Wall clock time and date at job start Tue Mar 31 2020 17:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09004 * 109.46515 * 2 1 4 4 C 1.52991 * 109.47628 * 239.99338 * 2 1 3 5 5 N 1.46497 * 109.47372 * 185.00110 * 4 2 1 6 6 C 1.36941 * 119.99870 * 180.02562 * 5 4 2 7 7 H 1.07992 * 120.00183 * 0.02562 * 6 5 4 8 8 C 1.38820 * 119.99483 * 179.97438 * 6 5 4 9 9 N 1.31619 * 119.99495 * 180.02562 * 8 6 5 10 10 Si 1.86793 * 120.00294 * 0.02562 * 8 6 5 11 11 H 1.48493 * 109.47315 * 89.99587 * 10 8 6 12 12 H 1.48496 * 109.47049 * 210.00152 * 10 8 6 13 13 H 1.48506 * 109.47134 * 329.99859 * 10 8 6 14 14 N 1.46498 * 109.46895 * 119.99137 * 2 1 3 15 15 C 1.46510 * 120.00013 * 60.00422 * 14 2 1 16 16 C 1.34779 * 120.00212 * 240.00384 * 14 2 1 17 17 O 1.21274 * 119.99924 * 4.95913 * 16 14 2 18 18 C 1.50706 * 119.99875 * 184.95887 * 16 14 2 19 19 H 1.09002 * 109.87929 * 348.33183 * 18 16 14 20 20 C 1.54319 * 109.88586 * 109.53315 * 18 16 14 21 21 C 1.55139 * 103.01656 * 141.68812 * 20 18 16 22 22 C 1.54897 * 101.65401 * 324.34434 * 21 20 18 23 23 N 1.47440 * 109.88908 * 227.30100 * 18 16 14 24 24 C 1.38412 * 110.99958 * 3.85229 * 23 18 16 25 25 N 1.32492 * 119.21532 * 73.51437 * 24 23 18 26 26 C 1.32275 * 120.73990 * 179.97438 * 25 24 23 27 27 C 1.38605 * 119.19796 * 0.02562 * 26 25 24 28 28 C 1.38603 * 118.55561 * 359.97438 * 27 26 25 29 29 N 1.32273 * 119.20021 * 0.02562 * 28 27 26 30 30 H 1.08995 * 109.47097 * 300.00427 * 1 2 3 31 31 H 1.08997 * 109.46568 * 60.00993 * 1 2 3 32 32 H 1.09004 * 109.46515 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47121 * 305.00461 * 4 2 1 34 34 H 1.09005 * 109.46783 * 64.99677 * 4 2 1 35 35 H 0.97000 * 119.99753 * 359.97438 * 5 4 2 36 36 H 0.96996 * 119.99770 * 180.02562 * 9 8 6 37 37 H 1.08994 * 109.47127 * 264.51237 * 15 14 2 38 38 H 1.09000 * 109.46771 * 24.51179 * 15 14 2 39 39 H 1.08994 * 109.47042 * 144.50668 * 15 14 2 40 40 H 1.09003 * 110.70427 * 260.06698 * 20 18 16 41 41 H 1.08997 * 110.70580 * 23.12676 * 20 18 16 42 42 H 1.09000 * 110.99158 * 82.43942 * 21 20 18 43 43 H 1.09001 * 110.98957 * 206.21433 * 21 20 18 44 44 H 1.09003 * 110.37666 * 278.23940 * 22 21 20 45 45 H 1.09003 * 110.37606 * 155.89732 * 22 21 20 46 46 H 1.07999 * 120.40124 * 180.27258 * 26 25 24 47 47 H 1.07998 * 120.72169 * 179.97438 * 27 26 25 48 48 H 1.08007 * 120.40071 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0402 -0.7213 -1.2490 5 7 3.5002 -0.8264 -1.1903 6 6 4.1841 -1.4381 -2.2069 7 1 3.6472 -1.8426 -3.0521 8 6 5.5676 -1.5372 -2.1514 9 7 6.2250 -2.1246 -3.1287 10 14 6.4963 -0.8369 -0.6898 11 1 6.6278 -1.8798 0.3590 12 1 7.8470 -0.3994 -1.1251 13 1 5.7524 0.3255 -0.1414 14 7 2.0183 -0.6904 1.1963 15 6 1.6644 -2.0931 1.4283 16 6 2.7931 -0.0353 2.0835 17 8 3.0122 1.1487 1.9390 18 6 3.3873 -0.7742 3.2549 19 1 2.9278 -1.7586 3.3438 20 6 4.9121 -0.9178 3.0663 21 6 5.4625 -0.7153 4.5026 22 6 4.4881 0.3501 5.0637 23 7 3.1709 -0.0059 4.4945 24 6 2.4137 1.1267 4.2503 25 7 1.1162 0.9988 4.0144 26 6 0.3640 2.0608 3.7779 27 6 0.9490 3.3174 3.7785 28 6 2.3087 3.4151 4.0289 29 7 3.0035 2.3131 4.2580 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5137 -0.8901 32 1 -0.3632 -1.0277 -0.0005 33 1 1.6055 -1.7199 -1.2949 34 1 1.7518 -0.1585 -2.1369 35 1 3.9825 -0.4621 -0.4316 36 1 7.1916 -2.1942 -3.0898 37 1 0.7930 -2.1448 2.0808 38 1 1.4346 -2.5720 0.4765 39 1 2.5026 -2.6060 1.8999 40 1 5.1626 -1.9112 2.6941 41 1 5.2913 -0.1487 2.3934 42 1 5.4035 -1.6396 5.0772 43 1 6.4844 -0.3370 4.4794 44 1 4.7860 1.3464 4.7370 45 1 4.4571 0.3002 6.1522 46 1 -0.6939 1.9505 3.5906 47 1 0.3582 4.2011 3.5879 48 1 2.7951 4.3794 4.0369 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753697421.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:06 Heat of formation + Delta-G solvation = 77.634545 kcal Electronic energy + Delta-G solvation = -31445.114933 eV Core-core repulsion = 27537.465010 eV Total energy + Delta-G solvation = -3907.649923 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.71840 -39.88609 -38.26648 -36.37132 -34.22274 -33.62399 -33.04404 -32.13525 -30.67585 -29.78793 -29.20608 -26.78872 -25.96548 -24.59098 -24.08051 -22.98348 -22.01113 -21.27567 -20.49790 -19.12861 -17.97182 -17.59229 -17.43035 -17.19775 -16.04440 -15.98327 -15.39629 -15.09219 -14.76083 -14.60647 -14.40576 -14.06697 -13.71332 -13.60099 -13.36349 -13.09785 -12.86680 -12.81396 -12.53582 -12.39470 -12.26525 -12.17912 -12.04798 -11.82337 -11.65881 -11.32340 -11.08645 -10.96172 -10.83522 -10.70931 -10.70634 -10.57284 -10.14516 -10.03673 -9.69752 -9.62470 -9.13092 -8.92937 -8.51497 -8.30911 -7.25540 -5.79810 -3.14591 0.97282 1.22079 2.56892 3.07903 3.28972 3.31610 3.41954 3.42689 3.84513 4.20361 4.39250 4.50844 4.56734 4.62643 4.63115 4.84156 5.00925 5.06738 5.10974 5.15588 5.18195 5.27168 5.31746 5.39774 5.44776 5.52052 5.63822 5.69457 5.71944 5.77560 5.77796 5.81259 5.84338 5.90743 5.95003 6.00923 6.09914 6.20770 6.26101 6.37211 6.41800 6.56844 6.77525 6.80895 7.24717 7.51059 7.95827 8.20827 8.25070 8.39430 9.18422 9.91397 10.11841 11.38470 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.012544 B = 0.005389 C = 0.004433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.642626 B = 5194.324113 C = 6314.867628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.124 3.876 3 H 0.095 0.905 4 C 0.148 3.852 5 N -0.751 5.751 6 C -0.242 4.242 7 H 0.091 0.909 8 C 0.007 3.993 9 N -0.933 5.933 10 Si 0.874 3.126 11 H -0.281 1.281 12 H -0.290 1.290 13 H -0.276 1.276 14 N -0.585 5.585 15 C 0.077 3.923 16 C 0.512 3.488 17 O -0.539 6.539 18 C 0.067 3.933 19 H 0.117 0.883 20 C -0.135 4.135 21 C -0.124 4.124 22 C 0.039 3.961 23 N -0.447 5.447 24 C 0.505 3.495 25 N -0.520 5.520 26 C 0.168 3.832 27 C -0.255 4.255 28 C 0.175 3.825 29 N -0.527 5.527 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.031 0.969 34 H 0.037 0.963 35 H 0.361 0.639 36 H 0.259 0.741 37 H 0.058 0.942 38 H 0.083 0.917 39 H 0.068 0.932 40 H 0.091 0.909 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.093 0.907 45 H 0.086 0.914 46 H 0.162 0.838 47 H 0.141 0.859 48 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.576 5.881 17.906 22.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.021 3.979 3 H 0.113 0.887 4 C 0.020 3.980 5 N -0.397 5.397 6 C -0.372 4.372 7 H 0.108 0.892 8 C -0.188 4.188 9 N -0.581 5.581 10 Si 0.704 3.296 11 H -0.208 1.208 12 H -0.216 1.216 13 H -0.202 1.202 14 N -0.317 5.317 15 C -0.066 4.066 16 C 0.298 3.702 17 O -0.416 6.416 18 C -0.043 4.043 19 H 0.135 0.865 20 C -0.174 4.174 21 C -0.162 4.162 22 C -0.088 4.088 23 N -0.169 5.169 24 C 0.150 3.850 25 N -0.238 5.238 26 C 0.000 4.000 27 C -0.277 4.277 28 C 0.008 3.992 29 N -0.245 5.245 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.049 0.951 34 H 0.054 0.946 35 H 0.194 0.806 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.101 0.899 39 H 0.086 0.914 40 H 0.109 0.891 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.103 0.897 44 H 0.111 0.889 45 H 0.104 0.896 46 H 0.179 0.821 47 H 0.159 0.841 48 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -11.137 5.208 18.115 21.893 hybrid contribution 0.578 1.599 0.119 1.705 sum -10.558 6.807 18.234 22.142 Atomic orbital electron populations 1.22003 0.94628 1.02322 1.01979 1.21439 0.93906 0.98156 0.84427 0.88704 1.20995 0.85749 0.97463 0.93797 1.42636 1.01234 1.71160 1.24645 1.19049 0.89872 1.29101 0.99192 0.89164 1.24623 0.96130 1.00586 0.97507 1.69692 1.07301 1.48633 1.32456 0.86702 0.79944 0.79323 0.83638 1.20765 1.21645 1.20197 1.47677 1.49249 1.12557 1.22187 1.21820 1.00462 0.81422 1.02858 1.20672 0.78141 0.87541 0.83838 1.90721 1.60709 1.15282 1.74876 1.22703 0.97716 0.98435 0.85416 0.86514 1.22867 0.91618 1.04298 0.98588 1.22704 0.99229 0.99420 0.94824 1.23232 0.85109 1.00709 0.99712 1.60667 1.17000 1.15965 1.23305 1.20750 0.87759 0.88388 0.88085 1.67924 1.05565 1.34382 1.15881 1.22913 0.99641 0.87516 0.89893 1.22644 0.97890 1.00085 1.07131 1.22885 0.90864 0.96650 0.88849 1.68158 1.39493 0.99386 1.17422 0.92641 0.91424 0.92136 0.95122 0.94554 0.80594 0.93067 0.92377 0.89852 0.91357 0.89084 0.90157 0.90077 0.89724 0.88914 0.89578 0.82050 0.84131 0.82204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.19 37.16 0.34 -1.55 16 2 C 0.12 2.05 2.79 -67.93 -0.19 1.86 16 3 H 0.09 1.83 6.91 -51.93 -0.36 1.47 16 4 C 0.15 2.87 5.52 -4.05 -0.02 2.85 16 5 N -0.75 -18.30 5.24 -59.91 -0.31 -18.62 16 6 C -0.24 -6.93 10.48 -15.05 -0.16 -7.09 16 7 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 8 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 9 N -0.93 -29.54 13.97 55.49 0.78 -28.76 16 10 Si 0.87 22.78 27.74 -169.99 -4.71 18.07 16 11 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.29 -7.67 7.11 56.52 0.40 -7.27 16 13 H -0.28 -7.24 6.52 56.52 0.37 -6.87 16 14 N -0.59 -9.47 2.24 -173.93 -0.39 -9.86 16 15 C 0.08 1.02 8.93 59.85 0.53 1.55 16 16 C 0.51 9.03 4.54 -10.98 -0.05 8.98 16 17 O -0.54 -11.03 13.23 5.56 0.07 -10.96 16 18 C 0.07 1.03 3.33 -67.87 -0.23 0.81 16 19 H 0.12 1.58 5.70 -51.93 -0.30 1.28 16 20 C -0.13 -2.06 6.46 -24.91 -0.16 -2.22 16 21 C -0.12 -1.46 7.08 -24.60 -0.17 -1.64 16 22 C 0.04 0.51 6.50 -2.30 -0.01 0.50 16 23 N -0.45 -6.70 5.25 -165.99 -0.87 -7.58 16 24 C 0.51 8.07 4.32 -322.80 -1.39 6.68 16 25 N -0.52 -7.85 9.45 -13.93 -0.13 -7.98 16 26 C 0.17 2.04 11.30 -17.23 -0.19 1.84 16 27 C -0.25 -2.80 10.16 -39.31 -0.40 -3.20 16 28 C 0.18 2.23 11.27 -17.23 -0.19 2.04 16 29 N -0.53 -8.23 7.28 -13.93 -0.10 -8.33 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.69 7.67 -51.93 -0.40 0.29 16 33 H 0.03 0.57 6.86 -51.93 -0.36 0.22 16 34 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.36 9.05 4.93 -40.82 -0.20 8.85 16 36 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 1.10 6.54 -51.93 -0.34 0.76 16 39 H 0.07 0.85 6.26 -51.93 -0.32 0.53 16 40 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.08 1.48 7.81 -51.93 -0.41 1.07 16 42 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 44 H 0.09 1.36 6.36 -51.93 -0.33 1.03 16 45 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.16 1.41 8.06 -52.49 -0.42 0.98 16 47 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 48 H 0.16 1.53 8.06 -52.48 -0.42 1.10 16 LS Contribution 377.21 15.07 5.68 5.68 Total: -1.00 -36.40 377.21 -9.64 -46.04 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -7.25 Total: 10.76 kcal Atomic # 6 Polarization: 13.93 SS G_CDS: -2.40 Total: 11.54 kcal Atomic # 7 Polarization: -80.10 SS G_CDS: -1.03 Total: -81.13 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.07 Total: -10.96 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -4.71 Total: 18.07 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.40 -9.64 -46.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753697421.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.679 kcal (2) G-P(sol) polarization free energy of solvation -36.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds