 41 1 2.7354 -0.2049 -2.3366 42 1 3.9794 1.0003 -2.7519 43 1 1.7455 0.0130 -4.5843 44 1 3.4711 -0.4042 -4.7151 45 1 2.3187 3.4731 -5.5293 46 1 1.0668 2.2962 -5.0641 47 1 3.2685 3.3921 -3.2544 48 1 1.5409 3.8170 -3.1814 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650296998.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:02 Heat of formation + Delta-G solvation = 78.893238 kcal Electronic energy + Delta-G solvation = -30600.382920 eV Core-core repulsion = 26692.787577 eV Total energy + Delta-G solvation = -3907.595342 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.26350 -40.98300 -39.29741 -37.99359 -36.73060 -35.53798 -34.68788 -32.31160 -32.03068 -31.57898 -30.59161 -27.61833 -27.29705 -26.50437 -25.29778 -24.72885 -23.55319 -22.80581 -22.07768 -21.05193 -18.94054 -18.62414 -18.10051 -17.64641 -17.24643 -17.01661 -16.97238 -16.51877 -16.23591 -15.97033 -15.58719 -15.39504 -15.37545 -15.12155 -14.72919 -14.50666 -14.27025 -14.02824 -13.88737 -13.72246 -13.60454 -13.46013 -13.28206 -13.10858 -12.97843 -12.85950 -12.59417 -12.49847 -12.32549 -12.32050 -12.02788 -11.94116 -11.56228 -11.49581 -11.47325 -11.21892 -11.09163 -10.88049 -10.71115 -10.62022 -9.24185 -8.32575 -6.35992 0.57070 1.07550 1.29398 1.32093 1.37461 1.39433 1.47482 1.71851 2.29751 2.44340 2.75157 2.86757 3.01660 3.03472 3.34020 3.42550 3.46275 3.81732 3.82358 3.87277 4.08589 4.12403 4.18956 4.23335 4.30963 4.35877 4.39560 4.42138 4.48205 4.53521 4.62752 4.64152 4.68391 4.77194 4.78887 4.84632 4.92897 4.95826 4.99836 5.05028 5.11193 5.12724 5.21211 5.47605 5.57491 5.78515 6.10380 6.15193 6.17027 6.48051 6.68024 7.28304 7.66638 8.82602 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.020690 B = 0.003479 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.968858 B = 8047.156540 C = 8685.313047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.091 3.909 3 N -0.467 5.467 4 C 0.376 3.624 5 N -0.447 5.447 6 C 0.031 3.969 7 C 0.209 3.791 8 H 0.032 0.968 9 C -0.176 4.176 10 C -0.507 4.507 11 H 0.057 0.943 12 C 0.031 3.969 13 N -0.936 5.936 14 Si 0.933 3.067 15 H -0.268 1.268 16 H -0.294 1.294 17 H -0.259 1.259 18 N -0.355 5.355 19 N -0.287 5.287 20 C 0.170 3.830 21 C 0.143 3.857 22 C 0.224 3.776 23 N -0.422 5.422 24 C -0.146 4.146 25 C 0.061 3.939 26 O -0.385 6.385 27 C 0.062 3.938 28 C -0.131 4.131 29 H 0.105 0.895 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.122 0.878 33 H 0.110 0.890 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.031 0.969 37 H 0.055 0.945 38 H 0.039 0.961 39 H 0.062 0.938 40 H 0.268 0.732 41 H 0.099 0.901 42 H 0.105 0.895 43 H 0.053 0.947 44 H 0.130 0.870 45 H 0.127 0.873 46 H 0.050 0.950 47 H 0.106 0.894 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.220 -5.856 -24.549 25.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.030 4.030 3 N -0.162 5.162 4 C 0.019 3.981 5 N -0.169 5.169 6 C -0.115 4.115 7 C 0.102 3.898 8 H 0.050 0.950 9 C -0.235 4.235 10 C -0.546 4.546 11 H 0.076 0.924 12 C -0.168 4.168 13 N -0.576 5.576 14 Si 0.761 3.239 15 H -0.194 1.194 16 H -0.222 1.222 17 H -0.184 1.184 18 N -0.200 5.200 19 N -0.126 5.126 20 C -0.099 4.099 21 C 0.137 3.863 22 C -0.095 4.095 23 N -0.097 5.097 24 C -0.185 4.185 25 C -0.015 4.015 26 O -0.304 6.304 27 C -0.015 4.015 28 C -0.170 4.170 29 H 0.124 0.876 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.140 0.860 33 H 0.129 0.871 34 H 0.111 0.889 35 H 0.103 0.897 36 H 0.050 0.950 37 H 0.074 0.926 38 H 0.057 0.943 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.117 0.883 42 H 0.123 0.877 43 H 0.072 0.928 44 H 0.148 0.852 45 H 0.145 0.855 46 H 0.068 0.932 47 H 0.124 0.876 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.915 -5.393 -24.616 25.885 hybrid contribution -0.306 0.402 1.246 1.344 sum -6.222 -4.991 -23.370 24.694 Atomic orbital electron populations 1.22561 0.93484 1.05150 1.03127 1.22360 0.96105 0.77605 1.06976 1.46326 1.50593 1.14625 1.04629 1.22985 0.98905 0.87271 0.88950 1.58885 1.18917 1.43834 0.95311 1.22644 0.84716 1.00741 1.03402 1.19432 0.93103 0.86626 0.90622 0.94984 1.22684 1.00675 0.99205 1.00922 1.20972 1.39621 1.01624 0.92347 0.92441 1.25459 0.95388 1.01389 0.94596 1.69965 1.45634 1.39159 1.02795 0.86086 0.77788 0.81367 0.78615 1.19401 1.22155 1.18366 1.74733 1.25917 1.16098 1.03268 1.73860 1.17108 1.18412 1.03200 1.24126 1.06173 0.89193 0.90452 1.16571 0.84119 0.99714 0.85944 1.28727 0.94339 0.93226 0.93165 1.81231 1.11558 1.09125 1.07795 1.22578 0.99806 0.96690 0.99425 1.22762 1.02606 0.88247 0.87911 1.87982 1.57232 1.23198 1.61962 1.22760 0.93383 0.91345 0.94013 1.22244 1.06160 0.94337 0.94301 0.87609 0.91985 0.92507 0.86041 0.87144 0.88943 0.89703 0.95037 0.92560 0.94269 0.91885 0.92240 0.88291 0.87659 0.92835 0.85194 0.85525 0.93170 0.87576 0.89310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.42 9.83 71.98 0.71 -2.72 16 2 C 0.09 1.75 5.33 86.38 0.46 2.21 16 3 N -0.47 -12.83 2.81 -514.86 -1.45 -14.28 16 4 C 0.38 13.76 6.66 260.12 1.73 15.49 16 5 N -0.45 -17.77 4.73 -711.00 -3.37 -21.13 16 6 C 0.03 1.07 7.97 127.69 1.02 2.09 16 7 C 0.21 9.90 1.60 44.17 0.07 9.97 16 8 H 0.03 1.67 6.95 -2.39 -0.02 1.65 16 9 C -0.18 -7.88 7.91 71.98 0.57 -7.31 16 10 C -0.51 -27.64 8.35 25.60 0.21 -27.42 16 11 H 0.06 3.37 7.47 -2.91 -0.02 3.35 16 12 C 0.03 1.74 5.45 84.65 0.46 2.20 16 13 N -0.94 -56.31 13.96 21.44 0.30 -56.01 16 14 Si 0.93 45.36 24.37 68.60 1.67 47.03 16 15 H -0.27 -12.48 6.87 99.48 0.68 -11.80 16 16 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 17 H -0.26 -12.45 6.53 99.48 0.65 -11.80 16 18 N -0.36 -14.26 9.38 -58.01 -0.54 -14.80 16 19 N -0.29 -9.77 11.48 -49.53 -0.57 -10.34 16 20 C 0.17 4.50 6.32 137.64 0.87 5.37 16 21 C 0.14 2.56 0.50 -54.61 -0.03 2.53 16 22 C 0.22 4.26 9.34 89.44 0.83 5.10 16 23 N -0.42 -9.20 16.75 20.01 0.34 -8.86 16 24 C -0.15 -1.82 4.79 30.69 0.15 -1.67 16 25 C 0.06 0.63 6.61 72.01 0.48 1.11 16 26 O -0.39 -5.42 10.76 -148.98 -1.60 -7.03 16 27 C 0.06 0.76 6.61 72.01 0.48 1.24 16 28 C -0.13 -2.09 4.42 30.68 0.14 -1.95 16 29 H 0.11 1.42 8.14 -2.38 -0.02 1.40 16 30 H 0.06 1.29 5.64 -2.38 -0.01 1.27 16 31 H 0.06 1.21 4.19 -2.38 -0.01 1.20 16 32 H 0.12 1.58 5.46 -2.39 -0.01 1.56 16 33 H 0.11 2.19 7.85 -2.39 -0.02 2.18 16 34 H 0.09 2.49 4.57 -2.39 -0.01 2.48 16 35 H 0.08 3.24 6.60 -2.39 -0.02 3.22 16 36 H 0.03 1.06 7.00 -2.39 -0.02 1.04 16 37 H 0.06 2.38 6.64 -2.39 -0.02 2.37 16 38 H 0.04 1.81 3.27 -2.39 -0.01 1.80 16 39 H 0.06 2.74 6.02 -2.39 -0.01 2.73 16 40 H 0.27 15.22 8.31 -92.70 -0.77 14.45 16 41 H 0.10 0.94 5.59 -2.39 -0.01 0.93 16 42 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.05 0.55 7.39 -2.39 -0.02 0.53 16 44 H 0.13 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.05 0.62 7.39 -2.38 -0.02 0.61 16 47 H 0.11 1.79 8.11 -2.39 -0.02 1.77 16 48 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 Total: -1.00 -70.83 355.60 3.85 -66.98 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: 0.93 Total: 12.22 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: 8.15 Total: 6.23 kcal Atomic # 7 Polarization: -120.13 SS G_CDS: -5.29 Total: -125.42 kcal Atomic # 8 Polarization: -5.42 SS G_CDS: -1.60 Total: -7.03 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.67 Total: 47.03 kcal Total: -70.83 3.85 -66.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650296998.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.870 kcal (2) G-P(sol) polarization free energy of solvation -70.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds