Wall clock time and date at job start Tue Mar 31 2020 17:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34770 * 119.99936 * 2 1 4 4 O 1.21284 * 120.00308 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99961 * 180.02562 * 3 2 1 6 6 H 1.08992 * 109.47546 * 60.00019 * 5 3 2 7 7 C 1.52998 * 109.47171 * 299.99738 * 5 3 2 8 8 C 1.53008 * 109.47034 * 180.02562 * 5 3 2 9 9 N 1.46899 * 109.46792 * 185.00086 * 8 5 3 10 10 C 1.46891 * 111.00391 * 66.04467 * 9 8 5 11 11 C 1.46904 * 110.99966 * 189.99864 * 9 8 5 12 12 C 1.50693 * 109.47328 * 169.99737 * 11 9 8 13 13 C 1.38293 * 119.92589 * 89.99967 * 12 11 9 14 14 C 1.38102 * 120.07322 * 180.02562 * 13 12 11 15 15 C 1.38904 * 119.92935 * 0.02562 * 14 13 12 16 16 N 1.39674 * 120.07613 * 179.97438 * 15 14 13 17 17 C 1.46501 * 120.00040 * 359.97438 * 16 15 14 18 18 C 1.46506 * 119.99862 * 179.97438 * 16 15 14 19 19 C 1.50699 * 109.46928 * 90.00234 * 18 16 15 20 20 H 1.08003 * 119.99963 * 0.02562 * 19 18 16 21 21 C 1.37873 * 119.99865 * 179.97438 * 19 18 16 22 22 N 1.31514 * 120.00518 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99987 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46922 * 90.00621 * 23 21 19 25 25 H 1.48500 * 109.47411 * 210.00442 * 23 21 19 26 26 H 1.48494 * 109.47378 * 330.00637 * 23 21 19 27 27 C 1.38916 * 119.85171 * 0.24753 * 15 14 13 28 28 C 1.38110 * 119.91982 * 359.49716 * 27 15 14 29 29 H 1.09000 * 109.47183 * 60.00167 * 1 2 3 30 30 H 1.09004 * 109.47320 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46981 * 299.99992 * 1 2 3 32 32 H 0.96999 * 120.00154 * 179.97438 * 2 1 3 33 33 H 1.09004 * 109.46967 * 59.99792 * 7 5 3 34 34 H 1.09000 * 109.47580 * 180.02562 * 7 5 3 35 35 H 1.09003 * 109.47261 * 300.00056 * 7 5 3 36 36 H 1.08997 * 109.47267 * 64.99776 * 8 5 3 37 37 H 1.09002 * 109.46709 * 304.99752 * 8 5 3 38 38 H 1.09003 * 109.47426 * 183.95186 * 10 9 8 39 39 H 1.09007 * 109.47349 * 303.95116 * 10 9 8 40 40 H 1.09002 * 109.47902 * 63.95169 * 10 9 8 41 41 H 1.08999 * 109.46906 * 49.99951 * 11 9 8 42 42 H 1.09000 * 109.46737 * 289.99782 * 11 9 8 43 43 H 1.08001 * 119.95958 * 0.02562 * 13 12 11 44 44 H 1.08005 * 120.03290 * 179.97438 * 14 13 12 45 45 H 1.08999 * 109.46532 * 269.99757 * 17 16 15 46 46 H 1.09000 * 109.46877 * 29.99781 * 17 16 15 47 47 H 1.09000 * 109.47251 * 149.99887 * 17 16 15 48 48 H 1.09004 * 109.47073 * 210.00062 * 18 16 15 49 49 H 1.09000 * 109.47212 * 330.00145 * 18 16 15 50 50 H 0.96992 * 120.00316 * 179.97438 * 22 21 19 51 51 H 1.07998 * 120.04002 * 179.72626 * 27 15 14 52 52 H 1.07995 * 119.95873 * 180.25408 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6459 1.1672 -0.0006 6 1 4.0089 0.6536 -0.8907 7 6 4.1563 0.4457 1.2483 8 6 4.1559 2.6097 0.0002 9 7 5.6198 2.6115 -0.1211 10 6 6.0404 2.0929 -1.4295 11 6 6.1658 3.9551 0.1128 12 6 7.6665 3.8751 0.2243 13 6 8.4503 4.0051 -0.9076 14 6 9.8259 3.9318 -0.8090 15 6 10.4220 3.7267 0.4288 16 7 11.8129 3.6515 0.5320 17 6 12.6448 3.7884 -0.6661 18 6 12.4398 3.4358 1.8384 19 6 12.5939 1.9568 2.0835 20 1 12.2588 1.2485 1.3403 21 6 13.1637 1.5081 3.2560 22 7 13.5723 2.3706 4.1609 23 14 13.3541 -0.3252 3.5602 24 1 14.6682 -0.7795 3.0388 25 1 13.2799 -0.5954 5.0185 26 1 12.2656 -1.0580 2.8650 27 6 9.6315 3.5909 1.5630 28 6 8.2567 3.6705 1.4580 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.9500 -0.8400 0.0004 33 1 3.7930 -0.5820 1.2483 34 1 5.2463 0.4461 1.2482 35 1 3.7934 0.9594 2.1386 36 1 3.8678 3.0965 0.9320 37 1 3.7209 3.1493 -0.8412 38 1 7.1284 2.0393 -1.4665 39 1 5.6224 1.0970 -1.5770 40 1 5.6824 2.7573 -2.2160 41 1 5.7538 4.3588 1.0376 42 1 5.8975 4.6062 -0.7192 43 1 7.9862 4.1641 -1.8697 44 1 10.4374 4.0329 -1.6934 45 1 12.8070 2.8061 -1.1098 46 1 12.1415 4.4338 -1.3860 47 1 13.6047 4.2271 -0.3937 48 1 13.4209 3.9107 1.8535 49 1 11.8139 3.8700 2.6180 50 1 13.9728 2.0548 4.9859 51 1 10.0916 3.4270 2.5262 52 1 7.6417 3.5691 2.3400 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093899394.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:27 Heat of formation + Delta-G solvation = -21.732996 kcal Electronic energy + Delta-G solvation = -28468.768288 eV Core-core repulsion = 24660.349808 eV Total energy + Delta-G solvation = -3808.418480 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -41.04343 -40.47689 -38.67791 -36.99158 -35.64869 -34.82621 -34.12772 -31.88333 -31.28973 -29.63938 -28.28023 -27.92527 -27.53593 -26.34487 -24.92948 -23.67433 -22.94562 -22.16362 -20.95427 -20.77396 -18.62786 -18.44599 -18.04685 -17.07428 -16.90728 -16.68159 -16.39888 -16.10175 -15.94875 -15.74573 -15.29532 -15.24058 -14.81372 -14.61631 -14.35739 -14.27287 -14.12542 -13.98065 -13.77592 -13.32693 -13.17714 -13.13587 -13.08472 -13.03135 -12.97858 -12.67118 -12.61149 -12.53603 -12.47380 -12.28169 -12.09915 -11.90551 -11.73053 -11.62622 -11.36645 -10.81714 -10.62334 -10.38179 -10.13072 -9.62164 -9.18116 -8.33963 -7.77467 -6.35255 0.74529 0.86162 1.37921 1.39216 1.50445 1.60907 2.23663 2.36099 2.65754 2.97819 3.08007 3.40219 3.72887 3.88665 4.05492 4.10616 4.12084 4.25616 4.36515 4.42679 4.44638 4.50808 4.53548 4.60674 4.64909 4.67786 4.74463 4.76704 4.86405 4.86937 4.90048 4.94213 4.96211 4.99803 5.03708 5.09623 5.14787 5.20276 5.21741 5.36027 5.43740 5.46350 5.61824 5.69212 5.72389 5.95474 6.09434 6.13200 6.21139 6.25343 6.52467 6.53281 6.84927 6.96488 7.24221 7.36420 8.85121 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.013351 B = 0.002392 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.770420 B =11704.542422 C =13113.315159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.724 5.724 3 C 0.515 3.485 4 O -0.587 6.587 5 C -0.100 4.100 6 H 0.116 0.884 7 C -0.130 4.130 8 C 0.079 3.921 9 N -0.540 5.540 10 C 0.019 3.981 11 C 0.114 3.886 12 C -0.150 4.150 13 C -0.059 4.059 14 C -0.216 4.216 15 C 0.212 3.788 16 N -0.632 5.632 17 C 0.100 3.900 18 C 0.266 3.734 19 C -0.538 4.538 20 H 0.048 0.952 21 C 0.011 3.989 22 N -0.927 5.927 23 Si 0.962 3.038 24 H -0.271 1.271 25 H -0.279 1.279 26 H -0.271 1.271 27 C -0.215 4.215 28 C -0.055 4.055 29 H 0.049 0.951 30 H 0.110 0.890 31 H 0.047 0.953 32 H 0.418 0.582 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.046 0.954 36 H 0.067 0.933 37 H 0.031 0.969 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.030 0.970 41 H 0.077 0.923 42 H 0.047 0.953 43 H 0.138 0.862 44 H 0.132 0.868 45 H 0.039 0.961 46 H 0.084 0.916 47 H 0.060 0.940 48 H 0.009 0.991 49 H 0.011 0.989 50 H 0.267 0.733 51 H 0.094 0.906 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.962 -4.634 -12.284 25.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.376 5.376 3 C 0.302 3.698 4 O -0.467 6.467 5 C -0.121 4.121 6 H 0.134 0.866 7 C -0.187 4.187 8 C -0.049 4.049 9 N -0.264 5.264 10 C -0.129 4.129 11 C -0.013 4.013 12 C -0.153 4.153 13 C -0.078 4.078 14 C -0.238 4.238 15 C 0.108 3.892 16 N -0.340 5.340 17 C -0.043 4.043 18 C 0.144 3.856 19 C -0.577 4.577 20 H 0.067 0.933 21 C -0.188 4.188 22 N -0.567 5.567 23 Si 0.786 3.214 24 H -0.197 1.197 25 H -0.205 1.205 26 H -0.195 1.195 27 C -0.238 4.238 28 C -0.074 4.074 29 H 0.068 0.932 30 H 0.128 0.872 31 H 0.066 0.934 32 H 0.255 0.745 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.086 0.914 37 H 0.050 0.950 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.049 0.951 41 H 0.096 0.904 42 H 0.065 0.935 43 H 0.155 0.845 44 H 0.150 0.850 45 H 0.058 0.942 46 H 0.102 0.898 47 H 0.079 0.921 48 H 0.027 0.973 49 H 0.029 0.971 50 H 0.076 0.924 51 H 0.112 0.888 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -21.916 -4.205 -11.738 25.215 hybrid contribution 0.522 -0.551 0.175 0.779 sum -21.394 -4.755 -11.563 24.779 Atomic orbital electron populations 1.21662 0.78980 1.04160 1.01306 1.45777 1.08322 1.08771 1.74685 1.20999 0.90721 0.83566 0.74515 1.90686 1.71483 1.33066 1.51480 1.21253 0.89675 0.98311 1.02878 0.86611 1.21633 1.02717 0.99705 0.94676 1.21764 0.86744 0.95193 1.01185 1.61936 1.08761 1.23778 1.31898 1.22512 1.01715 1.00268 0.88380 1.20790 0.90280 0.88947 1.01263 1.19391 0.94944 1.08153 0.92823 1.20867 0.92138 0.96670 0.98129 1.20752 0.95732 1.12046 0.95309 1.18211 0.83584 0.92897 0.94533 1.46942 1.02632 1.76013 1.08376 1.21585 0.94851 1.00630 0.87233 1.18796 0.91651 0.94887 0.80257 1.21754 1.39790 0.93199 1.02977 0.93346 1.25793 0.94929 1.02556 0.95557 1.70035 1.41797 1.35904 1.08963 0.85499 0.78686 0.79762 0.77413 1.19654 1.20454 1.19542 1.20765 0.94587 1.10966 0.97456 1.20754 0.92641 0.96111 0.97871 0.93213 0.87181 0.93407 0.74530 0.90542 0.90981 0.93461 0.91410 0.95037 0.91661 0.90292 0.95113 0.90419 0.93526 0.84454 0.84987 0.94237 0.89780 0.92110 0.97282 0.97145 0.92438 0.88786 0.86164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.83 10.70 127.77 1.37 2.20 16 2 N -0.72 -8.47 5.61 -484.51 -2.72 -11.18 16 3 C 0.52 9.73 7.15 87.66 0.63 10.35 16 4 O -0.59 -16.35 15.92 -3.04 -0.05 -16.39 16 5 C -0.10 -1.61 2.65 -11.54 -0.03 -1.64 16 6 H 0.12 1.47 6.26 -2.39 -0.01 1.45 16 7 C -0.13 -1.98 8.98 71.98 0.65 -1.33 16 8 C 0.08 1.64 3.69 86.31 0.32 1.96 16 9 N -0.54 -11.76 4.21 -927.05 -3.90 -15.66 16 10 C 0.02 0.37 8.94 127.69 1.14 1.51 16 11 C 0.11 2.68 5.11 85.55 0.44 3.12 16 12 C -0.15 -4.34 4.89 -19.84 -0.10 -4.44 16 13 C -0.06 -1.64 7.95 22.25 0.18 -1.46 16 14 C -0.22 -7.02 9.21 22.40 0.21 -6.81 16 15 C 0.21 8.66 6.55 38.21 0.25 8.91 16 16 N -0.63 -27.72 2.99 -726.54 -2.17 -29.89 16 17 C 0.10 3.47 10.23 127.77 1.31 4.78 16 18 C 0.27 14.06 4.95 85.63 0.42 14.48 16 19 C -0.54 -30.43 9.39 25.60 0.24 -30.19 16 20 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 21 C 0.01 0.60 5.46 84.65 0.46 1.07 16 22 N -0.93 -54.71 13.29 21.45 0.28 -54.42 16 23 Si 0.96 44.20 29.54 68.60 2.03 46.23 16 24 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 25 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 26 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 27 C -0.21 -9.06 9.20 22.40 0.21 -8.85 16 28 C -0.05 -1.88 9.69 22.25 0.22 -1.67 16 29 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.42 2.26 8.25 -92.71 -0.76 1.50 16 33 H 0.08 0.76 7.56 -2.39 -0.02 0.74 16 34 H 0.07 1.35 7.75 -2.39 -0.02 1.34 16 35 H 0.05 0.82 8.14 -2.39 -0.02 0.81 16 36 H 0.07 1.56 7.93 -2.39 -0.02 1.54 16 37 H 0.03 0.71 7.93 -2.39 -0.02 0.69 16 38 H 0.06 1.46 6.16 -2.39 -0.01 1.45 16 39 H 0.08 1.24 6.21 -2.38 -0.01 1.22 16 40 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.08 1.80 7.87 -2.39 -0.02 1.78 16 42 H 0.05 1.00 8.06 -2.39 -0.02 0.98 16 43 H 0.14 2.96 8.03 -2.91 -0.02 2.94 16 44 H 0.13 3.71 6.14 -2.91 -0.02 3.69 16 45 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.08 2.34 6.20 -2.39 -0.01 2.33 16 47 H 0.06 2.06 7.89 -2.39 -0.02 2.04 16 48 H 0.01 0.51 7.89 -2.38 -0.02 0.49 16 49 H 0.01 0.60 6.21 -2.39 -0.01 0.59 16 50 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 51 H 0.09 4.59 6.15 -2.91 -0.02 4.57 16 52 H 0.12 3.82 8.06 -2.91 -0.02 3.79 16 Total: -1.00 -71.40 413.16 1.52 -69.89 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: 0.14 Total: 19.46 kcal Atomic # 6 Polarization: -15.93 SS G_CDS: 7.90 Total: -8.03 kcal Atomic # 7 Polarization: -102.65 SS G_CDS: -8.50 Total: -111.15 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -0.05 Total: -16.39 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -71.40 1.52 -69.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093899394.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.156 kcal (2) G-P(sol) polarization free energy of solvation -71.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds