Wall clock time and date at job start Tue Mar 31 2020 18:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 N 1.29111 * 126.00709 * 2 1 4 4 N 1.29018 * 110.25753 * 179.97438 * 3 2 1 5 5 C 1.32916 * 108.63816 * 359.97438 * 4 3 2 6 6 C 1.34395 * 126.00793 * 180.02562 * 2 1 3 7 7 C 1.50536 * 129.25209 * 0.11209 * 6 2 1 8 8 C 1.53442 * 108.32351 * 163.57814 * 7 6 2 9 9 H 1.08996 * 109.45371 * 289.70583 * 8 7 6 10 10 C 1.50701 * 109.45746 * 169.74227 * 8 7 6 11 11 O 1.21279 * 119.99651 * 359.97438 * 10 8 7 12 12 N 1.34770 * 119.99977 * 179.97438 * 10 8 7 13 13 C 1.46500 * 119.99970 * 179.97438 * 12 10 8 14 14 C 1.53004 * 109.47105 * 180.02562 * 13 12 10 15 15 N 1.46500 * 109.47105 * 179.97438 * 14 13 12 16 16 C 1.36936 * 119.99867 * 90.00353 * 15 14 13 17 17 H 1.07998 * 120.00383 * 217.37835 * 16 15 14 18 18 C 1.38816 * 119.99903 * 37.37013 * 16 15 14 19 19 N 1.31615 * 119.99908 * 20.93714 * 18 16 15 20 20 Si 1.86799 * 120.00277 * 200.93035 * 18 16 15 21 21 H 1.48502 * 109.47022 * 60.00359 * 20 18 16 22 22 H 1.48494 * 109.47231 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47230 * 300.00570 * 20 18 16 24 24 C 1.46497 * 120.00258 * 269.72638 * 15 14 13 25 25 C 1.53000 * 117.50005 * 194.39381 * 24 15 14 26 26 C 1.53002 * 117.49583 * 125.73606 * 24 15 14 27 27 C 1.53107 * 109.55548 * 49.71551 * 8 7 6 28 28 C 1.50595 * 129.16355 * 180.21535 * 5 4 3 29 29 H 1.09000 * 109.47203 * 269.97419 * 1 2 3 30 30 H 1.09001 * 109.47063 * 29.97524 * 1 2 3 31 31 H 1.09003 * 109.47331 * 149.97436 * 1 2 3 32 32 H 1.08993 * 109.69543 * 43.87180 * 7 6 2 33 33 H 1.08999 * 109.72711 * 283.29920 * 7 6 2 34 34 H 0.97006 * 120.00151 * 0.02562 * 12 10 8 35 35 H 1.09003 * 109.46993 * 60.00690 * 13 12 10 36 36 H 1.08991 * 109.47464 * 300.00416 * 13 12 10 37 37 H 1.09003 * 109.46658 * 60.00453 * 14 13 12 38 38 H 1.08991 * 109.47273 * 300.00500 * 14 13 12 39 39 H 0.97004 * 120.00573 * 174.87236 * 19 18 16 40 40 H 1.09000 * 115.54897 * 340.06928 * 24 15 14 41 41 H 1.08996 * 117.49795 * 0.02562 * 25 24 15 42 42 H 1.09000 * 117.49763 * 145.02230 * 25 24 15 43 43 H 1.09006 * 117.49674 * 214.98153 * 26 24 15 44 44 H 1.08999 * 117.50329 * 359.97438 * 26 24 15 45 45 H 1.08999 * 109.44973 * 49.96579 * 27 8 7 46 46 H 1.08998 * 109.45276 * 169.90368 * 27 8 7 47 47 H 1.08994 * 109.68964 * 283.08824 * 28 5 4 48 48 H 1.09002 * 109.69013 * 43.63090 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2240 1.0444 0.0000 4 7 3.4657 0.6942 0.0005 5 6 3.5327 -0.6332 0.0015 6 6 2.2550 -1.0872 -0.0005 7 6 1.8720 -2.5430 -0.0034 8 6 3.1012 -3.3643 -0.4146 9 1 3.3137 -3.1960 -1.4703 10 6 2.8264 -4.8282 -0.1851 11 8 1.7560 -5.1813 0.2627 12 7 3.7701 -5.7449 -0.4774 13 6 3.5032 -7.1679 -0.2538 14 6 4.7286 -7.9872 -0.6638 15 7 4.4619 -9.4102 -0.4396 16 6 3.9069 -10.1680 -1.4360 17 1 3.1868 -10.9355 -1.1934 18 6 4.2696 -9.9497 -2.7580 19 7 5.4021 -9.3402 -3.0376 20 14 3.1505 -10.5211 -4.1403 21 1 1.8298 -9.8536 -4.0158 22 1 3.7610 -10.1715 -5.4480 23 1 2.9712 -11.9927 -4.0558 24 6 4.7946 -10.0238 0.8484 25 6 4.8141 -11.5520 0.9188 26 6 3.6796 -10.7692 1.5847 27 6 4.3084 -2.9345 0.4233 28 6 4.7468 -1.5242 0.0068 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3634 -0.8898 -0.5142 32 1 1.0643 -2.7089 -0.7161 33 1 1.5486 -2.8403 0.9941 34 1 4.6263 -5.4624 -0.8353 35 1 2.6443 -7.4747 -0.8508 36 1 3.2907 -7.3362 0.8018 37 1 5.5872 -7.6804 -0.0665 38 1 4.9415 -7.8190 -1.7194 39 1 5.6917 -9.2535 -3.9593 40 1 5.5227 -9.4828 1.4527 41 1 4.5797 -12.1009 0.0068 42 1 5.5548 -12.0164 1.5698 43 1 3.6745 -10.7189 2.6736 44 1 2.6985 -10.8027 1.1111 45 1 4.0359 -2.9337 1.4787 46 1 5.1297 -3.6325 0.2612 47 1 5.1843 -1.5547 -0.9910 48 1 5.4795 -1.1423 0.7177 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691223258.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:33 Heat of formation + Delta-G solvation = 100.146743 kcal Electronic energy + Delta-G solvation = -28580.803631 eV Core-core repulsion = 24674.129909 eV Total energy + Delta-G solvation = -3906.673721 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.60646 -39.84835 -37.25847 -36.71000 -35.15682 -34.80124 -33.27882 -31.14190 -30.80162 -30.40564 -28.13811 -27.67126 -25.01893 -24.15086 -23.41857 -21.69182 -21.55043 -21.40014 -20.57008 -19.93502 -19.52398 -17.62627 -17.16943 -16.66307 -16.15895 -15.66741 -15.54631 -15.25849 -14.79175 -14.45516 -14.19404 -14.12529 -14.05944 -13.76424 -13.64046 -13.53774 -13.11252 -12.73293 -12.61834 -12.31062 -12.20978 -12.01914 -11.72742 -11.50608 -11.37722 -11.21292 -11.08110 -10.88520 -10.74630 -10.62517 -10.57034 -10.24111 -10.18279 -10.06713 -9.68483 -9.62060 -9.30759 -9.03790 -8.63731 -8.51728 -6.60418 -5.95291 -3.51773 1.34586 2.08155 2.34615 2.81694 3.27678 3.34438 3.36032 3.39149 3.94571 4.20522 4.33443 4.36888 4.54469 4.54949 4.61799 4.67922 4.89291 4.90307 4.95614 5.09127 5.20400 5.22224 5.23303 5.27417 5.35519 5.61540 5.65343 5.76638 5.80649 5.85357 5.92895 5.96205 6.05312 6.05451 6.13911 6.27453 6.33286 6.45544 6.46435 6.56386 6.77992 6.89010 6.99389 7.14117 7.43528 7.71833 7.82209 8.30774 8.38057 8.47002 9.03011 9.64719 10.20926 11.05788 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.016272 B = 0.002487 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.307241 B =11256.082615 C =11737.491376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.285 5.285 3 N -0.101 5.101 4 N -0.262 5.262 5 C -0.021 4.021 6 C -0.014 4.014 7 C -0.024 4.024 8 C -0.103 4.103 9 H 0.104 0.896 10 C 0.515 3.485 11 O -0.548 6.548 12 N -0.716 5.716 13 C 0.099 3.901 14 C 0.139 3.861 15 N -0.545 5.545 16 C -0.264 4.264 17 H 0.064 0.936 18 C 0.018 3.982 19 N -0.888 5.888 20 Si 0.900 3.100 21 H -0.281 1.281 22 H -0.289 1.289 23 H -0.280 1.280 24 C 0.126 3.874 25 C -0.196 4.196 26 C -0.227 4.227 27 C -0.111 4.111 28 C -0.031 4.031 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.398 0.602 35 H 0.065 0.935 36 H 0.053 0.947 37 H 0.031 0.969 38 H 0.103 0.897 39 H 0.259 0.741 40 H 0.088 0.912 41 H 0.099 0.901 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.085 0.915 45 H 0.075 0.925 46 H 0.086 0.914 47 H 0.087 0.913 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.256 14.902 5.768 16.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.076 5.076 3 N -0.079 5.079 4 N -0.127 5.127 5 C -0.162 4.162 6 C -0.148 4.148 7 C -0.064 4.064 8 C -0.125 4.125 9 H 0.122 0.878 10 C 0.299 3.701 11 O -0.426 6.426 12 N -0.366 5.366 13 C -0.027 4.027 14 C 0.012 3.988 15 N -0.261 5.261 16 C -0.393 4.393 17 H 0.081 0.919 18 C -0.183 4.183 19 N -0.530 5.530 20 Si 0.729 3.271 21 H -0.207 1.207 22 H -0.215 1.215 23 H -0.206 1.206 24 C 0.017 3.983 25 C -0.234 4.234 26 C -0.268 4.268 27 C -0.150 4.150 28 C -0.070 4.070 29 H 0.111 0.889 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.105 0.895 33 H 0.115 0.885 34 H 0.232 0.768 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.050 0.950 38 H 0.121 0.879 39 H 0.069 0.931 40 H 0.106 0.894 41 H 0.117 0.883 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.103 0.897 45 H 0.094 0.906 46 H 0.104 0.896 47 H 0.105 0.895 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.955 16.321 5.872 18.039 hybrid contribution -0.542 -1.331 -0.934 1.714 sum -5.498 14.990 4.937 16.712 Atomic orbital electron populations 1.22295 0.72711 1.06013 1.05183 1.46818 1.09207 1.04612 1.47000 1.78573 0.96136 1.11306 1.21872 1.74786 1.09608 1.11993 1.16270 1.21712 0.95048 0.91331 1.08063 1.21877 0.91251 0.92323 1.09328 1.19919 0.97763 0.84410 1.04288 1.21342 0.96191 0.92272 1.02727 0.87770 1.20269 0.84367 0.87343 0.78080 1.90689 1.24638 1.81899 1.45348 1.46091 1.17554 1.08030 1.64968 1.22363 1.02433 0.77408 1.00453 1.21090 0.91406 0.82665 1.03653 1.43207 1.70278 1.03359 1.09300 1.18910 1.18187 1.17005 0.85245 0.91871 1.25213 0.95603 0.99188 0.98288 1.69862 1.19104 1.45130 1.18858 0.86406 0.80691 0.78855 0.81120 1.20665 1.21461 1.20563 1.21143 0.96424 0.90957 0.89810 1.23083 1.00955 0.97007 1.02398 1.23379 0.95958 1.09855 0.97564 1.21667 0.96820 0.96170 1.00315 1.19964 0.92489 0.91201 1.03330 0.88903 0.87973 0.88121 0.89535 0.88453 0.76782 0.91673 0.92898 0.95011 0.87948 0.93131 0.89398 0.88284 0.90784 0.90892 0.89653 0.90618 0.89580 0.89471 0.89286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.43 11.27 59.84 0.67 1.11 16 2 N -0.28 -2.96 3.73 -64.01 -0.24 -3.20 16 3 N -0.10 -1.34 13.19 60.35 0.80 -0.54 16 4 N -0.26 -3.68 12.40 33.16 0.41 -3.27 16 5 C -0.02 -0.25 7.11 -83.12 -0.59 -0.84 16 6 C -0.01 -0.15 6.76 -82.50 -0.56 -0.70 16 7 C -0.02 -0.24 4.71 -27.73 -0.13 -0.37 16 8 C -0.10 -1.04 2.50 -91.49 -0.23 -1.27 16 9 H 0.10 0.94 8.12 -51.93 -0.42 0.52 16 10 C 0.51 7.28 7.15 -10.99 -0.08 7.20 16 11 O -0.55 -9.85 15.82 5.56 0.09 -9.76 16 12 N -0.72 -10.38 5.37 -60.30 -0.32 -10.71 16 13 C 0.10 1.84 6.00 -4.04 -0.02 1.81 16 14 C 0.14 2.86 5.45 -4.04 -0.02 2.84 16 15 N -0.55 -12.59 2.79 -165.66 -0.46 -13.05 16 16 C -0.26 -6.74 8.05 -15.06 -0.12 -6.86 16 17 H 0.06 1.65 7.21 -52.49 -0.38 1.27 16 18 C 0.02 0.46 4.97 -17.43 -0.09 0.37 16 19 N -0.89 -23.57 11.42 55.49 0.63 -22.94 16 20 Si 0.90 20.62 29.61 -169.99 -5.03 15.58 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 24 C 0.13 2.57 6.61 -67.93 -0.45 2.12 16 25 C -0.20 -3.79 9.81 -26.69 -0.26 -4.05 16 26 C -0.23 -4.24 10.09 -26.69 -0.27 -4.50 16 27 C -0.11 -0.95 5.17 -26.45 -0.14 -1.08 16 28 C -0.03 -0.27 6.30 -27.70 -0.17 -0.44 16 29 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.10 0.39 7.71 -51.93 -0.40 -0.01 16 32 H 0.09 0.80 7.87 -51.93 -0.41 0.39 16 33 H 0.10 1.02 7.78 -51.93 -0.40 0.61 16 34 H 0.40 4.74 7.80 -40.82 -0.32 4.42 16 35 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.03 0.60 8.03 -51.93 -0.42 0.18 16 38 H 0.10 2.38 5.48 -51.93 -0.28 2.09 16 39 H 0.26 6.68 8.32 -40.82 -0.34 6.34 16 40 H 0.09 1.64 8.09 -51.93 -0.42 1.22 16 41 H 0.10 2.13 6.95 -51.93 -0.36 1.77 16 42 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 43 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.08 1.72 8.00 -51.93 -0.42 1.30 16 45 H 0.08 0.68 8.12 -51.93 -0.42 0.26 16 46 H 0.09 0.63 7.30 -51.93 -0.38 0.25 16 47 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 389.52 15.07 5.87 5.87 Total: -1.00 -32.42 389.52 -8.26 -40.68 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -7.55 Total: 6.00 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -2.46 Total: -4.67 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: 0.82 Total: -53.70 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.09 Total: -9.76 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.03 Total: 15.58 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.42 -8.26 -40.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691223258.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.830 kcal (2) G-P(sol) polarization free energy of solvation -32.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds