Wall clock time and date at job start Tue Mar 31 2020 17:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47369 * 2 1 4 4 C 1.53000 * 109.46634 * 119.99855 * 2 1 3 5 5 N 1.46505 * 109.46814 * 175.00085 * 4 2 1 6 6 C 1.34771 * 119.99954 * 180.02562 * 5 4 2 7 7 O 1.21483 * 120.00186 * 359.97438 * 6 5 4 8 8 C 1.48462 * 120.00203 * 179.97438 * 6 5 4 9 9 C 1.39504 * 120.50947 * 180.02562 * 8 6 5 10 10 C 1.38780 * 118.43012 * 179.97438 * 9 8 6 11 11 N 1.32136 * 119.24216 * 359.97438 * 10 9 8 12 12 C 1.32568 * 120.95816 * 0.02562 * 11 10 9 13 13 N 1.38437 * 119.13590 * 180.02562 * 12 11 10 14 14 C 1.48536 * 110.99674 * 242.60228 * 13 12 11 15 15 C 1.54939 * 103.22680 * 159.71941 * 14 13 12 16 16 C 1.54595 * 102.91867 * 322.58563 * 15 14 13 17 17 C 1.47896 * 110.99923 * 359.97438 * 13 12 11 18 18 N 1.32287 * 121.72482 * 359.73857 * 12 11 10 19 19 N 1.46502 * 109.47248 * 239.99970 * 2 1 3 20 20 C 1.46503 * 119.99982 * 300.00135 * 19 2 1 21 21 C 1.36934 * 120.00322 * 120.00411 * 19 2 1 22 22 H 1.08000 * 119.99885 * 38.94794 * 21 19 2 23 23 C 1.38813 * 120.00136 * 218.95338 * 21 19 2 24 24 N 1.31622 * 120.00068 * 26.48116 * 23 21 19 25 25 Si 1.86797 * 120.00021 * 206.20836 * 23 21 19 26 26 H 1.48498 * 109.47189 * 89.99831 * 25 23 21 27 27 H 1.48501 * 109.47137 * 209.99695 * 25 23 21 28 28 H 1.48506 * 109.47066 * 329.99460 * 25 23 21 29 29 H 1.08994 * 109.47600 * 300.00315 * 1 2 3 30 30 H 1.09010 * 109.46620 * 60.00309 * 1 2 3 31 31 H 1.09003 * 109.47174 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47296 * 294.99603 * 4 2 1 33 33 H 1.09005 * 109.47283 * 55.00461 * 4 2 1 34 34 H 0.97000 * 119.99712 * 0.02562 * 5 4 2 35 35 H 1.08007 * 120.78443 * 0.02562 * 9 8 6 36 36 H 1.08000 * 120.37566 * 179.97438 * 10 9 8 37 37 H 1.08996 * 110.66688 * 278.15703 * 14 13 12 38 38 H 1.08998 * 110.66807 * 41.28503 * 14 13 12 39 39 H 1.09000 * 110.72299 * 204.22409 * 15 14 13 40 40 H 1.09003 * 110.87247 * 81.01094 * 15 14 13 41 41 H 1.09000 * 110.30877 * 263.03508 * 16 15 14 42 42 H 1.09000 * 110.30632 * 140.87400 * 16 15 14 43 43 H 1.09005 * 109.92113 * 333.51002 * 17 13 12 44 44 H 1.08996 * 109.91961 * 94.80665 * 17 13 12 45 45 H 1.09006 * 109.47148 * 275.29411 * 20 19 2 46 46 H 1.08999 * 109.46860 * 35.28925 * 20 19 2 47 47 H 1.08996 * 109.47041 * 155.29256 * 20 19 2 48 48 H 0.96996 * 119.99821 * 5.07656 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1907 6 6 4.1729 -1.4291 2.1908 7 8 3.5688 -1.8849 3.1411 8 6 5.6524 -1.5362 2.1312 9 6 6.3595 -2.1584 3.1602 10 6 7.7416 -2.2350 3.0600 11 7 8.3414 -1.7208 2.0009 12 6 7.6425 -1.1353 1.0385 13 7 8.3096 -0.6097 -0.0547 14 6 8.1125 0.8599 -0.1423 15 6 9.2928 1.3234 -1.0327 16 6 10.4516 0.4086 -0.5743 17 6 9.7694 -0.8138 0.0668 18 7 6.3238 -1.0452 1.0928 19 7 2.0184 -0.6906 -1.1962 20 6 1.6645 -2.0932 -1.4280 21 6 2.8057 -0.0252 -2.0975 22 1 3.5577 0.6675 -1.7496 23 6 2.6372 -0.2409 -3.4584 24 7 1.4688 -0.6295 -3.9235 25 14 4.0666 0.0276 -4.6306 26 1 4.8309 -1.2371 -4.7772 27 1 3.5470 0.4485 -5.9566 28 1 4.9582 1.0851 -4.0900 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 1.7516 -0.1583 2.1369 33 1 1.6053 -1.7198 1.2952 34 1 3.9824 -0.4621 0.4320 35 1 5.8435 -2.5716 4.0144 36 1 8.3202 -2.7095 3.8387 37 1 7.1588 1.0926 -0.6159 38 1 8.1739 1.3159 0.8458 39 1 9.5302 2.3704 -0.8442 40 1 9.0695 1.1639 -2.0876 41 1 11.0724 0.9231 0.1591 42 1 11.0522 0.1012 -1.4304 43 1 10.0481 -0.8856 1.1182 44 1 10.0626 -1.7214 -0.4607 45 1 2.3625 -2.7373 -0.8931 46 1 0.6521 -2.2767 -1.0682 47 1 1.7155 -2.3092 -2.4951 48 1 0.7066 -0.6941 -3.3270 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674954900.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:50 Heat of formation + Delta-G solvation = 37.308393 kcal Electronic energy + Delta-G solvation = -29577.455897 eV Core-core repulsion = 25668.057300 eV Total energy + Delta-G solvation = -3909.398597 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.55939 -40.81108 -39.51050 -38.56924 -35.75826 -35.07217 -34.11407 -33.70512 -31.19934 -30.89406 -30.02711 -28.09035 -27.96413 -25.95763 -25.03230 -24.67390 -22.82810 -22.09894 -21.43594 -21.14683 -19.54754 -19.15799 -18.93904 -17.56114 -17.17641 -17.03551 -16.78697 -16.57270 -16.38875 -15.80831 -15.72140 -15.55993 -15.39752 -14.91770 -14.86626 -14.51751 -14.11328 -13.92846 -13.80860 -13.56731 -13.30905 -13.06772 -12.90217 -12.84267 -12.49054 -12.48087 -12.44564 -12.22114 -12.06655 -11.99931 -11.90819 -11.83240 -11.62115 -11.43661 -11.34241 -11.21299 -10.44255 -10.40072 -10.14413 -9.55536 -8.85970 -8.14967 -5.50988 -0.65362 -0.13758 1.55553 1.59031 1.64967 1.82401 1.88484 2.11789 2.62251 2.64011 2.88820 3.23787 3.35256 3.49252 3.55637 3.64609 3.78166 3.89109 3.91677 4.04732 4.14235 4.25723 4.26184 4.46823 4.47988 4.53071 4.55928 4.65115 4.69539 4.72047 4.84047 4.89669 4.90930 4.94378 4.96634 5.09534 5.11640 5.15215 5.17423 5.22823 5.27784 5.42006 5.52543 5.53164 5.98157 6.01468 6.38395 6.44504 6.85182 6.98419 7.12460 7.75911 8.23765 8.99864 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.009056 B = 0.004750 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3091.006251 B = 5893.814594 C = 8382.541121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.153 3.847 3 H 0.065 0.935 4 C 0.115 3.885 5 N -0.684 5.684 6 C 0.561 3.439 7 O -0.560 6.560 8 C 0.136 3.864 9 C -0.196 4.196 10 C 0.185 3.815 11 N -0.540 5.540 12 C 0.473 3.527 13 N -0.465 5.465 14 C 0.051 3.949 15 C -0.120 4.120 16 C -0.123 4.123 17 C 0.038 3.962 18 N -0.524 5.524 19 N -0.600 5.600 20 C 0.131 3.869 21 C -0.351 4.351 22 H 0.045 0.955 23 C -0.061 4.061 24 N -0.929 5.929 25 Si 1.105 2.895 26 H -0.293 1.293 27 H -0.295 1.295 28 H -0.269 1.269 29 H 0.079 0.921 30 H 0.039 0.961 31 H 0.050 0.950 32 H 0.081 0.919 33 H 0.055 0.945 34 H 0.415 0.585 35 H 0.176 0.824 36 H 0.227 0.773 37 H 0.077 0.923 38 H 0.054 0.946 39 H 0.100 0.900 40 H 0.075 0.925 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.082 0.918 45 H -0.004 1.004 46 H 0.036 0.964 47 H 0.035 0.965 48 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.702 1.654 13.739 21.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.046 3.954 3 H 0.083 0.917 4 C -0.010 4.010 5 N -0.333 5.333 6 C 0.345 3.655 7 O -0.439 6.439 8 C -0.012 4.012 9 C -0.220 4.220 10 C 0.017 3.983 11 N -0.260 5.260 12 C 0.117 3.883 13 N -0.186 5.186 14 C -0.074 4.074 15 C -0.158 4.158 16 C -0.161 4.161 17 C -0.089 4.089 18 N -0.245 5.245 19 N -0.324 5.324 20 C -0.015 4.015 21 C -0.481 4.481 22 H 0.063 0.937 23 C -0.260 4.260 24 N -0.569 5.569 25 Si 0.931 3.069 26 H -0.220 1.220 27 H -0.221 1.221 28 H -0.193 1.193 29 H 0.098 0.902 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.073 0.927 34 H 0.252 0.748 35 H 0.194 0.806 36 H 0.244 0.756 37 H 0.096 0.904 38 H 0.072 0.928 39 H 0.119 0.881 40 H 0.094 0.906 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.103 0.897 44 H 0.100 0.900 45 H 0.014 0.986 46 H 0.054 0.946 47 H 0.054 0.946 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 16.970 1.398 11.483 20.537 hybrid contribution -1.161 -0.110 2.090 2.393 sum 15.808 1.289 13.573 20.876 Atomic orbital electron populations 1.22040 0.95676 1.01514 1.01519 1.20864 0.93670 0.95216 0.85611 0.91723 1.21931 0.78862 1.00891 0.99310 1.45901 1.08591 1.56100 1.22686 1.18098 0.85914 0.78702 0.82777 1.90723 1.68984 1.49828 1.34344 1.21500 0.94190 0.94467 0.91038 1.23048 0.96886 1.00979 1.01105 1.23980 0.91294 0.89346 0.93709 1.68333 1.40868 1.14195 1.02556 1.21310 0.86211 0.92508 0.88312 1.61311 1.11370 1.14819 1.31113 1.23271 1.01590 0.82452 1.00133 1.22558 0.92838 1.00772 0.99633 1.22449 0.97515 0.94394 1.01718 1.23049 0.82472 1.00421 1.02909 1.67906 1.09331 1.22110 1.25161 1.43973 1.58846 1.06661 1.22894 1.20849 0.96089 0.85253 0.99303 1.19943 1.12813 1.26621 0.88703 0.93734 1.27029 1.01978 0.98954 0.98021 1.70855 0.99931 1.48407 1.37723 0.82976 0.73082 0.76767 0.74046 1.22027 1.22124 1.19337 0.90226 0.94227 0.93104 0.90056 0.92697 0.74755 0.80639 0.75640 0.90421 0.92785 0.88120 0.90602 0.89208 0.89178 0.89688 0.89999 0.98635 0.94553 0.94644 0.93282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.15 9.16 71.98 0.66 -4.49 16 2 C 0.15 6.02 2.88 44.99 0.13 6.15 16 3 H 0.06 2.62 7.89 -2.39 -0.02 2.60 16 4 C 0.12 4.11 4.97 86.38 0.43 4.54 16 5 N -0.68 -25.69 5.38 -465.37 -2.50 -28.20 16 6 C 0.56 20.19 7.83 86.97 0.68 20.87 16 7 O -0.56 -21.36 16.42 -3.66 -0.06 -21.42 16 8 C 0.14 4.34 6.79 41.99 0.29 4.63 16 9 C -0.20 -4.58 9.71 22.70 0.22 -4.36 16 10 C 0.19 3.44 11.30 84.78 0.96 4.40 16 11 N -0.54 -13.08 8.12 -198.01 -1.61 -14.69 16 12 C 0.47 14.14 6.98 261.53 1.82 15.97 16 13 N -0.47 -12.93 5.36 -696.42 -3.73 -16.66 16 14 C 0.05 1.25 6.31 86.65 0.55 1.80 16 15 C -0.12 -2.10 7.06 31.80 0.22 -1.88 16 16 C -0.12 -1.79 6.93 31.46 0.22 -1.58 16 17 C 0.04 0.77 6.33 86.44 0.55 1.32 16 18 N -0.52 -17.82 9.48 -187.10 -1.77 -19.59 16 19 N -0.60 -28.68 1.93 -702.77 -1.36 -30.04 16 20 C 0.13 6.24 8.98 127.77 1.15 7.39 16 21 C -0.35 -18.83 9.00 84.03 0.76 -18.08 16 22 H 0.05 2.42 7.95 -2.91 -0.02 2.40 16 23 C -0.06 -3.39 4.73 84.86 0.40 -2.99 16 24 N -0.93 -55.46 12.35 21.65 0.27 -55.19 16 25 Si 1.11 51.28 29.99 68.60 2.06 53.34 16 26 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 27 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 28 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 29 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 31 H 0.05 1.74 6.69 -2.39 -0.02 1.73 16 32 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 33 H 0.05 2.05 7.84 -2.38 -0.02 2.03 16 34 H 0.42 17.07 7.28 -92.71 -0.67 16.39 16 35 H 0.18 3.44 7.73 -2.91 -0.02 3.42 16 36 H 0.23 1.74 8.06 -2.91 -0.02 1.72 16 37 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.05 1.26 7.99 -2.39 -0.02 1.24 16 39 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.08 1.69 6.46 -2.38 -0.02 1.67 16 44 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.00 -0.21 8.14 -2.38 -0.02 -0.23 16 46 H 0.04 1.57 6.45 -2.39 -0.02 1.56 16 47 H 0.03 1.91 5.83 -2.39 -0.01 1.90 16 48 H 0.26 15.56 7.40 -92.71 -0.69 14.87 16 Total: -1.00 -69.79 388.31 0.70 -69.09 By element: Atomic # 1 Polarization: 29.28 SS G_CDS: 0.38 Total: 29.66 kcal Atomic # 6 Polarization: 24.68 SS G_CDS: 9.03 Total: 33.70 kcal Atomic # 7 Polarization: -153.66 SS G_CDS: -10.71 Total: -164.37 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.06 Total: -21.42 kcal Atomic # 14 Polarization: 51.28 SS G_CDS: 2.06 Total: 53.34 kcal Total: -69.79 0.70 -69.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674954900.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.400 kcal (2) G-P(sol) polarization free energy of solvation -69.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds