Wall clock time and date at job start Tue Mar 31 2020 17:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.47068 * 2 1 4 4 C 1.53002 * 109.47169 * 120.00033 * 2 1 3 5 5 N 1.46496 * 109.47354 * 175.00269 * 4 2 1 6 6 C 1.34777 * 120.00385 * 179.97438 * 5 4 2 7 7 O 1.21557 * 119.99456 * 0.02562 * 6 5 4 8 8 C 1.47858 * 120.00384 * 179.97438 * 6 5 4 9 9 C 1.40063 * 120.09523 * 179.97438 * 8 6 5 10 10 C 1.38290 * 117.99164 * 179.72840 * 9 8 6 11 11 C 1.39595 * 118.03047 * 0.25704 * 10 9 8 12 12 N 1.38502 * 120.04898 * 179.97438 * 11 10 9 13 13 C 1.48527 * 111.00088 * 62.60127 * 12 11 10 14 14 C 1.54944 * 103.22571 * 159.72093 * 13 12 11 15 15 C 1.54595 * 102.92212 * 322.58180 * 14 13 12 16 16 C 1.47908 * 110.99801 * 179.97438 * 12 11 10 17 17 N 1.32861 * 119.90107 * 359.97438 * 11 10 9 18 18 N 1.28361 * 122.16336 * 0.02562 * 17 11 10 19 19 N 1.46497 * 109.47692 * 240.00130 * 2 1 3 20 20 C 1.46507 * 119.99936 * 300.00096 * 19 2 1 21 21 C 1.36938 * 120.00604 * 119.99687 * 19 2 1 22 22 H 1.08006 * 119.99328 * 23.10140 * 21 19 2 23 23 C 1.38809 * 120.00522 * 203.10253 * 21 19 2 24 24 N 1.31616 * 119.99619 * 12.99523 * 23 21 19 25 25 Si 1.86796 * 120.00217 * 192.99062 * 23 21 19 26 26 H 1.48502 * 109.46754 * 60.00078 * 25 23 21 27 27 H 1.48497 * 109.47206 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.47136 * 300.00105 * 25 23 21 29 29 H 1.09003 * 109.47301 * 299.99886 * 1 2 3 30 30 H 1.09001 * 109.46921 * 60.00380 * 1 2 3 31 31 H 1.09004 * 109.46750 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47255 * 55.00334 * 4 2 1 33 33 H 1.09001 * 109.46854 * 294.99978 * 4 2 1 34 34 H 0.97007 * 119.99960 * 359.97438 * 5 4 2 35 35 H 1.08003 * 121.00668 * 0.02562 * 9 8 6 36 36 H 1.08001 * 120.98315 * 180.23499 * 10 9 8 37 37 H 1.08998 * 110.66982 * 278.15768 * 13 12 11 38 38 H 1.09003 * 110.67132 * 41.28645 * 13 12 11 39 39 H 1.09003 * 110.72147 * 204.22687 * 14 13 12 40 40 H 1.09000 * 110.72392 * 80.94734 * 14 13 12 41 41 H 1.08996 * 110.31402 * 263.04279 * 15 14 13 42 42 H 1.09003 * 110.30363 * 140.86987 * 15 14 13 43 43 H 1.08994 * 109.91830 * 333.50870 * 16 12 11 44 44 H 1.09001 * 109.91509 * 94.80202 * 16 12 11 45 45 H 1.09004 * 109.46602 * 95.12158 * 20 19 2 46 46 H 1.08992 * 109.47505 * 215.12189 * 20 19 2 47 47 H 1.09005 * 109.46829 * 335.12719 * 20 19 2 48 48 H 0.97005 * 119.99911 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5000 -0.8264 1.1907 6 6 4.1731 -1.4282 2.1912 7 8 3.5685 -1.8843 3.1421 8 6 5.6466 -1.5348 2.1318 9 6 6.3481 -2.1594 3.1709 10 6 7.7248 -2.2401 3.0679 11 6 8.3315 -1.6894 1.9377 12 7 9.7076 -1.7463 1.7921 13 6 10.1766 -3.1533 1.7113 14 6 11.5683 -3.0252 1.0424 15 6 11.3545 -1.8910 0.0138 16 6 10.1338 -1.1064 0.5285 17 7 7.5868 -1.1105 1.0019 18 7 6.3089 -1.0347 1.0956 19 7 2.0184 -0.6905 -1.1961 20 6 1.6645 -2.0932 -1.4280 21 6 2.8057 -0.0251 -2.0975 22 1 3.3701 0.8412 -1.7853 23 6 2.8783 -0.4638 -3.4125 24 7 2.0110 -1.3467 -3.8604 25 14 4.2067 0.1990 -4.5462 26 1 5.5430 -0.1253 -3.9856 27 1 4.0680 -0.4226 -5.8877 28 1 4.0647 1.6723 -4.6669 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6054 -1.7198 1.2952 33 1 1.7516 -0.1583 2.1370 34 1 3.9824 -0.4627 0.4316 35 1 5.8291 -2.5700 4.0244 36 1 8.3131 -2.7147 3.8392 37 1 10.2669 -3.5866 2.7073 38 1 9.5052 -3.7477 1.0915 39 1 11.8424 -3.9536 0.5414 40 1 12.3242 -2.7437 1.7756 41 1 11.1478 -2.3080 -0.9718 42 1 12.2314 -1.2447 -0.0242 43 1 9.3267 -1.1539 -0.2024 44 1 10.4108 -0.0685 0.7129 45 1 0.7892 -2.1447 -2.0755 46 1 2.5002 -2.6046 -1.9055 47 1 1.4407 -2.5737 -0.4755 48 1 2.0615 -1.6530 -4.7795 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700482765.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:31 Heat of formation + Delta-G solvation = 43.251152 kcal Electronic energy + Delta-G solvation = -28980.745699 eV Core-core repulsion = 25071.604800 eV Total energy + Delta-G solvation = -3909.140899 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.52261 -40.76880 -39.64353 -38.40691 -35.55037 -34.69360 -34.24814 -33.68391 -31.34665 -30.80287 -30.08987 -28.02036 -27.51215 -25.98431 -25.36381 -24.83422 -22.66810 -22.05960 -21.66474 -21.06027 -19.30280 -18.83885 -18.62834 -18.38582 -17.22516 -17.02303 -16.85045 -16.51692 -16.05551 -15.85936 -15.58487 -15.37197 -15.00299 -14.74380 -14.55508 -14.40053 -14.18813 -13.90873 -13.72156 -13.54036 -13.29406 -13.05133 -12.91322 -12.88213 -12.65604 -12.53835 -12.33163 -12.29958 -12.16029 -12.12896 -11.80061 -11.63756 -11.51899 -11.51533 -11.37335 -11.20962 -10.82971 -10.61330 -10.06670 -9.64869 -8.77008 -7.79470 -5.27130 -0.66108 -0.30792 1.46206 1.49437 1.49751 1.54966 2.01535 2.29740 2.51863 2.54015 2.89841 3.27428 3.35534 3.50633 3.61160 3.65273 3.70165 3.85725 3.88098 4.02905 4.07486 4.24689 4.34622 4.37048 4.46667 4.57993 4.64983 4.66413 4.71453 4.76200 4.83364 4.85375 4.91834 4.93967 5.04144 5.04620 5.11121 5.20246 5.22987 5.31975 5.40713 5.50976 5.54115 5.68789 5.71748 5.73796 6.35518 6.46325 7.02021 7.18463 7.44560 7.89229 8.33460 9.23385 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010492 B = 0.003628 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2668.079088 B = 7715.973611 C = 9880.268853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.154 3.846 3 H 0.071 0.929 4 C 0.112 3.888 5 N -0.688 5.688 6 C 0.571 3.429 7 O -0.565 6.565 8 C -0.012 4.012 9 C -0.045 4.045 10 C -0.114 4.114 11 C 0.252 3.748 12 N -0.452 5.452 13 C 0.035 3.965 14 C -0.115 4.115 15 C -0.130 4.130 16 C 0.025 3.975 17 N -0.308 5.308 18 N -0.211 5.211 19 N -0.602 5.602 20 C 0.185 3.815 21 C -0.255 4.255 22 H 0.073 0.927 23 C -0.046 4.046 24 N -0.936 5.936 25 Si 0.957 3.043 26 H -0.284 1.284 27 H -0.297 1.297 28 H -0.275 1.275 29 H 0.079 0.921 30 H 0.041 0.959 31 H 0.046 0.954 32 H 0.057 0.943 33 H 0.084 0.916 34 H 0.414 0.586 35 H 0.184 0.816 36 H 0.200 0.800 37 H 0.121 0.879 38 H 0.047 0.953 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.070 0.930 42 H 0.091 0.909 43 H 0.058 0.942 44 H 0.084 0.916 45 H 0.006 0.994 46 H 0.007 0.993 47 H 0.022 0.978 48 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.557 -3.804 15.715 23.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.047 3.953 3 H 0.090 0.910 4 C -0.013 4.013 5 N -0.337 5.337 6 C 0.355 3.645 7 O -0.444 6.444 8 C -0.162 4.162 9 C -0.073 4.073 10 C -0.145 4.145 11 C 0.014 3.986 12 N -0.170 5.170 13 C -0.089 4.089 14 C -0.153 4.153 15 C -0.168 4.168 16 C -0.102 4.102 17 N -0.156 5.156 18 N -0.056 5.056 19 N -0.326 5.326 20 C 0.040 3.960 21 C -0.385 4.385 22 H 0.091 0.909 23 C -0.242 4.242 24 N -0.583 5.583 25 Si 0.786 3.214 26 H -0.211 1.211 27 H -0.224 1.224 28 H -0.200 1.200 29 H 0.098 0.902 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.251 0.749 35 H 0.201 0.799 36 H 0.218 0.782 37 H 0.139 0.861 38 H 0.066 0.934 39 H 0.114 0.886 40 H 0.112 0.888 41 H 0.089 0.911 42 H 0.109 0.891 43 H 0.076 0.924 44 H 0.102 0.898 45 H 0.024 0.976 46 H 0.026 0.974 47 H 0.040 0.960 48 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 17.294 -3.127 15.186 23.227 hybrid contribution 0.117 -0.449 -0.961 1.067 sum 17.412 -3.577 14.225 22.766 Atomic orbital electron populations 1.22052 0.95496 1.01479 1.01534 1.20819 0.93970 0.95449 0.85055 0.91047 1.21971 0.78718 1.01193 0.99419 1.45905 1.08731 1.56445 1.22620 1.17702 0.85539 0.78512 0.82751 1.90731 1.69131 1.50201 1.34371 1.22750 0.95889 1.01904 0.95667 1.22532 0.94260 0.92469 0.98074 1.22311 0.94248 0.99816 0.98081 1.22104 0.92288 0.92302 0.91877 1.61836 1.03737 1.16224 1.35253 1.23614 0.96926 0.84662 1.03696 1.22546 0.95367 0.99249 0.98111 1.22455 0.97223 0.97833 0.99324 1.23009 0.98306 0.99803 0.89112 1.73308 0.99171 1.19212 1.23940 1.73104 1.01809 1.11200 1.19522 1.44088 1.58321 1.07944 1.22220 1.20376 0.97316 0.83960 0.94352 1.19467 1.18352 1.11189 0.89527 0.90947 1.25629 1.00116 1.00336 0.98075 1.70214 1.36795 1.36016 1.15267 0.85487 0.79754 0.78167 0.77946 1.21060 1.22381 1.20037 0.90180 0.93998 0.93471 0.92464 0.89776 0.74871 0.79851 0.78246 0.86097 0.93402 0.88628 0.88792 0.91135 0.89060 0.92384 0.89802 0.97579 0.97431 0.95975 0.94555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.00 9.19 71.98 0.66 -4.34 16 2 C 0.15 5.96 2.87 44.99 0.13 6.09 16 3 H 0.07 2.74 7.87 -2.38 -0.02 2.72 16 4 C 0.11 3.93 4.93 86.38 0.43 4.36 16 5 N -0.69 -25.71 5.38 -465.96 -2.51 -28.21 16 6 C 0.57 20.43 7.80 86.79 0.68 21.11 16 7 O -0.56 -21.26 16.38 -3.90 -0.06 -21.32 16 8 C -0.01 -0.39 6.83 42.00 0.29 -0.11 16 9 C -0.04 -1.03 9.71 22.73 0.22 -0.81 16 10 C -0.11 -2.12 9.57 22.61 0.22 -1.90 16 11 C 0.25 6.10 6.27 133.21 0.84 6.93 16 12 N -0.45 -8.59 5.29 -689.02 -3.65 -12.24 16 13 C 0.04 0.45 6.06 86.65 0.53 0.97 16 14 C -0.11 -1.08 7.06 31.80 0.22 -0.86 16 15 C -0.13 -1.74 6.93 31.46 0.22 -1.53 16 16 C 0.02 0.50 6.35 86.44 0.55 1.05 16 17 N -0.31 -9.98 9.32 -55.17 -0.51 -10.49 16 18 N -0.21 -7.54 10.73 -48.51 -0.52 -8.06 16 19 N -0.60 -29.17 2.28 -702.76 -1.61 -30.78 16 20 C 0.19 9.27 8.00 127.77 1.02 10.29 16 21 C -0.26 -13.73 9.31 84.03 0.78 -12.94 16 22 H 0.07 3.78 7.82 -2.91 -0.02 3.75 16 23 C -0.05 -2.60 5.10 84.86 0.43 -2.17 16 24 N -0.94 -55.77 10.71 21.65 0.23 -55.54 16 25 Si 0.96 46.14 29.57 68.60 2.03 48.16 16 26 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 27 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 28 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 29 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.05 1.63 7.67 -2.39 -0.02 1.61 16 32 H 0.06 2.10 6.86 -2.39 -0.02 2.09 16 33 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 34 H 0.41 16.91 7.24 -92.70 -0.67 16.24 16 35 H 0.18 3.40 7.71 -2.91 -0.02 3.38 16 36 H 0.20 1.83 8.06 -2.91 -0.02 1.81 16 37 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.05 0.74 7.99 -2.39 -0.02 0.72 16 39 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.06 1.54 6.50 -2.39 -0.02 1.52 16 44 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.01 0.33 7.34 -2.38 -0.02 0.31 16 46 H 0.01 0.39 7.35 -2.39 -0.02 0.37 16 47 H 0.02 0.97 6.53 -2.38 -0.02 0.96 16 48 H 0.25 14.38 8.31 -92.70 -0.77 13.61 16 Total: -1.00 -70.91 387.53 0.91 -70.00 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: 0.30 Total: 22.34 kcal Atomic # 6 Polarization: 18.93 SS G_CDS: 7.21 Total: 26.14 kcal Atomic # 7 Polarization: -136.76 SS G_CDS: -8.56 Total: -145.32 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: -0.06 Total: -21.32 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.16 kcal Total: -70.91 0.91 -70.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700482765.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.248 kcal (2) G-P(sol) polarization free energy of solvation -70.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds