Wall clock time and date at job start Tue Mar 31 2020 17:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09009 * 109.46656 * 2 1 4 4 C 1.50699 * 109.47484 * 240.00096 * 2 1 3 5 5 O 1.21281 * 119.99598 * 265.59416 * 4 2 1 6 6 N 1.34773 * 120.00136 * 85.59631 * 4 2 1 7 7 C 1.46496 * 120.00317 * 4.91356 * 6 4 2 8 8 C 1.46501 * 119.99805 * 184.91845 * 6 4 2 9 9 C 1.50696 * 109.47285 * 89.99794 * 8 6 4 10 10 H 1.07998 * 120.00558 * 0.02562 * 9 8 6 11 11 C 1.37886 * 120.00092 * 179.97438 * 9 8 6 12 12 N 1.31510 * 119.99680 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 120.00029 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47083 * 89.99924 * 13 11 9 15 15 H 1.48502 * 109.47166 * 209.99966 * 13 11 9 16 16 H 1.48506 * 109.47165 * 330.00098 * 13 11 9 17 17 N 1.46895 * 109.47316 * 119.99547 * 2 1 3 18 18 C 1.46901 * 111.00217 * 181.10001 * 17 2 1 19 19 C 1.46905 * 110.99919 * 305.04981 * 17 2 1 20 20 C 1.50706 * 109.46837 * 169.99601 * 19 17 2 21 21 C 1.38306 * 119.96414 * 269.95448 * 20 19 17 22 22 C 1.38261 * 120.14987 * 179.97438 * 21 20 19 23 23 C 1.38127 * 120.07392 * 0.04971 * 22 21 20 24 24 C 1.38887 * 119.92440 * 359.97438 * 23 22 21 25 25 N 1.39674 * 120.07430 * 179.97438 * 24 23 22 26 26 C 1.46503 * 120.00224 * 173.99324 * 25 24 23 27 27 C 1.46504 * 119.99860 * 353.99243 * 25 24 23 28 28 C 1.38079 * 119.95948 * 90.00596 * 20 19 17 29 29 H 1.08999 * 109.46750 * 185.78155 * 1 2 3 30 30 H 1.09000 * 109.47562 * 305.78774 * 1 2 3 31 31 H 1.08999 * 109.46846 * 65.78851 * 1 2 3 32 32 H 1.09001 * 109.47166 * 94.52790 * 7 6 4 33 33 H 1.08999 * 109.47561 * 214.53522 * 7 6 4 34 34 H 1.09008 * 109.47063 * 334.53677 * 7 6 4 35 35 H 1.09002 * 109.47208 * 209.99946 * 8 6 4 36 36 H 1.09007 * 109.47112 * 329.99417 * 8 6 4 37 37 H 0.96998 * 120.00287 * 179.97438 * 12 11 9 38 38 H 1.09000 * 109.46982 * 179.25338 * 18 17 2 39 39 H 1.08997 * 109.46787 * 299.24485 * 18 17 2 40 40 H 1.08996 * 109.47391 * 59.24473 * 18 17 2 41 41 H 1.09001 * 109.46773 * 50.00293 * 19 17 2 42 42 H 1.08993 * 109.47470 * 289.99760 * 19 17 2 43 43 H 1.08001 * 119.92627 * 0.02562 * 21 20 19 44 44 H 1.08002 * 119.96310 * 180.02562 * 22 21 20 45 45 H 1.08006 * 120.03495 * 179.97438 * 23 22 21 46 46 H 1.08992 * 109.47402 * 89.99600 * 26 25 24 47 47 H 1.08998 * 109.46955 * 210.00297 * 26 25 24 48 48 H 1.09002 * 109.46857 * 329.99700 * 26 25 24 49 49 H 1.08999 * 109.47393 * 5.07808 * 27 25 24 50 50 H 1.08999 * 109.47337 * 125.08066 * 27 25 24 51 51 H 1.09004 * 109.46731 * 245.08290 * 27 25 24 52 52 H 1.07995 * 120.04044 * 0.25010 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.3106 -1.8897 -1.1786 6 7 2.1726 -0.0352 -2.3884 7 6 1.9402 1.4108 -2.4260 8 6 2.5573 -0.7472 -3.6095 9 6 1.3190 -1.2193 -4.3270 10 1 0.3430 -1.0096 -3.9149 11 6 1.4319 -1.9182 -5.5103 12 7 2.6203 -2.1723 -6.0129 13 14 -0.1030 -2.5039 -6.3992 14 1 -0.5548 -1.4561 -7.3496 15 1 0.2028 -3.7507 -7.1457 16 1 -1.1771 -2.7705 -5.4090 17 7 2.0197 -0.6924 1.1994 18 6 3.4879 -0.6892 1.2466 19 6 1.4526 -0.0994 2.4180 20 6 1.7752 -0.9763 3.6004 21 6 0.9067 -1.9882 3.9673 22 6 1.1991 -2.7954 5.0511 23 6 2.3599 -2.5928 5.7718 24 6 3.2340 -1.5772 5.4064 25 7 4.4084 -1.3692 6.1333 26 6 5.3920 -0.3869 5.6708 27 6 4.6565 -2.1333 7.3585 28 6 2.9370 -0.7679 4.3169 29 1 -0.3633 -1.0225 0.1035 30 1 -0.3634 0.6009 0.8336 31 1 -0.3633 0.4215 -0.9373 32 1 2.8877 1.9345 -2.2991 33 1 1.5000 1.6833 -3.3851 34 1 1.2601 1.6905 -1.6214 35 1 3.1202 -0.0768 -4.2590 36 1 3.1763 -1.6060 -3.3497 37 1 2.6999 -2.6642 -6.8451 38 1 3.8235 -1.1965 2.1511 39 1 3.8806 -1.2081 0.3722 40 1 3.8491 0.3392 1.2515 41 1 0.3710 -0.0159 2.3120 42 1 1.8801 0.8912 2.5730 43 1 -0.0016 -2.1488 3.4054 44 1 0.5190 -3.5850 5.3347 45 1 2.5875 -3.2234 6.6186 46 1 5.1661 0.5863 6.1062 47 1 6.3899 -0.6997 5.9780 48 1 5.3518 -0.3168 4.5837 49 1 3.8660 -2.8716 7.4927 50 1 5.6183 -2.6406 7.2818 51 1 4.6699 -1.4561 8.2125 52 1 3.6124 0.0255 4.0328 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089922429.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:38 Heat of formation + Delta-G solvation = 24.959373 kcal Electronic energy + Delta-G solvation = -29227.500095 eV Core-core repulsion = 25421.106348 eV Total energy + Delta-G solvation = -3806.393747 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.05349 -39.31661 -37.22691 -35.94730 -34.68502 -32.71568 -32.03827 -30.51011 -30.23928 -28.70634 -27.86182 -26.68835 -25.76407 -25.01342 -24.43406 -23.30561 -21.85894 -21.24754 -20.02119 -18.22046 -17.44588 -16.64124 -16.47598 -16.01368 -15.82854 -15.52535 -15.30710 -15.07616 -14.82763 -14.49642 -14.16087 -13.95583 -13.80793 -13.60125 -13.19763 -12.98803 -12.84708 -12.59290 -12.42977 -12.30684 -12.12654 -12.09454 -12.03170 -11.94763 -11.75208 -11.48210 -11.32969 -11.24712 -11.06818 -11.00689 -10.84557 -10.75176 -10.53361 -10.12383 -9.91078 -9.58349 -8.83285 -8.75569 -8.40705 -8.05636 -7.56401 -7.39258 -6.01269 -4.05929 1.36737 1.61252 2.92288 3.31941 3.38635 3.42138 3.47840 3.64805 3.99522 4.34081 4.47741 4.59931 4.72884 4.83296 4.97243 5.02251 5.03965 5.11776 5.22174 5.28786 5.30278 5.32974 5.35838 5.37543 5.40208 5.43285 5.49942 5.58227 5.63670 5.66142 5.76925 5.80492 5.85965 5.91019 5.94506 5.97658 6.20092 6.21078 6.27490 6.40595 6.52916 6.72380 6.80221 7.00166 7.06108 7.18037 7.21916 7.37240 7.49693 7.60299 7.95909 8.27117 8.48651 8.94525 9.19488 9.59240 11.06777 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.019702 B = 0.002382 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.862137 B =11751.476957 C =11974.524909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.064 3.936 3 H 0.055 0.945 4 C 0.512 3.488 5 O -0.521 6.521 6 N -0.606 5.606 7 C 0.081 3.919 8 C 0.246 3.754 9 C -0.525 4.525 10 H 0.057 0.943 11 C 0.060 3.940 12 N -0.895 5.895 13 Si 0.898 3.102 14 H -0.281 1.281 15 H -0.285 1.285 16 H -0.274 1.274 17 N -0.510 5.510 18 C 0.021 3.979 19 C 0.088 3.912 20 C -0.025 4.025 21 C -0.151 4.151 22 C -0.074 4.074 23 C -0.201 4.201 24 C 0.209 3.791 25 N -0.642 5.642 26 C 0.096 3.904 27 C 0.092 3.908 28 C -0.187 4.187 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.042 0.958 33 H 0.072 0.928 34 H 0.058 0.942 35 H 0.031 0.969 36 H 0.044 0.956 37 H 0.263 0.737 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.017 0.983 41 H 0.090 0.910 42 H 0.038 0.962 43 H 0.120 0.880 44 H 0.119 0.881 45 H 0.120 0.880 46 H 0.045 0.955 47 H 0.064 0.936 48 H 0.068 0.932 49 H 0.077 0.923 50 H 0.053 0.947 51 H 0.049 0.951 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.289 7.369 25.677 26.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.048 4.048 3 H 0.072 0.928 4 C 0.297 3.703 5 O -0.396 6.396 6 N -0.339 5.339 7 C -0.063 4.063 8 C 0.127 3.873 9 C -0.564 4.564 10 H 0.075 0.925 11 C -0.142 4.142 12 N -0.534 5.534 13 Si 0.725 3.275 14 H -0.207 1.207 15 H -0.211 1.211 16 H -0.199 1.199 17 N -0.234 5.234 18 C -0.127 4.127 19 C -0.039 4.039 20 C -0.026 4.026 21 C -0.171 4.171 22 C -0.093 4.093 23 C -0.224 4.224 24 C 0.109 3.891 25 N -0.355 5.355 26 C -0.048 4.048 27 C -0.052 4.052 28 C -0.210 4.210 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.061 0.939 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.049 0.951 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.098 0.902 40 H 0.036 0.964 41 H 0.108 0.892 42 H 0.057 0.943 43 H 0.138 0.862 44 H 0.137 0.863 45 H 0.137 0.863 46 H 0.063 0.937 47 H 0.083 0.917 48 H 0.087 0.913 49 H 0.096 0.904 50 H 0.072 0.928 51 H 0.067 0.933 52 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.560 6.190 25.579 26.364 hybrid contribution -0.403 0.592 -0.589 0.927 sum 1.157 6.783 24.991 25.921 Atomic orbital electron populations 1.21818 0.92387 1.03676 1.02106 1.21703 0.97171 0.95632 0.90259 0.92769 1.20019 0.78964 0.87521 0.83794 1.90668 1.49040 1.15509 1.84355 1.48156 1.67825 1.07579 1.10360 1.21677 0.99789 0.82141 1.02697 1.19260 0.96149 0.92553 0.79343 1.21437 0.92972 1.35583 1.06391 0.92471 1.24942 0.96209 0.95766 0.97247 1.69932 1.22256 1.40651 1.20570 0.86504 0.83170 0.78235 0.79561 1.20684 1.21096 1.19858 1.61694 1.08148 1.53838 0.99722 1.22516 0.87007 0.99196 1.04012 1.21184 1.00984 0.94086 0.87687 1.19441 0.93406 0.95565 0.94198 1.20804 1.00997 0.96911 0.98395 1.20865 0.95808 0.98068 0.94569 1.20666 0.96962 1.00705 1.04030 1.17751 0.86330 0.93740 0.91298 1.46234 1.19063 1.43864 1.26339 1.21570 0.91426 0.91436 1.00318 1.21655 1.01637 0.95895 0.85964 1.20520 0.99214 1.02946 0.98353 0.90743 0.91998 0.91291 0.93937 0.90911 0.92314 0.95147 0.93797 0.92749 0.90961 0.90244 0.96436 0.89204 0.94349 0.86200 0.86258 0.86265 0.93660 0.91722 0.91349 0.90420 0.92831 0.93291 0.86452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 8.36 37.16 0.31 -1.68 16 2 C 0.06 1.02 1.63 -68.87 -0.11 0.91 16 3 H 0.05 0.76 6.57 -51.92 -0.34 0.42 16 4 C 0.51 10.96 5.93 -10.99 -0.07 10.89 16 5 O -0.52 -13.57 15.03 5.56 0.08 -13.48 16 6 N -0.61 -13.11 2.86 -182.95 -0.52 -13.63 16 7 C 0.08 1.31 10.09 59.84 0.60 1.92 16 8 C 0.25 6.56 5.22 -5.19 -0.03 6.53 16 9 C -0.52 -15.04 9.39 -34.44 -0.32 -15.37 16 10 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 11 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 12 N -0.90 -26.94 13.29 55.43 0.74 -26.20 16 13 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 14 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 15 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 16 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 17 N -0.51 -7.90 4.33 -237.73 -1.03 -8.93 16 18 C 0.02 0.31 8.89 60.07 0.53 0.85 16 19 C 0.09 1.07 4.85 -4.97 -0.02 1.05 16 20 C -0.02 -0.31 4.89 -104.65 -0.51 -0.82 16 21 C -0.15 -1.84 9.70 -39.55 -0.38 -2.22 16 22 C -0.07 -0.82 10.04 -39.61 -0.40 -1.22 16 23 C -0.20 -2.16 9.31 -39.38 -0.37 -2.53 16 24 C 0.21 2.35 6.53 -83.79 -0.55 1.80 16 25 N -0.64 -5.95 3.41 -187.55 -0.64 -6.59 16 26 C 0.10 0.71 10.09 59.85 0.60 1.32 16 27 C 0.09 0.62 10.62 59.85 0.64 1.25 16 28 C -0.19 -2.19 6.99 -39.38 -0.28 -2.46 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 30 H 0.06 0.66 6.47 -51.93 -0.34 0.33 16 31 H 0.07 0.97 7.53 -51.93 -0.39 0.58 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 1.20 8.11 -51.93 -0.42 0.78 16 34 H 0.06 0.78 5.33 -51.92 -0.28 0.50 16 35 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 36 H 0.04 1.32 7.36 -51.93 -0.38 0.94 16 37 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.07 1.04 5.84 -51.93 -0.30 0.74 16 39 H 0.08 1.47 6.41 -51.93 -0.33 1.13 16 40 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.09 1.00 5.75 -51.93 -0.30 0.70 16 42 H 0.04 0.42 8.06 -51.93 -0.42 0.00 16 43 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 44 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 45 H 0.12 1.04 5.75 -52.48 -0.30 0.74 16 46 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 47 H 0.06 0.38 8.07 -51.93 -0.42 -0.03 16 48 H 0.07 0.54 6.48 -51.93 -0.34 0.21 16 49 H 0.08 0.49 5.31 -51.93 -0.28 0.21 16 50 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 51 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 52 H 0.12 1.25 6.24 -52.49 -0.33 0.93 16 LS Contribution 406.19 15.07 6.12 6.12 Total: -1.00 -34.85 406.19 -9.22 -44.07 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -8.51 Total: -0.29 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: -0.44 Total: 1.86 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: -1.45 Total: -55.35 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: 0.08 Total: -13.48 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.85 -9.22 -44.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089922429.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.034 kcal (2) G-P(sol) polarization free energy of solvation -34.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds