Wall clock time and date at job start Tue Mar 31 2020 17:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.47166 * 2 1 4 4 C 1.50697 * 109.47405 * 120.00296 * 2 1 3 5 5 O 1.21283 * 120.00052 * 107.22253 * 4 2 1 6 6 N 1.34776 * 119.99784 * 287.22134 * 4 2 1 7 7 C 1.46497 * 120.00147 * 0.02562 * 6 4 2 8 8 C 1.46508 * 120.00003 * 179.97438 * 6 4 2 9 9 C 1.50699 * 109.46710 * 90.00325 * 8 6 4 10 10 H 1.08002 * 120.00420 * 359.97438 * 9 8 6 11 11 C 1.37881 * 119.99788 * 180.02562 * 9 8 6 12 12 N 1.31512 * 119.99945 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 119.99965 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47221 * 60.00124 * 13 11 9 15 15 H 1.48503 * 109.47063 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47356 * 300.00028 * 13 11 9 17 17 N 1.46901 * 109.47201 * 240.00409 * 2 1 3 18 18 C 1.46900 * 111.00221 * 76.46319 * 17 2 1 19 19 C 1.46896 * 110.99947 * 312.50889 * 17 2 1 20 20 C 1.52998 * 109.47408 * 190.00315 * 19 17 2 21 21 N 1.46500 * 109.47649 * 179.97438 * 20 19 17 22 22 C 1.46499 * 120.00073 * 270.00317 * 21 20 19 23 23 C 1.39674 * 120.00149 * 89.99336 * 21 20 19 24 24 C 1.38919 * 120.07295 * 359.72810 * 23 21 20 25 25 C 1.38103 * 119.92349 * 179.76755 * 24 23 21 26 26 C 1.38289 * 120.07333 * 0.50670 * 25 24 23 27 27 C 1.38285 * 120.15009 * 359.74621 * 26 25 24 28 28 C 1.38095 * 120.07525 * 0.02562 * 27 26 25 29 29 H 1.08994 * 109.47019 * 60.00062 * 1 2 3 30 30 H 1.09003 * 109.46516 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46800 * 299.99581 * 1 2 3 32 32 H 1.09006 * 109.47474 * 89.99559 * 7 6 4 33 33 H 1.09004 * 109.46910 * 209.99561 * 7 6 4 34 34 H 1.09001 * 109.47260 * 329.99634 * 7 6 4 35 35 H 1.08996 * 109.46921 * 210.00244 * 8 6 4 36 36 H 1.08995 * 109.46891 * 330.00433 * 8 6 4 37 37 H 0.97003 * 120.00273 * 180.02562 * 12 11 9 38 38 H 1.08996 * 109.46876 * 289.93518 * 18 17 2 39 39 H 1.09002 * 109.47446 * 49.93434 * 18 17 2 40 40 H 1.08999 * 109.47324 * 169.93488 * 18 17 2 41 41 H 1.09008 * 109.47021 * 309.99751 * 19 17 2 42 42 H 1.08999 * 109.47430 * 69.99701 * 19 17 2 43 43 H 1.09008 * 109.47084 * 299.99823 * 20 19 17 44 44 H 1.08999 * 109.47326 * 59.99323 * 20 19 17 45 45 H 1.09000 * 109.47475 * 89.99118 * 22 21 20 46 46 H 1.09003 * 109.46817 * 209.99860 * 22 21 20 47 47 H 1.09002 * 109.46794 * 329.99420 * 22 21 20 48 48 H 1.07997 * 120.03502 * 0.02562 * 24 23 21 49 49 H 1.07994 * 119.96391 * 180.25665 * 25 24 23 50 50 H 1.08003 * 119.92365 * 179.72567 * 26 25 24 51 51 H 1.08003 * 119.96231 * 179.97438 * 27 26 25 52 52 H 1.08009 * 120.04061 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.5278 -1.8133 1.1340 6 7 1.9312 -0.1202 2.4378 7 6 1.3324 1.2117 2.5542 8 6 2.4191 -0.8111 3.6341 9 6 3.8661 -0.4579 3.8630 10 1 4.3719 0.2137 3.1850 11 6 4.5447 -0.9929 4.9375 12 7 3.9290 -1.8110 5.7627 13 14 6.3385 -0.5556 5.2209 14 1 6.4664 0.9117 5.4104 15 1 6.8331 -1.2558 6.4335 16 1 7.1421 -0.9746 4.0444 17 7 2.0197 -0.6924 -1.1995 18 6 1.8926 0.1607 -2.3886 19 6 1.3215 -1.9705 -1.3914 20 6 2.0196 -2.7729 -2.4913 21 7 1.3237 -4.0478 -2.6823 22 6 1.7256 -5.2249 -1.9082 23 6 0.2770 -4.1412 -3.6024 24 6 -0.1092 -3.0245 -4.3330 25 6 -1.1414 -3.1215 -5.2454 26 6 -1.7973 -4.3257 -5.4245 27 6 -1.4188 -5.4379 -4.6950 28 6 -0.3844 -5.3491 -3.7844 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.2586 1.1146 2.7145 33 1 1.7794 1.7386 3.3973 34 1 1.5136 1.7730 1.6376 35 1 1.8290 -0.5035 4.4973 36 1 2.3256 -1.8881 3.4951 37 1 4.4062 -2.1872 6.5189 38 1 0.8389 0.2743 -2.6432 39 1 2.3238 1.1400 -2.1811 40 1 2.4206 -0.2993 -3.2239 41 1 1.3396 -2.5378 -0.4607 42 1 0.2880 -1.7801 -1.6808 43 1 2.0016 -2.2057 -3.4220 44 1 3.0531 -2.9633 -2.2019 45 1 1.1553 -5.2614 -0.9800 46 1 1.5311 -6.1260 -2.4899 47 1 2.7894 -5.1630 -1.6789 48 1 0.3999 -2.0828 -4.1907 49 1 -1.4394 -2.2549 -5.8168 50 1 -2.6071 -4.3977 -6.1354 51 1 -1.9334 -6.3768 -4.8369 52 1 -0.0895 -6.2180 -3.2146 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107682912.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:49 Heat of formation + Delta-G solvation = 21.988072 kcal Electronic energy + Delta-G solvation = -29558.232395 eV Core-core repulsion = 25751.709803 eV Total energy + Delta-G solvation = -3806.522592 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.96511 -39.42147 -37.33543 -35.99417 -34.75052 -32.71279 -31.61058 -30.86779 -30.01464 -28.96447 -27.69427 -26.38199 -26.01213 -25.23535 -24.03301 -22.75962 -22.13578 -20.94682 -20.25451 -18.33012 -17.74653 -16.70421 -16.40072 -16.19162 -15.62446 -15.36831 -15.21248 -14.85337 -14.61020 -14.43207 -14.24978 -13.99760 -13.85284 -13.58753 -13.38293 -13.28096 -12.82026 -12.63836 -12.49235 -12.28007 -12.14193 -12.08572 -11.93023 -11.86317 -11.68602 -11.53304 -11.44922 -11.21432 -11.15831 -10.91469 -10.85272 -10.59947 -10.54792 -10.13713 -9.88433 -9.61272 -8.99430 -8.81964 -8.41992 -8.12563 -7.60127 -7.31948 -6.02891 -4.07358 1.37215 1.56095 3.00984 3.32800 3.37054 3.39073 3.47284 3.77177 3.84627 4.26980 4.47097 4.75989 4.83638 4.95857 4.97165 5.03306 5.12923 5.16586 5.22030 5.26889 5.31164 5.33728 5.39065 5.41644 5.42909 5.52806 5.57376 5.58587 5.68183 5.75207 5.76573 5.80064 5.81987 5.91745 5.93743 5.98294 6.07882 6.20350 6.22720 6.28652 6.42924 6.56646 6.81431 6.94672 7.06292 7.16482 7.30484 7.45429 7.48460 7.57009 7.93887 8.25248 8.45242 8.92667 9.15451 9.57714 11.05130 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.016754 B = 0.002663 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.795749 B =10512.406833 C =11256.339089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.064 3.936 3 H 0.100 0.900 4 C 0.514 3.486 5 O -0.525 6.525 6 N -0.603 5.603 7 C 0.083 3.917 8 C 0.248 3.752 9 C -0.524 4.524 10 H 0.056 0.944 11 C 0.061 3.939 12 N -0.896 5.896 13 Si 0.898 3.102 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.276 1.276 17 N -0.517 5.517 18 C 0.021 3.979 19 C 0.035 3.965 20 C 0.129 3.871 21 N -0.626 5.626 22 C 0.092 3.908 23 C 0.222 3.778 24 C -0.200 4.200 25 C -0.073 4.073 26 C -0.188 4.188 27 C -0.073 4.073 28 C -0.202 4.202 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.044 0.956 33 H 0.073 0.927 34 H 0.056 0.944 35 H 0.031 0.969 36 H 0.042 0.958 37 H 0.263 0.737 38 H 0.025 0.975 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.098 0.902 42 H 0.032 0.968 43 H 0.070 0.930 44 H 0.085 0.915 45 H 0.051 0.949 46 H 0.065 0.935 47 H 0.071 0.929 48 H 0.119 0.881 49 H 0.117 0.883 50 H 0.114 0.886 51 H 0.117 0.883 52 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.985 0.321 -20.205 23.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.048 4.048 3 H 0.118 0.882 4 C 0.299 3.701 5 O -0.402 6.402 6 N -0.336 5.336 7 C -0.061 4.061 8 C 0.128 3.872 9 C -0.563 4.563 10 H 0.075 0.925 11 C -0.141 4.141 12 N -0.535 5.535 13 Si 0.725 3.275 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.201 1.201 17 N -0.240 5.240 18 C -0.127 4.127 19 C -0.093 4.093 20 C 0.006 3.994 21 N -0.335 5.335 22 C -0.051 4.051 23 C 0.119 3.881 24 C -0.223 4.223 25 C -0.092 4.092 26 C -0.208 4.208 27 C -0.092 4.092 28 C -0.224 4.224 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.062 0.938 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.049 0.951 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.044 0.956 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.116 0.884 42 H 0.051 0.949 43 H 0.088 0.912 44 H 0.103 0.897 45 H 0.069 0.931 46 H 0.084 0.916 47 H 0.090 0.910 48 H 0.137 0.863 49 H 0.135 0.865 50 H 0.132 0.868 51 H 0.135 0.865 52 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.004 -0.489 -19.843 22.227 hybrid contribution 0.139 0.615 0.262 0.683 sum -9.865 0.126 -19.581 21.926 Atomic orbital electron populations 1.22395 0.95654 1.03095 1.02776 1.21713 0.93973 0.98545 0.90616 0.88222 1.20033 0.79672 0.86567 0.83840 1.90613 1.43976 1.20281 1.85281 1.48131 1.59490 1.17478 1.08524 1.21691 0.97015 0.85256 1.02186 1.19253 0.94092 0.93663 0.80152 1.21397 0.96181 1.28291 1.10426 0.92531 1.24933 0.98414 0.94926 0.95848 1.69922 1.36936 1.31273 1.15405 0.86565 0.84922 0.78403 0.77565 1.20284 1.21214 1.20149 1.61719 1.56772 1.03747 1.01775 1.22489 0.99475 0.97638 0.93127 1.22701 0.94632 0.90682 1.01333 1.21416 0.96434 0.83583 0.97977 1.46501 1.35120 1.10284 1.41624 1.21684 1.00841 0.87323 0.95223 1.17909 0.87597 0.93817 0.88752 1.20695 1.02066 0.97849 1.01649 1.20857 0.94574 0.97361 0.96386 1.20849 1.02942 0.93554 1.03475 1.20859 0.95516 0.98147 0.94644 1.20708 1.00571 0.96797 1.04371 0.92097 0.91777 0.91056 0.93801 0.90788 0.92562 0.95136 0.93952 0.92702 0.95603 0.91399 0.91243 0.88355 0.94947 0.91184 0.89660 0.93058 0.91631 0.91018 0.86285 0.86535 0.86817 0.86491 0.86088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.26 8.20 37.16 0.30 -1.96 16 2 C 0.06 0.96 1.90 -68.86 -0.13 0.83 16 3 H 0.10 1.36 6.36 -51.92 -0.33 1.03 16 4 C 0.51 10.59 6.80 -10.99 -0.07 10.52 16 5 O -0.53 -12.98 14.00 5.56 0.08 -12.90 16 6 N -0.60 -12.73 2.86 -182.95 -0.52 -13.25 16 7 C 0.08 1.29 9.18 59.85 0.55 1.84 16 8 C 0.25 6.49 5.16 -5.19 -0.03 6.46 16 9 C -0.52 -14.93 9.39 -34.44 -0.32 -15.25 16 10 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 11 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 12 N -0.90 -26.74 13.29 55.43 0.74 -26.01 16 13 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 15 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 17 N -0.52 -7.47 4.44 -236.28 -1.05 -8.51 16 18 C 0.02 0.22 8.94 60.06 0.54 0.76 16 19 C 0.04 0.51 3.77 -3.83 -0.01 0.49 16 20 C 0.13 1.64 5.12 -4.04 -0.02 1.62 16 21 N -0.63 -7.73 3.01 -179.61 -0.54 -8.27 16 22 C 0.09 1.04 10.23 59.85 0.61 1.65 16 23 C 0.22 2.70 6.55 -83.78 -0.55 2.15 16 24 C -0.20 -2.26 9.21 -39.38 -0.36 -2.63 16 25 C -0.07 -0.74 10.04 -39.61 -0.40 -1.13 16 26 C -0.19 -1.84 10.04 -39.55 -0.40 -2.24 16 27 C -0.07 -0.73 10.04 -39.62 -0.40 -1.13 16 28 C -0.20 -2.26 9.21 -39.38 -0.36 -2.62 16 29 H 0.06 0.64 7.19 -51.93 -0.37 0.26 16 30 H 0.06 0.89 6.53 -51.93 -0.34 0.55 16 31 H 0.07 0.84 6.05 -51.93 -0.31 0.53 16 32 H 0.04 0.59 7.28 -51.93 -0.38 0.21 16 33 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 34 H 0.06 0.72 6.10 -51.93 -0.32 0.40 16 35 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 36 H 0.04 1.25 7.42 -51.93 -0.39 0.87 16 37 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 38 H 0.03 0.25 7.22 -51.93 -0.38 -0.13 16 39 H 0.07 0.67 7.85 -51.93 -0.41 0.26 16 40 H 0.07 0.67 6.77 -51.93 -0.35 0.32 16 41 H 0.10 1.77 5.99 -51.92 -0.31 1.46 16 42 H 0.03 0.45 6.79 -51.93 -0.35 0.10 16 43 H 0.07 0.79 4.76 -51.92 -0.25 0.54 16 44 H 0.09 1.18 7.89 -51.93 -0.41 0.77 16 45 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 46 H 0.07 0.61 6.20 -51.93 -0.32 0.29 16 47 H 0.07 0.80 7.89 -51.93 -0.41 0.39 16 48 H 0.12 1.26 6.15 -52.49 -0.32 0.94 16 49 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 50 H 0.11 0.89 8.06 -52.48 -0.42 0.46 16 51 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 52 H 0.12 1.21 6.14 -52.48 -0.32 0.88 16 LS Contribution 402.85 15.07 6.07 6.07 Total: -1.00 -33.42 402.85 -9.74 -43.17 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -8.34 Total: 1.71 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -1.15 Total: 1.01 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: -1.37 Total: -56.04 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: 0.08 Total: -12.90 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.42 -9.74 -43.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107682912.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.154 kcal (2) G-P(sol) polarization free energy of solvation -33.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds