Wall clock time and date at job start Tue Mar 31 2020 17:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09009 * 109.46656 * 2 1 4 4 C 1.50699 * 109.47484 * 240.00096 * 2 1 3 5 5 O 1.21281 * 119.99598 * 265.59416 * 4 2 1 6 6 N 1.34773 * 120.00136 * 85.59631 * 4 2 1 7 7 C 1.46496 * 120.00317 * 4.91356 * 6 4 2 8 8 C 1.46501 * 119.99805 * 184.91845 * 6 4 2 9 9 C 1.50696 * 109.47285 * 89.99794 * 8 6 4 10 10 H 1.07998 * 120.00558 * 0.02562 * 9 8 6 11 11 C 1.37886 * 120.00092 * 179.97438 * 9 8 6 12 12 N 1.31510 * 119.99680 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 120.00029 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47083 * 89.99924 * 13 11 9 15 15 H 1.48502 * 109.47166 * 209.99966 * 13 11 9 16 16 H 1.48506 * 109.47165 * 330.00098 * 13 11 9 17 17 N 1.46895 * 109.47316 * 119.99547 * 2 1 3 18 18 C 1.46901 * 111.00217 * 181.10001 * 17 2 1 19 19 C 1.46905 * 110.99919 * 305.04981 * 17 2 1 20 20 C 1.50706 * 109.46837 * 169.99601 * 19 17 2 21 21 C 1.38306 * 119.96414 * 269.95448 * 20 19 17 22 22 C 1.38261 * 120.14987 * 179.97438 * 21 20 19 23 23 C 1.38127 * 120.07392 * 0.04971 * 22 21 20 24 24 C 1.38887 * 119.92440 * 359.97438 * 23 22 21 25 25 N 1.39674 * 120.07430 * 179.97438 * 24 23 22 26 26 C 1.46503 * 120.00224 * 173.99324 * 25 24 23 27 27 C 1.46504 * 119.99860 * 353.99243 * 25 24 23 28 28 C 1.38079 * 119.95948 * 90.00596 * 20 19 17 29 29 H 1.08999 * 109.46750 * 185.78155 * 1 2 3 30 30 H 1.09000 * 109.47562 * 305.78774 * 1 2 3 31 31 H 1.08999 * 109.46846 * 65.78851 * 1 2 3 32 32 H 1.09001 * 109.47166 * 94.52790 * 7 6 4 33 33 H 1.08999 * 109.47561 * 214.53522 * 7 6 4 34 34 H 1.09008 * 109.47063 * 334.53677 * 7 6 4 35 35 H 1.09002 * 109.47208 * 209.99946 * 8 6 4 36 36 H 1.09007 * 109.47112 * 329.99417 * 8 6 4 37 37 H 0.96998 * 120.00287 * 179.97438 * 12 11 9 38 38 H 1.09000 * 109.46982 * 179.25338 * 18 17 2 39 39 H 1.08997 * 109.46787 * 299.24485 * 18 17 2 40 40 H 1.08996 * 109.47391 * 59.24473 * 18 17 2 41 41 H 1.09001 * 109.46773 * 50.00293 * 19 17 2 42 42 H 1.08993 * 109.47470 * 289.99760 * 19 17 2 43 43 H 1.08001 * 119.92627 * 0.02562 * 21 20 19 44 44 H 1.08002 * 119.96310 * 180.02562 * 22 21 20 45 45 H 1.08006 * 120.03495 * 179.97438 * 23 22 21 46 46 H 1.08992 * 109.47402 * 89.99600 * 26 25 24 47 47 H 1.08998 * 109.46955 * 210.00297 * 26 25 24 48 48 H 1.09002 * 109.46857 * 329.99700 * 26 25 24 49 49 H 1.08999 * 109.47393 * 5.07808 * 27 25 24 50 50 H 1.08999 * 109.47337 * 125.08066 * 27 25 24 51 51 H 1.09004 * 109.46731 * 245.08290 * 27 25 24 52 52 H 1.07995 * 120.04044 * 0.25010 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.3106 -1.8897 -1.1786 6 7 2.1726 -0.0352 -2.3884 7 6 1.9402 1.4108 -2.4260 8 6 2.5573 -0.7472 -3.6095 9 6 1.3190 -1.2193 -4.3270 10 1 0.3430 -1.0096 -3.9149 11 6 1.4319 -1.9182 -5.5103 12 7 2.6203 -2.1723 -6.0129 13 14 -0.1030 -2.5039 -6.3992 14 1 -0.5548 -1.4561 -7.3496 15 1 0.2028 -3.7507 -7.1457 16 1 -1.1771 -2.7705 -5.4090 17 7 2.0197 -0.6924 1.1994 18 6 3.4879 -0.6892 1.2466 19 6 1.4526 -0.0994 2.4180 20 6 1.7752 -0.9763 3.6004 21 6 0.9067 -1.9882 3.9673 22 6 1.1991 -2.7954 5.0511 23 6 2.3599 -2.5928 5.7718 24 6 3.2340 -1.5772 5.4064 25 7 4.4084 -1.3692 6.1333 26 6 5.3920 -0.3869 5.6708 27 6 4.6565 -2.1333 7.3585 28 6 2.9370 -0.7679 4.3169 29 1 -0.3633 -1.0225 0.1035 30 1 -0.3634 0.6009 0.8336 31 1 -0.3633 0.4215 -0.9373 32 1 2.8877 1.9345 -2.2991 33 1 1.5000 1.6833 -3.3851 34 1 1.2601 1.6905 -1.6214 35 1 3.1202 -0.0768 -4.2590 36 1 3.1763 -1.6060 -3.3497 37 1 2.6999 -2.6642 -6.8451 38 1 3.8235 -1.1965 2.1511 39 1 3.8806 -1.2081 0.3722 40 1 3.8491 0.3392 1.2515 41 1 0.3710 -0.0159 2.3120 42 1 1.8801 0.8912 2.5730 43 1 -0.0016 -2.1488 3.4054 44 1 0.5190 -3.5850 5.3347 45 1 2.5875 -3.2234 6.6186 46 1 5.1661 0.5863 6.1062 47 1 6.3899 -0.6997 5.9780 48 1 5.3518 -0.3168 4.5837 49 1 3.8660 -2.8716 7.4927 50 1 5.6183 -2.6406 7.2818 51 1 4.6699 -1.4561 8.2125 52 1 3.6124 0.0255 4.0328 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089922429.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:37 Heat of formation + Delta-G solvation = 2.474672 kcal Electronic energy + Delta-G solvation = -29228.475105 eV Core-core repulsion = 25421.106348 eV Total energy + Delta-G solvation = -3807.368757 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.21533 -40.51373 -38.36849 -36.86173 -36.47479 -34.75746 -33.16396 -31.62551 -31.01928 -29.80504 -29.32984 -27.72505 -27.28994 -25.92741 -25.63563 -24.91445 -22.99525 -22.35726 -20.89783 -19.77659 -18.67136 -18.35693 -17.97221 -17.28401 -16.84105 -16.62033 -16.46839 -16.22717 -15.92939 -15.80576 -15.54312 -15.26490 -14.78833 -14.63031 -14.41385 -14.10423 -14.00814 -13.84324 -13.46775 -13.42317 -13.34934 -13.28087 -13.16887 -13.04441 -12.88095 -12.79883 -12.79341 -12.56541 -12.47723 -12.38375 -12.33955 -12.19603 -11.98014 -11.69667 -11.58829 -10.67432 -10.63943 -10.43227 -9.69169 -9.40435 -9.16765 -8.21967 -8.13235 -6.36962 0.51226 0.76649 1.36255 1.39814 1.50045 1.85513 2.24375 2.29547 2.42015 2.85979 3.07365 3.23907 3.67393 3.81496 4.00664 4.06827 4.08826 4.13857 4.27109 4.33644 4.40254 4.40850 4.51331 4.52122 4.55461 4.58854 4.66900 4.69524 4.70936 4.75134 4.77869 4.87531 4.89366 4.93598 4.95589 4.98748 5.01653 5.02559 5.15961 5.23552 5.28068 5.39844 5.56721 5.68447 5.83040 5.85763 5.94138 6.04987 6.06936 6.12338 6.39562 6.61458 6.71519 6.82266 7.29404 7.54318 8.85193 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.019702 B = 0.002382 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.862137 B =11751.476957 C =11974.524909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.077 3.923 3 H 0.086 0.914 4 C 0.503 3.497 5 O -0.581 6.581 6 N -0.613 5.613 7 C 0.076 3.924 8 C 0.261 3.739 9 C -0.540 4.540 10 H 0.055 0.945 11 C 0.005 3.995 12 N -0.930 5.930 13 Si 0.969 3.031 14 H -0.261 1.261 15 H -0.282 1.282 16 H -0.272 1.272 17 N -0.532 5.532 18 C 0.030 3.970 19 C 0.093 3.907 20 C -0.038 4.038 21 C -0.172 4.172 22 C -0.080 4.080 23 C -0.210 4.210 24 C 0.200 3.800 25 N -0.648 5.648 26 C 0.092 3.908 27 C 0.086 3.914 28 C -0.197 4.197 29 H 0.051 0.949 30 H 0.104 0.896 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.096 0.904 35 H 0.022 0.978 36 H -0.006 1.006 37 H 0.267 0.733 38 H 0.076 0.924 39 H 0.037 0.963 40 H 0.040 0.960 41 H 0.102 0.898 42 H 0.058 0.942 43 H 0.119 0.881 44 H 0.137 0.863 45 H 0.138 0.862 46 H 0.053 0.947 47 H 0.080 0.920 48 H 0.060 0.940 49 H 0.080 0.920 50 H 0.063 0.937 51 H 0.061 0.939 52 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.003 9.166 27.437 28.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.034 4.034 3 H 0.104 0.896 4 C 0.291 3.709 5 O -0.460 6.460 6 N -0.345 5.345 7 C -0.067 4.067 8 C 0.139 3.861 9 C -0.579 4.579 10 H 0.073 0.927 11 C -0.194 4.194 12 N -0.570 5.570 13 Si 0.793 3.207 14 H -0.186 1.186 15 H -0.208 1.208 16 H -0.197 1.197 17 N -0.258 5.258 18 C -0.118 4.118 19 C -0.033 4.033 20 C -0.039 4.039 21 C -0.192 4.192 22 C -0.099 4.099 23 C -0.232 4.232 24 C 0.098 3.902 25 N -0.360 5.360 26 C -0.051 4.051 27 C -0.056 4.056 28 C -0.220 4.220 29 H 0.070 0.930 30 H 0.122 0.878 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.114 0.886 35 H 0.040 0.960 36 H 0.012 0.988 37 H 0.076 0.924 38 H 0.095 0.905 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.120 0.880 42 H 0.076 0.924 43 H 0.137 0.863 44 H 0.154 0.846 45 H 0.155 0.845 46 H 0.072 0.928 47 H 0.098 0.902 48 H 0.079 0.921 49 H 0.099 0.901 50 H 0.081 0.919 51 H 0.079 0.921 52 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.278 8.051 27.372 28.532 hybrid contribution 0.099 0.016 -1.047 1.052 sum 0.378 8.067 26.325 27.536 Atomic orbital electron populations 1.21844 0.90636 1.03179 1.03915 1.21624 0.98226 0.96001 0.87587 0.89608 1.21110 0.77552 0.87124 0.85109 1.90631 1.51464 1.18435 1.85459 1.48182 1.67530 1.09818 1.08999 1.21980 1.02000 0.78651 1.04029 1.18711 0.94933 0.91228 0.81200 1.21699 0.93292 1.36031 1.06868 0.92670 1.25897 0.99616 0.95702 0.98135 1.70059 1.24551 1.41245 1.21109 0.85399 0.78850 0.78100 0.78374 1.18626 1.20752 1.19666 1.61591 1.08156 1.55233 1.00773 1.22345 0.87308 0.99974 1.02154 1.21225 1.01542 0.94646 0.85897 1.19548 0.93886 0.95966 0.94533 1.20961 1.01387 0.97647 0.99218 1.21126 0.96303 0.98244 0.94218 1.20941 0.96780 1.00888 1.04565 1.17973 0.87103 0.93699 0.91410 1.46496 1.18616 1.44161 1.26732 1.21679 0.91849 0.91613 0.99974 1.21812 1.02239 0.96155 0.85388 1.20634 0.99216 1.03463 0.98700 0.93019 0.87783 0.91255 0.91620 0.91352 0.88568 0.96026 0.98752 0.92439 0.90522 0.94439 0.94178 0.88002 0.92402 0.86303 0.84551 0.84475 0.92842 0.90178 0.92091 0.90137 0.91865 0.92066 0.85761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.55 8.36 71.98 0.60 -2.94 16 2 C 0.08 2.32 1.63 44.17 0.07 2.40 16 3 H 0.09 2.06 6.57 -2.38 -0.02 2.05 16 4 C 0.50 21.94 5.93 87.66 0.52 22.46 16 5 O -0.58 -31.97 15.03 -3.03 -0.05 -32.02 16 6 N -0.61 -26.88 2.86 -851.13 -2.43 -29.31 16 7 C 0.08 2.30 10.09 127.77 1.29 3.59 16 8 C 0.26 14.54 5.22 85.63 0.45 14.99 16 9 C -0.54 -31.76 9.39 25.60 0.24 -31.52 16 10 H 0.06 3.19 7.81 -2.91 -0.02 3.16 16 11 C 0.01 0.31 5.46 84.66 0.46 0.77 16 12 N -0.93 -57.46 13.29 21.45 0.28 -57.18 16 13 Si 0.97 45.64 29.54 68.60 2.03 47.66 16 14 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 15 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 16 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 17 N -0.53 -15.99 4.33 -906.03 -3.92 -19.91 16 18 C 0.03 0.92 8.89 127.69 1.14 2.05 16 19 C 0.09 2.06 4.85 85.56 0.41 2.48 16 20 C -0.04 -0.90 4.89 -19.88 -0.10 -1.00 16 21 C -0.17 -4.08 9.70 22.29 0.22 -3.87 16 22 C -0.08 -1.70 10.04 22.25 0.22 -1.47 16 23 C -0.21 -4.24 9.31 22.40 0.21 -4.03 16 24 C 0.20 4.23 6.53 38.21 0.25 4.48 16 25 N -0.65 -10.92 3.41 -747.27 -2.55 -13.46 16 26 C 0.09 1.21 10.09 127.77 1.29 2.50 16 27 C 0.09 0.99 10.62 127.77 1.36 2.35 16 28 C -0.20 -4.37 6.99 22.40 0.16 -4.21 16 29 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.10 1.80 6.47 -2.39 -0.02 1.78 16 31 H 0.07 1.78 7.53 -2.39 -0.02 1.76 16 32 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.07 2.15 8.11 -2.39 -0.02 2.13 16 34 H 0.10 2.19 5.33 -2.38 -0.01 2.18 16 35 H 0.02 1.22 8.07 -2.39 -0.02 1.20 16 36 H -0.01 -0.37 7.36 -2.38 -0.02 -0.38 16 37 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 38 H 0.08 2.21 5.84 -2.39 -0.01 2.20 16 39 H 0.04 1.44 6.41 -2.39 -0.02 1.43 16 40 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.10 1.97 5.75 -2.39 -0.01 1.96 16 42 H 0.06 1.07 8.06 -2.39 -0.02 1.05 16 43 H 0.12 2.73 8.06 -2.91 -0.02 2.71 16 44 H 0.14 2.27 8.06 -2.91 -0.02 2.24 16 45 H 0.14 2.15 5.75 -2.91 -0.02 2.14 16 46 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 47 H 0.08 0.80 8.07 -2.39 -0.02 0.78 16 48 H 0.06 0.89 6.48 -2.39 -0.02 0.88 16 49 H 0.08 0.86 5.31 -2.39 -0.01 0.85 16 50 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 51 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 52 H 0.12 2.47 6.24 -2.91 -0.02 2.45 16 Total: -1.00 -80.12 406.19 3.05 -77.06 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: 0.90 Total: 18.13 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: 8.79 Total: 9.02 kcal Atomic # 7 Polarization: -111.25 SS G_CDS: -8.61 Total: -119.86 kcal Atomic # 8 Polarization: -31.97 SS G_CDS: -0.05 Total: -32.02 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.66 kcal Total: -80.12 3.05 -77.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089922429.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.537 kcal (2) G-P(sol) polarization free energy of solvation -80.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds