Wall clock time and date at job start Tue Mar 31 2020 17:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.47166 * 2 1 4 4 C 1.50697 * 109.47405 * 120.00296 * 2 1 3 5 5 O 1.21283 * 120.00052 * 107.22253 * 4 2 1 6 6 N 1.34776 * 119.99784 * 287.22134 * 4 2 1 7 7 C 1.46497 * 120.00147 * 0.02562 * 6 4 2 8 8 C 1.46508 * 120.00003 * 179.97438 * 6 4 2 9 9 C 1.50699 * 109.46710 * 90.00325 * 8 6 4 10 10 H 1.08002 * 120.00420 * 359.97438 * 9 8 6 11 11 C 1.37881 * 119.99788 * 180.02562 * 9 8 6 12 12 N 1.31512 * 119.99945 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 119.99965 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47221 * 60.00124 * 13 11 9 15 15 H 1.48503 * 109.47063 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47356 * 300.00028 * 13 11 9 17 17 N 1.46901 * 109.47201 * 240.00409 * 2 1 3 18 18 C 1.46900 * 111.00221 * 76.46319 * 17 2 1 19 19 C 1.46896 * 110.99947 * 312.50889 * 17 2 1 20 20 C 1.52998 * 109.47408 * 190.00315 * 19 17 2 21 21 N 1.46500 * 109.47649 * 179.97438 * 20 19 17 22 22 C 1.46499 * 120.00073 * 270.00317 * 21 20 19 23 23 C 1.39674 * 120.00149 * 89.99336 * 21 20 19 24 24 C 1.38919 * 120.07295 * 359.72810 * 23 21 20 25 25 C 1.38103 * 119.92349 * 179.76755 * 24 23 21 26 26 C 1.38289 * 120.07333 * 0.50670 * 25 24 23 27 27 C 1.38285 * 120.15009 * 359.74621 * 26 25 24 28 28 C 1.38095 * 120.07525 * 0.02562 * 27 26 25 29 29 H 1.08994 * 109.47019 * 60.00062 * 1 2 3 30 30 H 1.09003 * 109.46516 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46800 * 299.99581 * 1 2 3 32 32 H 1.09006 * 109.47474 * 89.99559 * 7 6 4 33 33 H 1.09004 * 109.46910 * 209.99561 * 7 6 4 34 34 H 1.09001 * 109.47260 * 329.99634 * 7 6 4 35 35 H 1.08996 * 109.46921 * 210.00244 * 8 6 4 36 36 H 1.08995 * 109.46891 * 330.00433 * 8 6 4 37 37 H 0.97003 * 120.00273 * 180.02562 * 12 11 9 38 38 H 1.08996 * 109.46876 * 289.93518 * 18 17 2 39 39 H 1.09002 * 109.47446 * 49.93434 * 18 17 2 40 40 H 1.08999 * 109.47324 * 169.93488 * 18 17 2 41 41 H 1.09008 * 109.47021 * 309.99751 * 19 17 2 42 42 H 1.08999 * 109.47430 * 69.99701 * 19 17 2 43 43 H 1.09008 * 109.47084 * 299.99823 * 20 19 17 44 44 H 1.08999 * 109.47326 * 59.99323 * 20 19 17 45 45 H 1.09000 * 109.47475 * 89.99118 * 22 21 20 46 46 H 1.09003 * 109.46817 * 209.99860 * 22 21 20 47 47 H 1.09002 * 109.46794 * 329.99420 * 22 21 20 48 48 H 1.07997 * 120.03502 * 0.02562 * 24 23 21 49 49 H 1.07994 * 119.96391 * 180.25665 * 25 24 23 50 50 H 1.08003 * 119.92365 * 179.72567 * 26 25 24 51 51 H 1.08003 * 119.96231 * 179.97438 * 27 26 25 52 52 H 1.08009 * 120.04061 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.5278 -1.8133 1.1340 6 7 1.9312 -0.1202 2.4378 7 6 1.3324 1.2117 2.5542 8 6 2.4191 -0.8111 3.6341 9 6 3.8661 -0.4579 3.8630 10 1 4.3719 0.2137 3.1850 11 6 4.5447 -0.9929 4.9375 12 7 3.9290 -1.8110 5.7627 13 14 6.3385 -0.5556 5.2209 14 1 6.4664 0.9117 5.4104 15 1 6.8331 -1.2558 6.4335 16 1 7.1421 -0.9746 4.0444 17 7 2.0197 -0.6924 -1.1995 18 6 1.8926 0.1607 -2.3886 19 6 1.3215 -1.9705 -1.3914 20 6 2.0196 -2.7729 -2.4913 21 7 1.3237 -4.0478 -2.6823 22 6 1.7256 -5.2249 -1.9082 23 6 0.2770 -4.1412 -3.6024 24 6 -0.1092 -3.0245 -4.3330 25 6 -1.1414 -3.1215 -5.2454 26 6 -1.7973 -4.3257 -5.4245 27 6 -1.4188 -5.4379 -4.6950 28 6 -0.3844 -5.3491 -3.7844 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.2586 1.1146 2.7145 33 1 1.7794 1.7386 3.3973 34 1 1.5136 1.7730 1.6376 35 1 1.8290 -0.5035 4.4973 36 1 2.3256 -1.8881 3.4951 37 1 4.4062 -2.1872 6.5189 38 1 0.8389 0.2743 -2.6432 39 1 2.3238 1.1400 -2.1811 40 1 2.4206 -0.2993 -3.2239 41 1 1.3396 -2.5378 -0.4607 42 1 0.2880 -1.7801 -1.6808 43 1 2.0016 -2.2057 -3.4220 44 1 3.0531 -2.9633 -2.2019 45 1 1.1553 -5.2614 -0.9800 46 1 1.5311 -6.1260 -2.4899 47 1 2.7894 -5.1630 -1.6789 48 1 0.3999 -2.0828 -4.1907 49 1 -1.4394 -2.2549 -5.8168 50 1 -2.6071 -4.3977 -6.1354 51 1 -1.9334 -6.3768 -4.8369 52 1 -0.0895 -6.2180 -3.2146 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107682912.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:49 Heat of formation + Delta-G solvation = 0.985142 kcal Electronic energy + Delta-G solvation = -29559.143150 eV Core-core repulsion = 25751.709803 eV Total energy + Delta-G solvation = -3807.433348 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.22342 -40.45452 -38.56181 -36.96120 -36.49563 -34.77663 -32.72246 -31.79619 -30.93317 -29.94786 -29.51160 -27.46817 -27.29539 -26.40632 -25.46486 -24.20057 -23.01026 -22.10138 -21.27090 -19.79370 -18.70140 -18.61117 -17.99988 -17.43317 -16.80232 -16.46148 -16.38403 -16.22790 -15.94650 -15.75620 -15.31573 -15.11058 -14.99922 -14.60502 -14.46040 -14.30596 -14.21899 -13.93420 -13.56103 -13.48569 -13.46589 -13.27425 -13.21124 -13.05181 -12.90557 -12.84953 -12.71766 -12.54088 -12.51993 -12.34791 -12.21566 -12.16481 -11.82360 -11.70836 -11.55734 -10.77581 -10.64664 -10.36836 -9.78163 -9.40746 -9.19709 -8.22394 -8.21370 -6.37204 0.58352 0.75213 1.35516 1.40070 1.47297 1.87915 2.09202 2.29691 2.42867 3.03050 3.06737 3.13390 3.68317 3.85706 3.96058 3.99204 4.02368 4.15112 4.22061 4.30563 4.38357 4.38944 4.44613 4.50090 4.56871 4.59308 4.62274 4.67020 4.68249 4.74429 4.78868 4.81254 4.87884 4.91267 4.96842 5.00702 5.04383 5.10367 5.15165 5.19617 5.22386 5.41077 5.56718 5.65448 5.79049 5.84451 5.95605 6.05102 6.06713 6.12381 6.35810 6.61059 6.70855 6.83891 7.29222 7.55827 8.84312 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.016754 B = 0.002663 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.795749 B =10512.406833 C =11256.339089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.076 3.924 3 H 0.125 0.875 4 C 0.501 3.499 5 O -0.579 6.579 6 N -0.612 5.612 7 C 0.077 3.923 8 C 0.262 3.738 9 C -0.540 4.540 10 H 0.052 0.948 11 C 0.007 3.993 12 N -0.930 5.930 13 Si 0.967 3.033 14 H -0.259 1.259 15 H -0.278 1.278 16 H -0.279 1.279 17 N -0.540 5.540 18 C 0.022 3.978 19 C 0.051 3.949 20 C 0.138 3.862 21 N -0.634 5.634 22 C 0.094 3.906 23 C 0.200 3.800 24 C -0.211 4.211 25 C -0.077 4.077 26 C -0.190 4.190 27 C -0.079 4.079 28 C -0.216 4.216 29 H 0.092 0.908 30 H 0.042 0.958 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.093 0.907 35 H 0.022 0.978 36 H -0.006 1.006 37 H 0.267 0.733 38 H 0.043 0.957 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.052 0.948 42 H 0.039 0.961 43 H 0.090 0.910 44 H 0.066 0.934 45 H 0.034 0.966 46 H 0.085 0.915 47 H 0.065 0.935 48 H 0.125 0.875 49 H 0.140 0.860 50 H 0.136 0.864 51 H 0.138 0.862 52 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.783 2.593 -22.639 25.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.035 4.035 3 H 0.142 0.858 4 C 0.289 3.711 5 O -0.459 6.459 6 N -0.344 5.344 7 C -0.065 4.065 8 C 0.141 3.859 9 C -0.578 4.578 10 H 0.070 0.930 11 C -0.192 4.192 12 N -0.570 5.570 13 Si 0.791 3.209 14 H -0.184 1.184 15 H -0.203 1.203 16 H -0.204 1.204 17 N -0.264 5.264 18 C -0.125 4.125 19 C -0.078 4.078 20 C 0.014 3.986 21 N -0.344 5.344 22 C -0.049 4.049 23 C 0.098 3.902 24 C -0.233 4.233 25 C -0.095 4.095 26 C -0.210 4.210 27 C -0.097 4.097 28 C -0.239 4.239 29 H 0.111 0.889 30 H 0.062 0.938 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.111 0.889 35 H 0.040 0.960 36 H 0.012 0.988 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.100 0.900 40 H 0.097 0.903 41 H 0.070 0.930 42 H 0.057 0.943 43 H 0.108 0.892 44 H 0.084 0.916 45 H 0.053 0.947 46 H 0.103 0.897 47 H 0.084 0.916 48 H 0.143 0.857 49 H 0.158 0.842 50 H 0.154 0.846 51 H 0.156 0.844 52 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -10.844 1.830 -22.306 24.869 hybrid contribution 0.301 -0.136 0.975 1.030 sum -10.543 1.694 -21.330 23.854 Atomic orbital electron populations 1.22337 0.93387 1.02416 1.04814 1.21633 0.95493 0.98413 0.88003 0.85775 1.21201 0.78579 0.86195 0.85149 1.90589 1.46280 1.22813 1.86211 1.48158 1.59635 1.19310 1.07320 1.21989 0.98085 0.82569 1.03824 1.18691 0.93578 0.91497 0.82142 1.21659 0.97314 1.28349 1.10499 0.92989 1.25866 1.03178 0.94656 0.95523 1.70047 1.38858 1.32138 1.15914 0.85481 0.78921 0.79107 0.77388 1.18357 1.20320 1.20415 1.61648 1.57380 1.04383 1.03021 1.22578 1.00916 0.97523 0.91533 1.22437 0.95195 0.90628 0.99511 1.21282 0.95208 0.83947 0.98142 1.46519 1.35693 1.10122 1.42067 1.21657 1.00154 0.88197 0.94936 1.18167 0.87971 0.94771 0.89290 1.20872 1.02666 0.97768 1.01977 1.21183 0.93924 0.98415 0.96008 1.21212 1.03169 0.93271 1.03380 1.21176 0.95101 0.99376 0.94090 1.20913 1.01144 0.96790 1.05007 0.88879 0.93849 0.90065 0.91173 0.91582 0.88900 0.96044 0.98767 0.92430 0.93847 0.90022 0.90320 0.92951 0.94324 0.89231 0.91565 0.94732 0.89674 0.91612 0.85750 0.84185 0.84562 0.84424 0.85730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.89 8.20 71.98 0.59 -3.30 16 2 C 0.08 2.19 1.90 44.17 0.08 2.28 16 3 H 0.12 2.95 6.36 -2.38 -0.02 2.93 16 4 C 0.50 21.19 6.80 87.66 0.60 21.79 16 5 O -0.58 -30.54 14.00 -3.04 -0.04 -30.58 16 6 N -0.61 -26.32 2.86 -851.12 -2.43 -28.76 16 7 C 0.08 2.30 9.18 127.77 1.17 3.47 16 8 C 0.26 14.47 5.16 85.63 0.44 14.91 16 9 C -0.54 -31.68 9.39 25.60 0.24 -31.44 16 10 H 0.05 3.03 7.81 -2.91 -0.02 3.00 16 11 C 0.01 0.38 5.46 84.66 0.46 0.85 16 12 N -0.93 -57.17 13.29 21.45 0.28 -56.88 16 13 Si 0.97 45.61 29.54 68.60 2.03 47.63 16 14 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 15 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 16 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 17 N -0.54 -15.09 4.44 -901.47 -4.00 -19.09 16 18 C 0.02 0.39 8.94 127.69 1.14 1.54 16 19 C 0.05 1.50 3.77 86.30 0.33 1.83 16 20 C 0.14 3.57 5.12 86.38 0.44 4.01 16 21 N -0.63 -16.15 3.01 -722.17 -2.17 -18.32 16 22 C 0.09 2.28 10.23 127.77 1.31 3.59 16 23 C 0.20 4.78 6.55 38.22 0.25 5.03 16 24 C -0.21 -4.43 9.21 22.40 0.21 -4.23 16 25 C -0.08 -1.36 10.04 22.25 0.22 -1.13 16 26 C -0.19 -3.25 10.04 22.29 0.22 -3.02 16 27 C -0.08 -1.45 10.04 22.25 0.22 -1.22 16 28 C -0.22 -4.71 9.21 22.40 0.21 -4.51 16 29 H 0.09 1.56 7.19 -2.39 -0.02 1.54 16 30 H 0.04 1.18 6.53 -2.39 -0.02 1.16 16 31 H 0.08 1.68 6.05 -2.39 -0.01 1.67 16 32 H 0.07 1.72 7.28 -2.38 -0.02 1.70 16 33 H 0.07 2.07 8.07 -2.39 -0.02 2.05 16 34 H 0.09 2.06 6.10 -2.39 -0.01 2.05 16 35 H 0.02 1.20 8.07 -2.39 -0.02 1.18 16 36 H -0.01 -0.37 7.42 -2.39 -0.02 -0.39 16 37 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 38 H 0.04 0.66 7.22 -2.39 -0.02 0.64 16 39 H 0.08 1.29 7.85 -2.39 -0.02 1.27 16 40 H 0.08 1.30 6.77 -2.39 -0.02 1.28 16 41 H 0.05 2.03 5.99 -2.38 -0.01 2.02 16 42 H 0.04 1.05 6.79 -2.39 -0.02 1.04 16 43 H 0.09 1.93 4.76 -2.38 -0.01 1.92 16 44 H 0.07 1.94 7.89 -2.39 -0.02 1.92 16 45 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.08 1.67 6.20 -2.39 -0.01 1.66 16 47 H 0.07 1.63 7.89 -2.39 -0.02 1.61 16 48 H 0.12 2.38 6.15 -2.91 -0.02 2.36 16 49 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 50 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 51 H 0.14 1.86 8.06 -2.91 -0.02 1.83 16 52 H 0.12 2.49 6.14 -2.91 -0.02 2.47 16 Total: -1.00 -77.61 402.85 2.71 -74.90 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: 0.91 Total: 20.68 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: 8.14 Total: 10.43 kcal Atomic # 7 Polarization: -114.74 SS G_CDS: -8.32 Total: -123.05 kcal Atomic # 8 Polarization: -30.54 SS G_CDS: -0.04 Total: -30.58 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.63 kcal Total: -77.61 2.71 -74.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107682912.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.883 kcal (2) G-P(sol) polarization free energy of solvation -77.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds