Wall clock time and date at job start Tue Mar 31 2020 18:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.29106 * 126.01120 * 2 1 4 4 N 1.29022 * 110.26062 * 179.97438 * 3 2 1 5 5 C 1.32906 * 108.63323 * 359.97438 * 4 3 2 6 6 C 1.34401 * 126.00574 * 179.97438 * 2 1 3 7 7 C 1.50528 * 129.25715 * 0.22831 * 6 2 1 8 8 C 1.53434 * 108.32541 * 163.47040 * 7 6 2 9 9 H 1.09008 * 109.45860 * 289.72278 * 8 7 6 10 10 C 1.50705 * 109.45765 * 169.76202 * 8 7 6 11 11 O 1.21281 * 119.99504 * 359.96284 * 10 8 7 12 12 N 1.34773 * 120.00108 * 179.97438 * 10 8 7 13 13 C 1.46499 * 120.00058 * 179.97438 * 12 10 8 14 14 C 1.53785 * 113.61514 * 204.99951 * 13 12 10 15 15 C 1.53781 * 87.08078 * 220.01923 * 14 13 12 16 16 C 1.52997 * 113.61399 * 139.97945 * 15 14 13 17 17 N 1.46506 * 109.47289 * 174.99933 * 16 15 14 18 18 C 1.36930 * 120.00258 * 180.02562 * 17 16 15 19 19 H 1.08004 * 119.99823 * 0.02562 * 18 17 16 20 20 C 1.38815 * 120.00439 * 179.97438 * 18 17 16 21 21 N 1.31618 * 119.99225 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00268 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47312 * 60.00457 * 22 20 18 24 24 H 1.48506 * 109.46866 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47236 * 300.00219 * 22 20 18 26 26 C 1.53785 * 87.08326 * 25.43419 * 15 14 13 27 27 C 1.53106 * 109.53775 * 49.74330 * 8 7 6 28 28 C 1.50596 * 129.16039 * 180.14727 * 5 4 3 29 29 H 1.09000 * 109.47365 * 89.97049 * 1 2 3 30 30 H 1.08999 * 109.47457 * 209.97634 * 1 2 3 31 31 H 1.09001 * 109.46870 * 329.97750 * 1 2 3 32 32 H 1.09006 * 109.67751 * 43.76896 * 7 6 2 33 33 H 1.08995 * 109.70344 * 283.18675 * 7 6 2 34 34 H 0.97002 * 119.99934 * 359.97438 * 12 10 8 35 35 H 1.09001 * 112.90754 * 336.24943 * 13 12 10 36 36 H 1.08996 * 113.61664 * 105.46904 * 14 13 12 37 37 H 1.09002 * 113.61047 * 334.56617 * 14 13 12 38 38 H 1.08998 * 113.61220 * 270.79989 * 15 14 13 39 39 H 1.09001 * 109.47289 * 54.99804 * 16 15 14 40 40 H 1.09004 * 109.47261 * 295.00060 * 16 15 14 41 41 H 0.97001 * 119.99251 * 0.02562 * 17 16 15 42 42 H 0.97000 * 119.99950 * 179.97438 * 21 20 18 43 43 H 1.08995 * 113.61917 * 89.11388 * 26 15 14 44 44 H 1.08995 * 113.61487 * 220.02311 * 26 15 14 45 45 H 1.08999 * 109.45436 * 49.95807 * 27 8 7 46 46 H 1.09006 * 109.45074 * 169.91473 * 27 8 7 47 47 H 1.08997 * 109.69578 * 43.76680 * 28 5 4 48 48 H 1.09003 * 109.72062 * 283.20508 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2240 1.0443 0.0000 4 7 3.4658 0.6941 0.0005 5 6 3.5327 -0.6333 0.0015 6 6 2.2551 -1.0872 0.0005 7 6 1.8722 -2.5430 -0.0035 8 6 3.1012 -3.3640 -0.4155 9 1 3.3138 -3.1946 -1.4711 10 6 2.8263 -4.8281 -0.1875 11 8 1.7560 -5.1816 0.2601 12 7 3.7699 -5.7446 -0.4808 13 6 3.5029 -7.1678 -0.2587 14 6 4.7738 -8.0070 -0.0451 15 6 4.1064 -9.0931 -0.9053 16 6 5.0691 -9.7883 -1.8700 17 7 4.3713 -10.8797 -2.5543 18 6 5.0364 -11.6493 -3.4710 19 1 6.0757 -11.4520 -3.6892 20 6 4.3755 -12.6838 -4.1191 21 7 3.1092 -12.9244 -3.8527 22 14 5.2827 -13.7331 -5.3701 23 1 6.4358 -14.4000 -4.7136 24 1 4.3604 -14.7614 -5.9154 25 1 5.7728 -12.8720 -6.4761 26 6 3.2898 -7.9645 -1.5567 27 6 4.3081 -2.9350 0.4232 28 6 4.7467 -1.5243 0.0054 29 1 -0.3634 0.0005 -1.0277 30 1 -0.3634 -0.8902 0.5134 31 1 -0.3633 0.8898 0.5142 32 1 1.0643 -2.7081 -0.7164 33 1 1.5491 -2.8407 0.9940 34 1 4.6259 -5.4618 -0.8390 35 1 2.7327 -7.3428 0.4925 36 1 4.9305 -8.3059 0.9913 37 1 5.6643 -7.5746 -0.5013 38 1 3.5024 -9.7952 -0.3307 39 1 5.9147 -10.1910 -1.3123 40 1 5.4287 -9.0690 -2.6059 41 1 3.4381 -11.0570 -2.3580 42 1 2.6471 -13.6470 -4.3058 43 1 3.7746 -7.5205 -2.4261 44 1 2.2485 -8.2291 -1.7406 45 1 4.0354 -2.9351 1.4785 46 1 5.1297 -3.6326 0.2604 47 1 5.4793 -1.1439 0.7171 48 1 5.1847 -1.5536 -0.9923 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733955509.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:12 Heat of formation + Delta-G solvation = 55.395743 kcal Electronic energy + Delta-G solvation = -27832.736918 eV Core-core repulsion = 23924.122648 eV Total energy + Delta-G solvation = -3908.614270 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.43851 -41.31682 -39.74108 -37.56100 -36.31061 -35.87633 -34.55241 -32.81841 -31.52799 -31.36027 -28.76326 -28.44097 -26.57086 -26.05786 -24.91228 -24.27203 -22.77539 -22.38278 -21.56366 -20.87642 -20.25049 -19.03752 -18.42786 -17.91747 -17.49127 -17.27836 -16.60258 -16.32427 -16.05581 -15.63180 -15.35764 -15.10949 -14.90600 -14.81907 -14.73413 -14.60659 -14.34033 -14.12141 -13.69399 -13.30654 -13.24284 -13.11709 -13.04011 -12.97024 -12.85290 -12.68038 -12.60465 -12.21882 -12.15129 -12.05309 -11.93626 -11.82248 -11.54923 -11.33360 -11.24039 -10.95774 -10.86195 -10.68686 -9.94292 -9.86680 -8.95850 -7.93036 -5.21399 0.52682 1.43021 1.47338 1.48229 1.51411 1.57528 1.64310 2.21303 2.58014 3.16715 3.39914 3.42637 3.64418 3.65311 3.72595 3.78163 3.78896 3.92652 3.95884 3.99258 4.14974 4.23620 4.28976 4.35650 4.44896 4.51521 4.56084 4.65393 4.67959 4.70695 4.87590 4.89935 4.91544 4.95883 5.01811 5.03866 5.06940 5.09911 5.20013 5.23414 5.29596 5.34090 5.47000 5.53550 5.60488 5.71532 6.29500 6.63709 7.30913 7.35245 7.44277 8.14327 8.35663 9.30465 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.025572 B = 0.001774 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.667185 B =15783.148725 C =15961.429707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.278 5.278 3 N -0.131 5.131 4 N -0.300 5.300 5 C -0.033 4.033 6 C -0.015 4.015 7 C -0.020 4.020 8 C -0.095 4.095 9 H 0.123 0.877 10 C 0.522 3.478 11 O -0.582 6.582 12 N -0.702 5.702 13 C 0.132 3.868 14 C -0.114 4.114 15 C -0.117 4.117 16 C 0.163 3.837 17 N -0.747 5.747 18 C -0.245 4.245 19 H 0.077 0.923 20 C -0.080 4.080 21 N -0.971 5.971 22 Si 0.975 3.025 23 H -0.277 1.277 24 H -0.297 1.297 25 H -0.277 1.277 26 C -0.141 4.141 27 C -0.103 4.103 28 C -0.028 4.028 29 H 0.109 0.891 30 H 0.119 0.881 31 H 0.113 0.887 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.418 0.582 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.021 0.979 40 H 0.025 0.975 41 H 0.372 0.628 42 H 0.250 0.750 43 H 0.086 0.914 44 H 0.047 0.953 45 H 0.071 0.929 46 H 0.109 0.891 47 H 0.095 0.905 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.308 26.462 10.948 28.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.071 5.071 3 N -0.109 5.109 4 N -0.164 5.164 5 C -0.175 4.175 6 C -0.150 4.150 7 C -0.059 4.059 8 C -0.117 4.117 9 H 0.141 0.859 10 C 0.310 3.690 11 O -0.462 6.462 12 N -0.353 5.353 13 C 0.027 3.973 14 C -0.152 4.152 15 C -0.136 4.136 16 C 0.037 3.963 17 N -0.390 5.390 18 C -0.377 4.377 19 H 0.095 0.905 20 C -0.272 4.272 21 N -0.622 5.622 22 Si 0.803 3.197 23 H -0.203 1.203 24 H -0.223 1.223 25 H -0.203 1.203 26 C -0.180 4.180 27 C -0.141 4.141 28 C -0.067 4.067 29 H 0.127 0.873 30 H 0.138 0.862 31 H 0.132 0.868 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.256 0.744 35 H 0.118 0.882 36 H 0.105 0.895 37 H 0.126 0.874 38 H 0.097 0.903 39 H 0.039 0.961 40 H 0.043 0.957 41 H 0.203 0.797 42 H 0.059 0.941 43 H 0.104 0.896 44 H 0.066 0.934 45 H 0.090 0.910 46 H 0.128 0.872 47 H 0.113 0.887 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.918 27.799 11.174 29.975 hybrid contribution -0.330 -1.781 -0.943 2.042 sum -1.247 26.018 10.231 27.985 Atomic orbital electron populations 1.22728 0.70258 1.07608 1.06786 1.47209 1.10643 1.04013 1.45212 1.78511 0.96461 1.12509 1.23376 1.74746 1.10289 1.13572 1.17750 1.22317 0.96625 0.90952 1.07560 1.22052 0.91104 0.92745 1.09142 1.19898 0.98144 0.83653 1.04245 1.21323 0.96815 0.89313 1.04201 0.85883 1.20814 0.83451 0.88618 0.76157 1.90708 1.26191 1.82638 1.46653 1.45880 1.18575 1.05693 1.65140 1.22309 0.98908 0.79037 0.97060 1.23235 0.97008 0.94071 1.00897 1.22451 0.98002 0.95627 0.97527 1.20803 0.93909 0.88868 0.92683 1.42618 1.11837 1.36235 1.48272 1.19642 0.95194 1.08556 1.14300 0.90505 1.25604 0.97008 1.01343 1.03230 1.69820 1.10784 1.34099 1.47501 0.85194 0.77260 0.78177 0.79034 1.20303 1.22345 1.20315 1.23448 0.99832 0.96500 0.98179 1.21669 0.96587 0.96228 0.99646 1.20093 0.91497 0.90744 1.04400 0.87251 0.86248 0.86825 0.88897 0.88924 0.74418 0.88178 0.89465 0.87369 0.90340 0.96109 0.95672 0.79657 0.94106 0.89553 0.93447 0.91050 0.87241 0.88674 0.88024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.42 11.27 127.77 1.44 1.86 16 2 N -0.28 -4.59 3.73 -356.43 -1.33 -5.91 16 3 N -0.13 -3.06 13.19 37.02 0.49 -2.57 16 4 N -0.30 -7.38 12.40 -48.99 -0.61 -7.99 16 5 C -0.03 -0.60 7.11 41.75 0.30 -0.30 16 6 C -0.02 -0.24 6.76 41.50 0.28 0.04 16 7 C -0.02 -0.25 4.68 29.94 0.14 -0.11 16 8 C -0.09 -1.01 2.50 -11.36 -0.03 -1.03 16 9 H 0.12 0.97 8.11 -2.38 -0.02 0.95 16 10 C 0.52 8.83 7.15 87.66 0.63 9.46 16 11 O -0.58 -15.03 15.42 -3.03 -0.05 -15.08 16 12 N -0.70 -10.13 5.17 -440.02 -2.28 -12.40 16 13 C 0.13 2.68 4.24 45.52 0.19 2.87 16 14 C -0.11 -2.12 7.39 31.12 0.23 -1.89 16 15 C -0.12 -3.36 3.75 -10.27 -0.04 -3.40 16 16 C 0.16 6.10 6.10 86.38 0.53 6.63 16 17 N -0.75 -37.64 5.60 -343.44 -1.92 -39.57 16 18 C -0.25 -13.62 9.99 84.04 0.84 -12.78 16 19 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 20 C -0.08 -4.59 5.50 84.86 0.47 -4.13 16 21 N -0.97 -59.81 13.06 21.65 0.28 -59.52 16 22 Si 0.97 45.91 29.55 68.60 2.03 47.94 16 23 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 24 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16 25 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 26 C -0.14 -3.76 7.43 31.12 0.23 -3.53 16 27 C -0.10 -0.77 5.18 30.80 0.16 -0.61 16 28 C -0.03 -0.29 6.30 29.99 0.19 -0.10 16 29 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.12 0.32 7.96 -2.39 -0.02 0.30 16 31 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 33 H 0.09 1.29 7.78 -2.39 -0.02 1.27 16 34 H 0.42 3.30 8.06 -92.71 -0.75 2.56 16 35 H 0.10 2.38 7.47 -2.39 -0.02 2.37 16 36 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.11 1.58 8.08 -2.39 -0.02 1.56 16 38 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 39 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.03 0.92 7.84 -2.38 -0.02 0.90 16 41 H 0.37 20.18 7.67 -92.71 -0.71 19.47 16 42 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 43 H 0.09 2.26 7.90 -2.39 -0.02 2.24 16 44 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.07 0.66 8.12 -2.39 -0.02 0.64 16 46 H 0.11 0.30 7.30 -2.38 -0.02 0.28 16 47 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 48 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -80.49 390.51 1.69 -78.79 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: -0.47 Total: 23.32 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: 5.55 Total: -7.00 kcal Atomic # 7 Polarization: -122.60 SS G_CDS: -5.37 Total: -127.97 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -0.05 Total: -15.08 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -80.49 1.69 -78.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733955509.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.187 kcal (2) G-P(sol) polarization free energy of solvation -80.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds