Wall clock time and date at job start Tue Mar 31 2020 17:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47357 * 2 1 4 4 C 1.50695 * 109.47324 * 239.99632 * 2 1 3 5 5 O 1.21281 * 120.00389 * 264.82093 * 4 2 1 6 6 N 1.34777 * 120.00117 * 84.82620 * 4 2 1 7 7 C 1.46502 * 119.99961 * 4.75337 * 6 4 2 8 8 C 1.46497 * 120.00227 * 184.75278 * 6 4 2 9 9 C 1.50707 * 109.46907 * 90.00005 * 8 6 4 10 10 H 1.07994 * 119.99874 * 359.97438 * 9 8 6 11 11 C 1.37879 * 120.00011 * 180.02562 * 9 8 6 12 12 N 1.31512 * 119.99753 * 0.02562 * 11 9 8 13 13 Si 1.86792 * 119.99868 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47491 * 60.00242 * 13 11 9 15 15 H 1.48509 * 109.47096 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47203 * 299.99601 * 13 11 9 17 17 N 1.46902 * 109.47296 * 119.99571 * 2 1 3 18 18 C 1.46901 * 111.00526 * 180.55578 * 17 2 1 19 19 C 1.46899 * 111.00017 * 304.50932 * 17 2 1 20 20 C 1.53000 * 109.47114 * 169.99621 * 19 17 2 21 21 N 1.46502 * 109.47168 * 180.02562 * 20 19 17 22 22 C 1.46507 * 119.99700 * 270.00224 * 21 20 19 23 23 C 1.39674 * 120.00320 * 89.99803 * 21 20 19 24 24 C 1.38912 * 120.07358 * 359.72267 * 23 21 20 25 25 C 1.38108 * 119.92154 * 179.76580 * 24 23 21 26 26 C 1.38275 * 120.07653 * 0.51260 * 25 24 23 27 27 C 1.38288 * 120.15160 * 359.74360 * 26 25 24 28 28 C 1.38105 * 120.07414 * 0.02562 * 27 26 25 29 29 H 1.08998 * 109.46878 * 187.79901 * 1 2 3 30 30 H 1.09001 * 109.47211 * 307.79689 * 1 2 3 31 31 H 1.09002 * 109.47030 * 67.79663 * 1 2 3 32 32 H 1.09000 * 109.47601 * 93.51410 * 7 6 4 33 33 H 1.08995 * 109.47216 * 213.51812 * 7 6 4 34 34 H 1.09003 * 109.46991 * 333.52044 * 7 6 4 35 35 H 1.08997 * 109.47254 * 209.99524 * 8 6 4 36 36 H 1.08999 * 109.47137 * 330.00038 * 8 6 4 37 37 H 0.96997 * 120.00018 * 180.02562 * 12 11 9 38 38 H 1.08999 * 109.47466 * 189.08340 * 18 17 2 39 39 H 1.09001 * 109.46656 * 309.08377 * 18 17 2 40 40 H 1.08997 * 109.46741 * 69.08042 * 18 17 2 41 41 H 1.09008 * 109.47097 * 49.99810 * 19 17 2 42 42 H 1.08997 * 109.47620 * 289.99931 * 19 17 2 43 43 H 1.09005 * 109.47299 * 299.99782 * 20 19 17 44 44 H 1.08995 * 109.47557 * 60.00207 * 20 19 17 45 45 H 1.09000 * 109.47263 * 90.00120 * 22 21 20 46 46 H 1.09007 * 109.46710 * 209.99815 * 22 21 20 47 47 H 1.08998 * 109.46848 * 329.99482 * 22 21 20 48 48 H 1.08003 * 120.03837 * 0.02562 * 24 23 21 49 49 H 1.07999 * 119.95561 * 180.25614 * 25 24 23 50 50 H 1.08004 * 119.92746 * 179.71922 * 26 25 24 51 51 H 1.08003 * 119.96565 * 179.97438 * 27 26 25 52 52 H 1.08000 * 120.04100 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.3239 -1.8864 -1.1751 6 7 2.1577 -0.0391 -2.3922 7 6 1.9058 1.4035 -2.4355 8 6 2.5460 -0.7517 -3.6119 9 6 1.3105 -1.2438 -4.3210 10 1 0.3340 -1.0458 -3.9045 11 6 1.4270 -1.9476 -5.5008 12 7 2.6164 -2.1900 -6.0072 13 14 -0.1042 -2.5581 -6.3793 14 1 -0.9651 -1.4016 -6.7351 15 1 0.2893 -3.2816 -7.6151 16 1 -0.8542 -3.4773 -5.4859 17 7 2.0197 -0.6924 1.1995 18 6 3.4881 -0.7005 1.2402 19 6 1.4626 -0.0913 2.4186 20 6 1.7886 -0.9803 3.6204 21 7 1.2326 -0.3811 4.8362 22 6 2.0358 0.5576 5.6236 23 6 -0.0633 -0.7048 5.2446 24 6 -0.8284 -1.5902 4.4961 25 6 -2.1076 -1.9117 4.9055 26 6 -2.6309 -1.3452 6.0532 27 6 -1.8739 -0.4593 6.7979 28 6 -0.5922 -0.1371 6.3969 29 1 -0.3633 -1.0182 0.1395 30 1 -0.3634 0.6298 0.8120 31 1 -0.3633 0.3884 -0.9515 32 1 2.8443 1.9406 -2.2979 33 1 1.4739 1.6681 -3.4007 34 1 1.2119 1.6752 -1.6401 35 1 3.0965 -0.0770 -4.2673 36 1 3.1777 -1.6008 -3.3511 37 1 2.6984 -2.6848 -6.8374 38 1 3.8257 -1.3530 2.0454 39 1 3.8758 -1.0664 0.2894 40 1 3.8522 0.3117 1.4158 41 1 0.3812 0.0003 2.3172 42 1 1.8984 0.8965 2.5686 43 1 1.3527 -1.9681 3.4706 44 1 2.8699 -1.0719 3.7220 45 1 1.8649 1.5724 5.2642 46 1 1.7483 0.4905 6.6729 47 1 3.0918 0.3083 5.5195 48 1 -0.4218 -2.0299 3.5973 49 1 -2.7014 -2.6032 4.3261 50 1 -3.6332 -1.5949 6.3687 51 1 -2.2857 -0.0183 7.6936 52 1 -0.0017 0.5552 6.9786 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107682915.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:53 Heat of formation + Delta-G solvation = 21.833723 kcal Electronic energy + Delta-G solvation = -29178.057999 eV Core-core repulsion = 25371.528713 eV Total energy + Delta-G solvation = -3806.529285 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.95220 -39.45866 -37.40567 -35.99640 -34.73591 -32.70432 -31.70186 -31.09185 -30.12513 -29.26502 -27.86074 -26.40509 -25.80403 -24.97260 -24.10085 -22.77461 -22.16201 -21.03444 -20.41037 -18.29158 -17.83639 -16.77470 -16.52350 -16.23459 -15.70632 -15.61321 -15.10077 -15.00667 -14.79282 -14.56132 -14.24982 -14.04716 -13.75542 -13.60159 -13.45375 -13.24505 -12.85633 -12.76782 -12.50101 -12.30692 -12.20491 -12.11865 -12.03832 -11.81450 -11.65532 -11.54303 -11.36021 -11.27483 -11.09890 -10.96402 -10.87579 -10.74250 -10.54812 -10.14981 -10.03939 -9.62974 -9.03160 -8.82607 -8.42678 -8.20798 -7.61329 -7.46157 -6.03611 -4.08553 1.33081 1.49269 2.81881 3.32336 3.36893 3.37958 3.44569 3.71697 3.80368 4.21817 4.45437 4.65273 4.67862 4.86946 4.90503 4.98223 5.00147 5.07325 5.20025 5.24972 5.28332 5.29690 5.32077 5.35615 5.41064 5.43720 5.50041 5.54174 5.61014 5.62809 5.70394 5.76668 5.81725 5.90338 5.92837 5.95969 6.13920 6.16961 6.17632 6.35743 6.38504 6.54294 6.73139 6.90380 7.00943 7.11820 7.16460 7.34840 7.45622 7.55816 7.93086 8.24075 8.43565 8.91164 9.13565 9.56660 11.04401 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.016580 B = 0.002465 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.326746 B =11356.884348 C =12359.627030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.066 3.934 3 H 0.054 0.946 4 C 0.512 3.488 5 O -0.522 6.522 6 N -0.605 5.605 7 C 0.081 3.919 8 C 0.246 3.754 9 C -0.527 4.527 10 H 0.056 0.944 11 C 0.061 3.939 12 N -0.895 5.895 13 Si 0.898 3.102 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.276 1.276 17 N -0.516 5.516 18 C 0.021 3.979 19 C 0.034 3.966 20 C 0.127 3.873 21 N -0.631 5.631 22 C 0.094 3.906 23 C 0.216 3.784 24 C -0.193 4.193 25 C -0.072 4.072 26 C -0.183 4.183 27 C -0.076 4.076 28 C -0.201 4.201 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.042 0.958 33 H 0.073 0.927 34 H 0.058 0.942 35 H 0.031 0.969 36 H 0.044 0.956 37 H 0.264 0.736 38 H 0.068 0.932 39 H 0.080 0.920 40 H 0.020 0.980 41 H 0.083 0.917 42 H 0.031 0.969 43 H 0.087 0.913 44 H 0.075 0.925 45 H 0.046 0.954 46 H 0.067 0.933 47 H 0.065 0.935 48 H 0.127 0.873 49 H 0.120 0.880 50 H 0.115 0.885 51 H 0.117 0.883 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.849 8.847 24.611 26.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.046 4.046 3 H 0.072 0.928 4 C 0.297 3.703 5 O -0.397 6.397 6 N -0.338 5.338 7 C -0.063 4.063 8 C 0.127 3.873 9 C -0.566 4.566 10 H 0.075 0.925 11 C -0.141 4.141 12 N -0.534 5.534 13 Si 0.726 3.274 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.201 1.201 17 N -0.241 5.241 18 C -0.127 4.127 19 C -0.095 4.095 20 C 0.004 3.996 21 N -0.342 5.342 22 C -0.049 4.049 23 C 0.115 3.885 24 C -0.216 4.216 25 C -0.091 4.091 26 C -0.203 4.203 27 C -0.095 4.095 28 C -0.224 4.224 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.061 0.939 33 H 0.092 0.908 34 H 0.076 0.924 35 H 0.049 0.951 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.099 0.901 40 H 0.038 0.962 41 H 0.102 0.898 42 H 0.050 0.950 43 H 0.105 0.895 44 H 0.093 0.907 45 H 0.064 0.936 46 H 0.086 0.914 47 H 0.084 0.916 48 H 0.145 0.855 49 H 0.138 0.862 50 H 0.133 0.867 51 H 0.135 0.865 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.540 7.683 24.375 25.801 hybrid contribution -0.510 0.715 -0.636 1.085 sum -4.050 8.398 23.738 25.504 Atomic orbital electron populations 1.21799 0.92333 1.03559 1.02170 1.21666 0.97179 0.95637 0.90097 0.92804 1.20016 0.79013 0.87472 0.83834 1.90666 1.48898 1.15647 1.84506 1.48166 1.67526 1.07922 1.10204 1.21682 0.99695 0.82169 1.02795 1.19265 0.96160 0.92498 0.79348 1.21395 0.92990 1.35430 1.06748 0.92533 1.24935 0.96220 0.95751 0.97186 1.69921 1.22224 1.40572 1.20669 0.86563 0.83037 0.79007 0.78843 1.20266 1.21179 1.20122 1.61636 1.08313 1.53846 1.00296 1.22488 0.86996 0.99186 1.03995 1.22652 1.01304 0.95828 0.89699 1.21425 0.98747 0.97040 0.82433 1.46440 1.12464 1.48867 1.26438 1.21627 0.95164 0.92378 0.95764 1.17862 0.84514 0.93272 0.92876 1.20852 0.95598 1.02694 1.02419 1.20941 0.94590 0.97826 0.95717 1.20903 1.00458 1.01436 0.97470 1.20854 0.93494 0.96500 0.98661 1.20658 0.97283 1.05985 0.98453 0.90772 0.92159 0.91250 0.93906 0.90806 0.92372 0.95113 0.93781 0.92666 0.91299 0.90147 0.96193 0.89828 0.95041 0.89498 0.90709 0.93584 0.91416 0.91587 0.85484 0.86187 0.86702 0.86517 0.86318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 8.27 37.15 0.31 -1.68 16 2 C 0.07 1.03 1.62 -68.87 -0.11 0.92 16 3 H 0.05 0.75 6.64 -51.93 -0.35 0.40 16 4 C 0.51 10.68 5.79 -10.99 -0.06 10.62 16 5 O -0.52 -13.18 15.04 5.56 0.08 -13.10 16 6 N -0.60 -12.89 2.86 -182.96 -0.52 -13.41 16 7 C 0.08 1.29 10.06 59.85 0.60 1.90 16 8 C 0.25 6.48 5.21 -5.19 -0.03 6.45 16 9 C -0.53 -14.96 9.39 -34.44 -0.32 -15.29 16 10 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 11 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 12 N -0.89 -26.70 13.29 55.43 0.74 -25.97 16 13 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 14 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 15 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 17 N -0.52 -7.43 4.34 -236.29 -1.02 -8.45 16 18 C 0.02 0.29 8.94 60.07 0.54 0.83 16 19 C 0.03 0.39 5.03 -3.82 -0.02 0.37 16 20 C 0.13 1.29 5.12 -4.04 -0.02 1.27 16 21 N -0.63 -6.01 3.01 -179.61 -0.54 -6.55 16 22 C 0.09 0.66 10.23 59.85 0.61 1.27 16 23 C 0.22 2.28 6.55 -83.79 -0.55 1.73 16 24 C -0.19 -2.13 9.20 -39.38 -0.36 -2.49 16 25 C -0.07 -0.73 10.04 -39.62 -0.40 -1.13 16 26 C -0.18 -1.71 10.04 -39.55 -0.40 -2.11 16 27 C -0.08 -0.69 10.04 -39.61 -0.40 -1.09 16 28 C -0.20 -1.91 9.21 -39.38 -0.36 -2.28 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.06 0.69 6.59 -51.93 -0.34 0.35 16 31 H 0.07 1.00 7.46 -51.93 -0.39 0.61 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 1.21 8.10 -51.93 -0.42 0.79 16 34 H 0.06 0.77 5.32 -51.93 -0.28 0.49 16 35 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 36 H 0.04 1.31 7.36 -51.93 -0.38 0.93 16 37 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 38 H 0.07 0.82 6.72 -51.93 -0.35 0.47 16 39 H 0.08 1.36 6.16 -51.93 -0.32 1.04 16 40 H 0.02 0.24 8.08 -51.93 -0.42 -0.18 16 41 H 0.08 0.99 5.86 -51.92 -0.30 0.68 16 42 H 0.03 0.34 8.07 -51.93 -0.42 -0.07 16 43 H 0.09 0.97 6.21 -51.93 -0.32 0.65 16 44 H 0.07 0.70 6.42 -51.93 -0.33 0.37 16 45 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.07 0.41 6.20 -51.93 -0.32 0.09 16 47 H 0.07 0.40 7.89 -51.93 -0.41 -0.01 16 48 H 0.13 1.43 6.15 -52.48 -0.32 1.11 16 49 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 50 H 0.11 0.87 8.06 -52.48 -0.42 0.45 16 51 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 52 H 0.12 0.92 6.14 -52.49 -0.32 0.60 16 LS Contribution 407.77 15.07 6.14 6.14 Total: -1.00 -33.51 407.77 -9.71 -43.22 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -8.50 Total: 0.25 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -1.07 Total: 0.95 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: -1.35 Total: -54.38 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.08 Total: -13.10 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.51 -9.71 -43.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107682915.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.057 kcal (2) G-P(sol) polarization free energy of solvation -33.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds