Wall clock time and date at job start Tue Mar 31 2020 17:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47369 * 2 1 4 4 C 1.53000 * 109.46634 * 119.99855 * 2 1 3 5 5 N 1.46505 * 109.46814 * 175.00085 * 4 2 1 6 6 C 1.34771 * 119.99954 * 180.02562 * 5 4 2 7 7 O 1.21483 * 120.00186 * 359.97438 * 6 5 4 8 8 C 1.48462 * 120.00203 * 179.97438 * 6 5 4 9 9 C 1.39504 * 120.50947 * 180.02562 * 8 6 5 10 10 C 1.38780 * 118.43012 * 179.97438 * 9 8 6 11 11 N 1.32136 * 119.24216 * 359.97438 * 10 9 8 12 12 C 1.32568 * 120.95816 * 0.02562 * 11 10 9 13 13 N 1.38437 * 119.13590 * 180.02562 * 12 11 10 14 14 C 1.48536 * 110.99674 * 242.60228 * 13 12 11 15 15 C 1.54939 * 103.22680 * 159.71941 * 14 13 12 16 16 C 1.54595 * 102.91867 * 322.58563 * 15 14 13 17 17 C 1.47896 * 110.99923 * 359.97438 * 13 12 11 18 18 N 1.32287 * 121.72482 * 359.73857 * 12 11 10 19 19 N 1.46502 * 109.47248 * 239.99970 * 2 1 3 20 20 C 1.46503 * 119.99982 * 300.00135 * 19 2 1 21 21 C 1.36934 * 120.00322 * 120.00411 * 19 2 1 22 22 H 1.08000 * 119.99885 * 38.94794 * 21 19 2 23 23 C 1.38813 * 120.00136 * 218.95338 * 21 19 2 24 24 N 1.31622 * 120.00068 * 26.48116 * 23 21 19 25 25 Si 1.86797 * 120.00021 * 206.20836 * 23 21 19 26 26 H 1.48498 * 109.47189 * 89.99831 * 25 23 21 27 27 H 1.48501 * 109.47137 * 209.99695 * 25 23 21 28 28 H 1.48506 * 109.47066 * 329.99460 * 25 23 21 29 29 H 1.08994 * 109.47600 * 300.00315 * 1 2 3 30 30 H 1.09010 * 109.46620 * 60.00309 * 1 2 3 31 31 H 1.09003 * 109.47174 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47296 * 294.99603 * 4 2 1 33 33 H 1.09005 * 109.47283 * 55.00461 * 4 2 1 34 34 H 0.97000 * 119.99712 * 0.02562 * 5 4 2 35 35 H 1.08007 * 120.78443 * 0.02562 * 9 8 6 36 36 H 1.08000 * 120.37566 * 179.97438 * 10 9 8 37 37 H 1.08996 * 110.66688 * 278.15703 * 14 13 12 38 38 H 1.08998 * 110.66807 * 41.28503 * 14 13 12 39 39 H 1.09000 * 110.72299 * 204.22409 * 15 14 13 40 40 H 1.09003 * 110.87247 * 81.01094 * 15 14 13 41 41 H 1.09000 * 110.30877 * 263.03508 * 16 15 14 42 42 H 1.09000 * 110.30632 * 140.87400 * 16 15 14 43 43 H 1.09005 * 109.92113 * 333.51002 * 17 13 12 44 44 H 1.08996 * 109.91961 * 94.80665 * 17 13 12 45 45 H 1.09006 * 109.47148 * 275.29411 * 20 19 2 46 46 H 1.08999 * 109.46860 * 35.28925 * 20 19 2 47 47 H 1.08996 * 109.47041 * 155.29256 * 20 19 2 48 48 H 0.96996 * 119.99821 * 5.07656 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1907 6 6 4.1729 -1.4291 2.1908 7 8 3.5688 -1.8849 3.1411 8 6 5.6524 -1.5362 2.1312 9 6 6.3595 -2.1584 3.1602 10 6 7.7416 -2.2350 3.0600 11 7 8.3414 -1.7208 2.0009 12 6 7.6425 -1.1353 1.0385 13 7 8.3096 -0.6097 -0.0547 14 6 8.1125 0.8599 -0.1423 15 6 9.2928 1.3234 -1.0327 16 6 10.4516 0.4086 -0.5743 17 6 9.7694 -0.8138 0.0668 18 7 6.3238 -1.0452 1.0928 19 7 2.0184 -0.6906 -1.1962 20 6 1.6645 -2.0932 -1.4280 21 6 2.8057 -0.0252 -2.0975 22 1 3.5577 0.6675 -1.7496 23 6 2.6372 -0.2409 -3.4584 24 7 1.4688 -0.6295 -3.9235 25 14 4.0666 0.0276 -4.6306 26 1 4.8309 -1.2371 -4.7772 27 1 3.5470 0.4485 -5.9566 28 1 4.9582 1.0851 -4.0900 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 1.7516 -0.1583 2.1369 33 1 1.6053 -1.7198 1.2952 34 1 3.9824 -0.4621 0.4320 35 1 5.8435 -2.5716 4.0144 36 1 8.3202 -2.7095 3.8387 37 1 7.1588 1.0926 -0.6159 38 1 8.1739 1.3159 0.8458 39 1 9.5302 2.3704 -0.8442 40 1 9.0695 1.1639 -2.0876 41 1 11.0724 0.9231 0.1591 42 1 11.0522 0.1012 -1.4304 43 1 10.0481 -0.8856 1.1182 44 1 10.0626 -1.7214 -0.4607 45 1 2.3625 -2.7373 -0.8931 46 1 0.6521 -2.2767 -1.0682 47 1 1.7155 -2.3092 -2.4951 48 1 0.7066 -0.6941 -3.3270 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674954900.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:51 Heat of formation + Delta-G solvation = 56.343642 kcal Electronic energy + Delta-G solvation = -29576.630466 eV Core-core repulsion = 25668.057300 eV Total energy + Delta-G solvation = -3908.573166 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.50273 -39.49443 -38.48288 -36.86077 -34.25769 -33.76356 -33.18653 -31.97722 -29.93892 -29.35959 -29.14886 -26.69951 -26.04180 -24.73140 -24.01459 -22.79571 -21.77782 -21.20407 -20.22206 -19.53707 -18.14435 -17.88856 -17.35485 -16.45595 -16.12277 -15.59100 -15.51828 -15.45437 -15.04206 -14.42238 -14.35968 -13.95216 -13.89426 -13.65325 -13.46303 -13.22489 -12.84853 -12.71662 -12.44640 -12.31206 -12.22605 -11.66306 -11.44500 -11.39941 -11.24024 -11.10787 -10.94072 -10.84173 -10.71171 -10.68695 -10.54446 -10.33085 -10.19402 -10.10550 -10.03643 -9.37487 -9.31253 -8.69010 -8.55342 -8.34121 -6.82650 -6.04921 -3.40109 0.47665 0.84845 2.80861 3.03099 3.30214 3.51062 3.54398 3.69255 3.75133 3.87736 4.31588 4.55081 4.56014 4.59016 4.63150 4.80419 4.90322 5.08396 5.10599 5.24517 5.25398 5.37605 5.47204 5.51253 5.60342 5.60585 5.62714 5.80819 5.86438 5.88307 5.97216 5.99363 6.01656 6.10133 6.20550 6.31422 6.36691 6.51128 6.58382 6.69972 6.78598 6.82527 6.96070 7.03206 7.21658 7.79190 8.00059 8.09486 8.40732 8.59123 9.11258 9.79466 10.26661 11.15118 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.009056 B = 0.004750 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3091.006251 B = 5893.814594 C = 8382.541121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.153 3.847 3 H 0.071 0.929 4 C 0.106 3.894 5 N -0.676 5.676 6 C 0.560 3.440 7 O -0.543 6.543 8 C 0.165 3.835 9 C -0.205 4.205 10 C 0.170 3.830 11 N -0.542 5.542 12 C 0.486 3.514 13 N -0.442 5.442 14 C 0.052 3.948 15 C -0.125 4.125 16 C -0.132 4.132 17 C 0.038 3.962 18 N -0.491 5.491 19 N -0.590 5.590 20 C 0.119 3.881 21 C -0.357 4.357 22 H 0.051 0.949 23 C -0.013 4.013 24 N -0.902 5.902 25 Si 1.064 2.936 26 H -0.292 1.292 27 H -0.292 1.292 28 H -0.289 1.289 29 H 0.043 0.957 30 H 0.059 0.941 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.423 0.577 35 H 0.159 0.841 36 H 0.175 0.825 37 H 0.104 0.896 38 H 0.051 0.949 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.084 0.916 44 H 0.084 0.916 45 H -0.002 1.002 46 H 0.018 0.982 47 H 0.065 0.935 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.529 1.514 11.916 18.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.045 3.955 3 H 0.089 0.911 4 C -0.020 4.020 5 N -0.326 5.326 6 C 0.343 3.657 7 O -0.420 6.420 8 C 0.014 3.986 9 C -0.230 4.230 10 C 0.002 3.998 11 N -0.262 5.262 12 C 0.130 3.870 13 N -0.163 5.163 14 C -0.074 4.074 15 C -0.163 4.163 16 C -0.170 4.170 17 C -0.089 4.089 18 N -0.211 5.211 19 N -0.313 5.313 20 C -0.026 4.026 21 C -0.486 4.486 22 H 0.069 0.931 23 C -0.217 4.217 24 N -0.540 5.540 25 Si 0.894 3.106 26 H -0.219 1.219 27 H -0.218 1.218 28 H -0.216 1.216 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.262 0.738 35 H 0.176 0.824 36 H 0.192 0.808 37 H 0.122 0.878 38 H 0.070 0.930 39 H 0.097 0.903 40 H 0.102 0.898 41 H 0.089 0.911 42 H 0.095 0.905 43 H 0.102 0.898 44 H 0.103 0.897 45 H 0.016 0.984 46 H 0.037 0.963 47 H 0.083 0.917 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 14.801 1.241 9.632 17.702 hybrid contribution -0.517 -0.028 2.529 2.582 sum 14.284 1.214 12.161 18.798 Atomic orbital electron populations 1.22170 0.97530 1.01234 1.00828 1.20773 0.92305 0.95783 0.86632 0.91070 1.22067 0.78888 1.01359 0.99671 1.45848 1.08493 1.55635 1.22621 1.17795 0.84840 0.79599 0.83472 1.90751 1.68204 1.49151 1.33920 1.21651 0.95206 0.92187 0.89516 1.22780 0.96043 1.02312 1.01842 1.23124 0.91728 0.91230 0.93753 1.68206 1.41177 1.14408 1.02406 1.21100 0.86533 0.91961 0.87447 1.61300 1.09742 1.14147 1.31063 1.23292 1.01567 0.82851 0.99644 1.22549 0.93685 0.99332 1.00758 1.22450 0.97964 0.95687 1.00905 1.22962 0.84012 0.99317 1.02589 1.68027 1.08180 1.20691 1.24217 1.43889 1.58584 1.06525 1.22340 1.21038 0.95165 0.85124 1.01317 1.19809 1.13014 1.27568 0.88223 0.93116 1.25939 1.00877 0.98752 0.96175 1.70745 0.99562 1.45758 1.37927 0.83542 0.75020 0.76403 0.75656 1.21918 1.21794 1.21554 0.93771 0.92156 0.93207 0.92087 0.91974 0.73815 0.82351 0.80766 0.87796 0.93012 0.90262 0.89821 0.91148 0.90478 0.89822 0.89714 0.98432 0.96290 0.91655 0.91927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 9.16 37.16 0.34 -2.48 16 2 C 0.15 3.02 2.88 -67.93 -0.20 2.83 16 3 H 0.07 1.44 7.89 -51.93 -0.41 1.03 16 4 C 0.11 1.92 4.97 -4.04 -0.02 1.90 16 5 N -0.68 -12.59 5.38 -61.05 -0.33 -12.92 16 6 C 0.56 10.10 7.83 -12.05 -0.09 10.01 16 7 O -0.54 -10.53 16.42 5.38 0.09 -10.44 16 8 C 0.16 2.65 6.79 -82.66 -0.56 2.09 16 9 C -0.21 -2.61 9.71 -38.91 -0.38 -2.99 16 10 C 0.17 1.85 11.30 -17.22 -0.19 1.65 16 11 N -0.54 -7.12 8.12 -13.94 -0.11 -7.23 16 12 C 0.49 7.39 6.98 -322.93 -2.25 5.13 16 13 N -0.44 -6.21 5.36 -171.47 -0.92 -7.13 16 14 C 0.05 0.64 6.31 -1.90 -0.01 0.63 16 15 C -0.13 -1.19 7.06 -24.87 -0.18 -1.36 16 16 C -0.13 -1.12 6.93 -25.39 -0.18 -1.30 16 17 C 0.04 0.42 6.33 -2.77 -0.02 0.40 16 18 N -0.49 -8.26 9.48 -10.49 -0.10 -8.36 16 19 N -0.59 -13.89 1.93 -173.48 -0.34 -14.22 16 20 C 0.12 2.79 8.98 59.85 0.54 3.32 16 21 C -0.36 -9.40 9.00 -15.06 -0.14 -9.53 16 22 H 0.05 1.35 7.95 -52.49 -0.42 0.93 16 23 C -0.01 -0.35 4.73 -17.43 -0.08 -0.44 16 24 N -0.90 -26.27 12.35 55.49 0.69 -25.58 16 25 Si 1.06 24.99 29.99 -169.99 -5.10 19.89 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 28 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 29 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 1.18 8.14 -51.92 -0.42 0.75 16 31 H 0.05 0.88 6.69 -51.93 -0.35 0.53 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 1.18 7.84 -51.93 -0.41 0.77 16 34 H 0.42 8.46 7.28 -40.82 -0.30 8.16 16 35 H 0.16 1.76 7.73 -52.48 -0.41 1.36 16 36 H 0.18 1.13 8.06 -52.49 -0.42 0.71 16 37 H 0.10 1.44 8.14 -51.93 -0.42 1.01 16 38 H 0.05 0.61 7.99 -51.93 -0.42 0.19 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.08 0.92 6.46 -51.93 -0.34 0.58 16 44 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 45 H 0.00 -0.06 8.14 -51.93 -0.42 -0.48 16 46 H 0.02 0.40 6.45 -51.93 -0.33 0.07 16 47 H 0.07 1.72 5.83 -51.93 -0.30 1.41 16 48 H 0.27 7.91 7.40 -40.82 -0.30 7.61 16 LS Contribution 388.31 15.07 5.85 5.85 Total: -1.00 -31.35 388.31 -11.11 -42.46 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -7.42 Total: 7.84 kcal Atomic # 6 Polarization: 13.27 SS G_CDS: -3.42 Total: 9.85 kcal Atomic # 7 Polarization: -74.34 SS G_CDS: -1.11 Total: -75.45 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.09 Total: -10.44 kcal Atomic # 14 Polarization: 24.99 SS G_CDS: -5.10 Total: 19.89 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.35 -11.11 -42.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674954900.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.799 kcal (2) G-P(sol) polarization free energy of solvation -31.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds