Wall clock time and date at job start Tue Mar 31 2020 17:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 N 1.28595 * 124.62108 * 2 1 4 4 C 1.31379 * 108.71962 * 180.02562 * 3 2 1 5 5 C 1.39672 * 105.90298 * 359.97438 * 4 3 2 6 6 C 1.50699 * 127.05457 * 179.97438 * 5 4 3 7 7 C 1.53006 * 109.47263 * 125.00217 * 6 5 4 8 8 C 1.50688 * 109.47253 * 180.02562 * 7 6 5 9 9 O 1.21281 * 120.00513 * 359.97438 * 8 7 6 10 10 N 1.34782 * 119.99956 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00146 * 180.02562 * 10 8 7 12 12 H 1.08995 * 109.32201 * 49.22272 * 11 10 8 13 13 C 1.53036 * 109.32164 * 289.58021 * 11 10 8 14 14 C 1.53965 * 108.83007 * 295.31652 * 13 11 10 15 15 H 1.09004 * 112.99359 * 168.09800 * 14 13 11 16 16 C 1.55427 * 107.20465 * 293.48591 * 14 13 11 17 17 C 1.56617 * 99.71533 * 72.69083 * 16 14 13 18 18 H 1.09002 * 112.20606 * 163.88548 * 17 16 14 19 19 C 1.52985 * 109.18292 * 168.78109 * 11 10 8 20 20 N 1.47930 * 103.51801 * 42.25483 * 17 16 14 21 21 C 1.36943 * 125.91931 * 153.05003 * 20 17 16 22 22 H 1.08004 * 119.99591 * 358.33330 * 21 20 17 23 23 C 1.38811 * 120.00307 * 178.32869 * 21 20 17 24 24 N 1.31622 * 119.99838 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00002 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.47071 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47046 * 120.00021 * 25 23 21 28 28 H 1.48498 * 109.47142 * 239.99756 * 25 23 21 29 29 C 1.47077 * 108.21038 * 331.60628 * 20 17 16 30 30 N 1.28610 * 124.61980 * 180.33388 * 2 1 3 31 31 H 1.08996 * 109.47498 * 89.97131 * 1 2 3 32 32 H 1.09002 * 109.47331 * 209.97790 * 1 2 3 33 33 H 1.09003 * 109.47090 * 329.97373 * 1 2 3 34 34 H 1.08001 * 127.05014 * 180.02562 * 4 3 2 35 35 H 1.09003 * 109.46908 * 5.01119 * 6 5 4 36 36 H 1.08991 * 109.47860 * 245.00606 * 6 5 4 37 37 H 1.09004 * 109.46658 * 60.00112 * 7 6 5 38 38 H 1.09006 * 109.46671 * 300.00612 * 7 6 5 39 39 H 0.97003 * 119.99797 * 0.02562 * 10 8 7 40 40 H 1.09000 * 109.57066 * 175.51546 * 13 11 10 41 41 H 1.08996 * 109.68458 * 55.19210 * 13 11 10 42 42 H 1.09004 * 111.23942 * 191.43405 * 16 14 13 43 43 H 1.08997 * 111.23610 * 315.88921 * 16 14 13 44 44 H 1.08996 * 109.53488 * 184.97389 * 19 11 10 45 45 H 1.09005 * 109.52986 * 305.20546 * 19 11 10 46 46 H 0.96992 * 119.99565 * 179.97438 * 24 23 21 47 47 H 1.09004 * 109.97973 * 243.14822 * 29 20 17 48 48 H 1.08999 * 109.98161 * 121.90857 * 29 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.1955 1.0582 0.0000 4 6 3.4590 0.6983 -0.0006 5 6 3.4591 -0.6984 -0.0003 6 6 4.6618 -1.6065 -0.0013 7 6 4.5713 -2.5740 1.1806 8 6 5.7743 -3.4815 1.1800 9 8 6.6205 -3.3664 0.3188 10 7 5.9099 -4.4214 2.1365 11 6 7.0796 -5.3034 2.1363 12 1 7.9836 -4.7034 2.0320 13 6 6.9794 -6.2771 0.9600 14 6 5.7594 -7.1915 1.1744 15 1 5.5001 -7.7704 0.2879 16 6 6.0605 -8.0761 2.4164 17 6 5.9102 -7.0033 3.5476 18 1 5.8048 -7.4561 4.5335 19 6 7.1310 -6.0706 3.4589 20 7 4.7099 -6.2394 3.1425 21 6 3.8636 -5.5674 3.9836 22 1 4.0330 -5.5886 5.0501 23 6 2.7882 -4.8589 3.4656 24 7 2.5822 -4.8325 2.1658 25 14 1.6343 -3.9416 4.6130 26 1 2.0813 -4.1273 6.0169 27 1 1.6475 -2.4954 4.2759 28 1 0.2564 -4.4733 4.4582 29 6 4.6015 -6.2970 1.6768 30 7 2.1956 -1.0584 -0.0062 31 1 -0.3634 0.0005 -1.0276 32 1 -0.3634 -0.8902 0.5135 33 1 -0.3633 0.8898 0.5143 34 1 4.3210 1.3490 -0.0003 35 1 5.5687 -1.0083 0.0875 36 1 4.6893 -2.1721 -0.9325 37 1 3.6644 -3.1721 1.0919 38 1 4.5438 -2.0082 2.1119 39 1 5.2329 -4.5138 2.8251 40 1 7.8847 -6.8820 0.9085 41 1 6.8593 -5.7196 0.0311 42 1 5.3346 -8.8836 2.5114 43 1 7.0785 -8.4645 2.3871 44 1 8.0455 -6.6620 3.5019 45 1 7.1121 -5.3656 4.2901 46 1 1.8306 -4.3377 1.8040 47 1 4.6954 -5.2955 1.2568 48 1 3.6438 -6.7320 1.3910 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484320249.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:40 Heat of formation + Delta-G solvation = 144.889615 kcal Electronic energy + Delta-G solvation = -31054.066102 eV Core-core repulsion = 27149.332577 eV Total energy + Delta-G solvation = -3904.733525 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.28507 -40.58860 -37.87826 -34.54699 -33.68382 -33.02019 -32.61855 -31.22337 -30.69498 -30.22735 -28.10723 -27.14890 -25.27652 -24.27664 -23.17330 -22.09145 -21.54264 -20.32097 -19.60133 -19.09201 -18.65014 -17.21942 -16.99302 -16.62853 -16.10381 -15.20355 -15.00389 -14.65990 -14.58203 -14.41781 -13.62071 -13.57438 -13.29892 -13.16145 -12.84222 -12.50783 -12.40197 -12.27731 -12.16489 -11.86269 -11.74540 -11.56466 -11.50021 -11.37236 -11.11444 -10.95800 -10.89253 -10.54526 -10.53243 -10.29888 -10.11655 -9.94216 -9.80618 -9.69901 -9.56008 -9.33078 -8.95754 -8.79769 -8.67828 -7.35819 -6.89741 -5.88383 -3.26135 2.05021 2.53327 2.68657 3.27270 3.35116 3.36637 3.66440 4.25821 4.32061 4.36720 5.00096 5.01978 5.17451 5.21173 5.25233 5.28436 5.33560 5.45381 5.51109 5.65813 5.76736 5.83266 5.83356 5.90267 5.96729 6.02399 6.13140 6.18813 6.26065 6.30739 6.33227 6.38000 6.49899 6.52232 6.62695 6.64355 6.76123 6.87871 6.90978 6.92152 6.96685 7.05733 7.50324 7.65005 7.67688 7.84509 8.10828 8.58361 8.82887 9.06296 9.43397 9.61222 10.30166 11.17811 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.013057 B = 0.004742 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.911934 B = 5903.274135 C = 7303.721619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.165 5.165 3 N -0.300 5.300 4 C -0.029 4.029 5 C 0.013 3.987 6 C -0.011 4.011 7 C -0.144 4.144 8 C 0.511 3.489 9 O -0.585 6.585 10 N -0.694 5.694 11 C 0.159 3.841 12 H 0.059 0.941 13 C -0.121 4.121 14 C -0.122 4.122 15 H 0.072 0.928 16 C -0.127 4.127 17 C 0.151 3.849 18 H 0.065 0.935 19 C -0.141 4.141 20 N -0.597 5.597 21 C -0.249 4.249 22 H 0.081 0.919 23 C 0.001 3.999 24 N -0.902 5.902 25 Si 0.903 3.097 26 H -0.280 1.280 27 H -0.290 1.290 28 H -0.289 1.289 29 C 0.147 3.853 30 N -0.272 5.272 31 H 0.085 0.915 32 H 0.103 0.897 33 H 0.098 0.902 34 H 0.194 0.806 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.136 0.864 38 H 0.075 0.925 39 H 0.438 0.562 40 H 0.054 0.946 41 H 0.070 0.930 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.063 0.937 45 H 0.061 0.939 46 H 0.259 0.741 47 H 0.087 0.913 48 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.900 4.131 -2.297 5.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.066 5.066 3 N -0.141 5.141 4 C -0.211 4.211 5 C -0.150 4.150 6 C -0.051 4.051 7 C -0.184 4.184 8 C 0.298 3.702 9 O -0.468 6.468 10 N -0.360 5.360 11 C 0.054 3.946 12 H 0.077 0.923 13 C -0.160 4.160 14 C -0.141 4.141 15 H 0.091 0.909 16 C -0.166 4.166 17 C 0.043 3.957 18 H 0.083 0.917 19 C -0.181 4.181 20 N -0.323 5.323 21 C -0.377 4.377 22 H 0.099 0.901 23 C -0.197 4.197 24 N -0.548 5.548 25 Si 0.733 3.267 26 H -0.205 1.205 27 H -0.216 1.216 28 H -0.216 1.216 29 C 0.023 3.977 30 N -0.114 5.114 31 H 0.104 0.896 32 H 0.121 0.879 33 H 0.116 0.884 34 H 0.211 0.789 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.153 0.847 38 H 0.093 0.907 39 H 0.294 0.706 40 H 0.073 0.927 41 H 0.089 0.911 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.070 0.930 47 H 0.105 0.895 48 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 0.767 4.345 -2.826 5.239 hybrid contribution -0.166 0.411 0.943 1.042 sum 0.601 4.755 -1.883 5.150 Atomic orbital electron populations 1.22041 0.70751 1.05687 1.04517 1.47887 1.08713 0.99535 1.50442 1.73939 1.04007 1.16466 1.19702 1.24617 0.94300 0.94896 1.07288 1.23360 0.92886 0.93978 1.04791 1.19635 0.90688 0.94816 0.99912 1.21795 1.00726 0.97698 0.98179 1.20504 0.86910 0.81084 0.81726 1.90555 1.44332 1.72933 1.38951 1.47624 1.25335 1.31607 1.31475 1.20570 0.88856 0.90614 0.94602 0.92317 1.22039 0.97388 0.97377 0.99157 1.22820 0.97517 0.96854 0.96886 0.90939 1.23195 0.99634 0.97096 0.96626 1.21876 0.86986 0.90745 0.96080 0.91709 1.22492 0.99517 0.99514 0.96596 1.44960 1.26097 1.58210 1.03077 1.19161 1.05201 1.23673 0.89619 0.90133 1.24792 0.98299 1.00572 0.96086 1.69931 1.30920 1.44699 1.09242 0.86180 0.81184 0.79392 0.79922 1.20507 1.21640 1.21612 1.22160 0.93066 0.99580 0.82888 1.74181 1.03678 1.14771 1.18732 0.89602 0.87889 0.88376 0.78865 0.89821 0.89718 0.84658 0.90663 0.70630 0.92724 0.91149 0.91992 0.92382 0.91864 0.92029 0.93041 0.89546 0.94591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.14 11.57 59.84 0.69 1.84 16 2 N -0.17 -2.59 4.35 -16.64 -0.07 -2.66 16 3 N -0.30 -4.70 12.05 30.67 0.37 -4.33 16 4 C -0.03 -0.43 12.15 -17.21 -0.21 -0.64 16 5 C 0.01 0.22 6.61 -82.25 -0.54 -0.32 16 6 C -0.01 -0.18 5.10 -27.88 -0.14 -0.33 16 7 C -0.14 -2.86 5.65 -27.89 -0.16 -3.02 16 8 C 0.51 10.81 6.13 -10.99 -0.07 10.75 16 9 O -0.58 -13.06 14.77 5.56 0.08 -12.98 16 10 N -0.69 -14.51 2.76 -53.80 -0.15 -14.66 16 11 C 0.16 2.98 2.72 -67.92 -0.19 2.79 16 12 H 0.06 1.10 8.01 -51.93 -0.42 0.68 16 13 C -0.12 -2.19 5.17 -26.21 -0.14 -2.33 16 14 C -0.12 -2.29 4.27 -87.93 -0.38 -2.67 16 15 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 16 C -0.13 -2.17 6.31 -23.49 -0.15 -2.32 16 17 C 0.15 2.82 4.28 -64.74 -0.28 2.55 16 18 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 19 C -0.14 -2.39 5.45 -26.28 -0.14 -2.54 16 20 N -0.60 -13.34 1.82 -160.37 -0.29 -13.63 16 21 C -0.25 -6.04 8.72 -15.06 -0.13 -6.17 16 22 H 0.08 1.93 7.83 -52.48 -0.41 1.52 16 23 C 0.00 0.02 5.15 -17.43 -0.09 -0.07 16 24 N -0.90 -22.75 8.32 55.49 0.46 -22.28 16 25 Si 0.90 20.28 29.55 -169.99 -5.02 15.26 16 26 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 27 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 28 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 29 C 0.15 3.32 3.87 -2.83 -0.01 3.31 16 30 N -0.27 -4.93 12.05 33.71 0.41 -4.52 16 31 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.19 2.16 8.06 -52.49 -0.42 1.74 16 35 H 0.08 1.30 8.09 -51.93 -0.42 0.88 16 36 H 0.08 1.51 8.10 -51.93 -0.42 1.09 16 37 H 0.14 3.03 5.90 -51.93 -0.31 2.72 16 38 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 39 H 0.44 9.82 3.67 -40.82 -0.15 9.67 16 40 H 0.05 0.86 8.01 -51.93 -0.42 0.44 16 41 H 0.07 1.41 6.89 -51.93 -0.36 1.05 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.06 0.85 7.83 -51.93 -0.41 0.45 16 44 H 0.06 0.91 8.04 -51.93 -0.42 0.49 16 45 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.26 6.56 8.30 -40.82 -0.34 6.22 16 47 H 0.09 2.06 3.20 -61.83 -0.20 1.86 16 48 H 0.04 0.93 7.40 -51.93 -0.38 0.55 16 LS Contribution 364.59 15.07 5.49 5.49 Total: -1.00 -29.34 364.59 -7.89 -37.23 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: -7.24 Total: 16.26 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: -1.92 Total: 0.83 kcal Atomic # 7 Polarization: -62.81 SS G_CDS: 0.72 Total: -62.09 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.08 Total: -12.98 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.34 -7.89 -37.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484320249.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.117 kcal (2) G-P(sol) polarization free energy of solvation -29.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds