Wall clock time and date at job start Tue Mar 31 2020 17:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47357 * 2 1 4 4 C 1.50695 * 109.47324 * 239.99632 * 2 1 3 5 5 O 1.21281 * 120.00389 * 264.82093 * 4 2 1 6 6 N 1.34777 * 120.00117 * 84.82620 * 4 2 1 7 7 C 1.46502 * 119.99961 * 4.75337 * 6 4 2 8 8 C 1.46497 * 120.00227 * 184.75278 * 6 4 2 9 9 C 1.50707 * 109.46907 * 90.00005 * 8 6 4 10 10 H 1.07994 * 119.99874 * 359.97438 * 9 8 6 11 11 C 1.37879 * 120.00011 * 180.02562 * 9 8 6 12 12 N 1.31512 * 119.99753 * 0.02562 * 11 9 8 13 13 Si 1.86792 * 119.99868 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47491 * 60.00242 * 13 11 9 15 15 H 1.48509 * 109.47096 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47203 * 299.99601 * 13 11 9 17 17 N 1.46902 * 109.47296 * 119.99571 * 2 1 3 18 18 C 1.46901 * 111.00526 * 180.55578 * 17 2 1 19 19 C 1.46899 * 111.00017 * 304.50932 * 17 2 1 20 20 C 1.53000 * 109.47114 * 169.99621 * 19 17 2 21 21 N 1.46502 * 109.47168 * 180.02562 * 20 19 17 22 22 C 1.46507 * 119.99700 * 270.00224 * 21 20 19 23 23 C 1.39674 * 120.00320 * 89.99803 * 21 20 19 24 24 C 1.38912 * 120.07358 * 359.72267 * 23 21 20 25 25 C 1.38108 * 119.92154 * 179.76580 * 24 23 21 26 26 C 1.38275 * 120.07653 * 0.51260 * 25 24 23 27 27 C 1.38288 * 120.15160 * 359.74360 * 26 25 24 28 28 C 1.38105 * 120.07414 * 0.02562 * 27 26 25 29 29 H 1.08998 * 109.46878 * 187.79901 * 1 2 3 30 30 H 1.09001 * 109.47211 * 307.79689 * 1 2 3 31 31 H 1.09002 * 109.47030 * 67.79663 * 1 2 3 32 32 H 1.09000 * 109.47601 * 93.51410 * 7 6 4 33 33 H 1.08995 * 109.47216 * 213.51812 * 7 6 4 34 34 H 1.09003 * 109.46991 * 333.52044 * 7 6 4 35 35 H 1.08997 * 109.47254 * 209.99524 * 8 6 4 36 36 H 1.08999 * 109.47137 * 330.00038 * 8 6 4 37 37 H 0.96997 * 120.00018 * 180.02562 * 12 11 9 38 38 H 1.08999 * 109.47466 * 189.08340 * 18 17 2 39 39 H 1.09001 * 109.46656 * 309.08377 * 18 17 2 40 40 H 1.08997 * 109.46741 * 69.08042 * 18 17 2 41 41 H 1.09008 * 109.47097 * 49.99810 * 19 17 2 42 42 H 1.08997 * 109.47620 * 289.99931 * 19 17 2 43 43 H 1.09005 * 109.47299 * 299.99782 * 20 19 17 44 44 H 1.08995 * 109.47557 * 60.00207 * 20 19 17 45 45 H 1.09000 * 109.47263 * 90.00120 * 22 21 20 46 46 H 1.09007 * 109.46710 * 209.99815 * 22 21 20 47 47 H 1.08998 * 109.46848 * 329.99482 * 22 21 20 48 48 H 1.08003 * 120.03837 * 0.02562 * 24 23 21 49 49 H 1.07999 * 119.95561 * 180.25614 * 25 24 23 50 50 H 1.08004 * 119.92746 * 179.71922 * 26 25 24 51 51 H 1.08003 * 119.96565 * 179.97438 * 27 26 25 52 52 H 1.08000 * 120.04100 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.3239 -1.8864 -1.1751 6 7 2.1577 -0.0391 -2.3922 7 6 1.9058 1.4035 -2.4355 8 6 2.5460 -0.7517 -3.6119 9 6 1.3105 -1.2438 -4.3210 10 1 0.3340 -1.0458 -3.9045 11 6 1.4270 -1.9476 -5.5008 12 7 2.6164 -2.1900 -6.0072 13 14 -0.1042 -2.5581 -6.3793 14 1 -0.9651 -1.4016 -6.7351 15 1 0.2893 -3.2816 -7.6151 16 1 -0.8542 -3.4773 -5.4859 17 7 2.0197 -0.6924 1.1995 18 6 3.4881 -0.7005 1.2402 19 6 1.4626 -0.0913 2.4186 20 6 1.7886 -0.9803 3.6204 21 7 1.2326 -0.3811 4.8362 22 6 2.0358 0.5576 5.6236 23 6 -0.0633 -0.7048 5.2446 24 6 -0.8284 -1.5902 4.4961 25 6 -2.1076 -1.9117 4.9055 26 6 -2.6309 -1.3452 6.0532 27 6 -1.8739 -0.4593 6.7979 28 6 -0.5922 -0.1371 6.3969 29 1 -0.3633 -1.0182 0.1395 30 1 -0.3634 0.6298 0.8120 31 1 -0.3633 0.3884 -0.9515 32 1 2.8443 1.9406 -2.2979 33 1 1.4739 1.6681 -3.4007 34 1 1.2119 1.6752 -1.6401 35 1 3.0965 -0.0770 -4.2673 36 1 3.1777 -1.6008 -3.3511 37 1 2.6984 -2.6848 -6.8374 38 1 3.8257 -1.3530 2.0454 39 1 3.8758 -1.0664 0.2894 40 1 3.8522 0.3117 1.4158 41 1 0.3812 0.0003 2.3172 42 1 1.8984 0.8965 2.5686 43 1 1.3527 -1.9681 3.4706 44 1 2.8699 -1.0719 3.7220 45 1 1.8649 1.5724 5.2642 46 1 1.7483 0.4905 6.6729 47 1 3.0918 0.3083 5.5195 48 1 -0.4218 -2.0299 3.5973 49 1 -2.7014 -2.6032 4.3261 50 1 -3.6332 -1.5949 6.3687 51 1 -2.2857 -0.0183 7.6936 52 1 -0.0017 0.5552 6.9786 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107682915.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:52 Heat of formation + Delta-G solvation = 1.123911 kcal Electronic energy + Delta-G solvation = -29178.956044 eV Core-core repulsion = 25371.528713 eV Total energy + Delta-G solvation = -3807.427330 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.18151 -40.45314 -38.54568 -36.89949 -36.49179 -34.76614 -32.83282 -31.93164 -30.93758 -30.05211 -29.75111 -27.47097 -27.13288 -26.00085 -25.59840 -24.10941 -23.01569 -22.14578 -21.24610 -19.80865 -18.68224 -18.57829 -18.16270 -17.45446 -16.92148 -16.49860 -16.40145 -16.24812 -15.98496 -15.72004 -15.32599 -15.19719 -14.74305 -14.70745 -14.41771 -14.31763 -14.03097 -13.91462 -13.71037 -13.50883 -13.45978 -13.38534 -13.19370 -13.06062 -12.81838 -12.80554 -12.72279 -12.57693 -12.48504 -12.38314 -12.20534 -12.19014 -11.79202 -11.71735 -11.53457 -10.76811 -10.64693 -10.45100 -9.75721 -9.43463 -9.27985 -8.22747 -8.17313 -6.37818 0.60539 0.76817 1.36126 1.40754 1.47784 1.80784 2.02657 2.32222 2.43416 3.00203 3.06686 3.08027 3.61535 3.86773 3.96267 4.02509 4.07558 4.13504 4.19543 4.34863 4.36460 4.39670 4.42899 4.48179 4.51921 4.62612 4.65794 4.67334 4.68935 4.73020 4.76967 4.82877 4.90058 4.93459 4.94051 4.96988 5.00941 5.08825 5.19593 5.22436 5.24113 5.44315 5.54998 5.68597 5.80047 5.82554 5.90822 5.99984 6.05663 6.09631 6.40230 6.62970 6.69937 6.79139 7.28231 7.50689 8.84176 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.016580 B = 0.002465 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.326746 B =11356.884348 C =12359.627030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.079 3.921 3 H 0.083 0.917 4 C 0.504 3.496 5 O -0.578 6.578 6 N -0.613 5.613 7 C 0.076 3.924 8 C 0.261 3.739 9 C -0.543 4.543 10 H 0.054 0.946 11 C 0.007 3.993 12 N -0.929 5.929 13 Si 0.967 3.033 14 H -0.259 1.259 15 H -0.278 1.278 16 H -0.278 1.278 17 N -0.536 5.536 18 C 0.027 3.973 19 C 0.045 3.955 20 C 0.133 3.867 21 N -0.633 5.633 22 C 0.090 3.910 23 C 0.204 3.796 24 C -0.214 4.214 25 C -0.085 4.085 26 C -0.191 4.191 27 C -0.079 4.079 28 C -0.206 4.206 29 H 0.052 0.948 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.092 0.908 35 H 0.022 0.978 36 H -0.003 1.003 37 H 0.267 0.733 38 H 0.084 0.916 39 H 0.039 0.961 40 H 0.043 0.957 41 H 0.079 0.921 42 H 0.046 0.954 43 H 0.070 0.930 44 H 0.084 0.916 45 H 0.052 0.948 46 H 0.077 0.923 47 H 0.076 0.924 48 H 0.115 0.885 49 H 0.126 0.874 50 H 0.131 0.869 51 H 0.141 0.859 52 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.348 11.086 26.629 29.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.032 4.032 3 H 0.100 0.900 4 C 0.292 3.708 5 O -0.457 6.457 6 N -0.345 5.345 7 C -0.066 4.066 8 C 0.140 3.860 9 C -0.581 4.581 10 H 0.072 0.928 11 C -0.192 4.192 12 N -0.568 5.568 13 Si 0.791 3.209 14 H -0.183 1.183 15 H -0.204 1.204 16 H -0.203 1.203 17 N -0.262 5.262 18 C -0.121 4.121 19 C -0.083 4.083 20 C 0.009 3.991 21 N -0.343 5.343 22 C -0.053 4.053 23 C 0.102 3.898 24 C -0.236 4.236 25 C -0.104 4.104 26 C -0.211 4.211 27 C -0.098 4.098 28 C -0.228 4.228 29 H 0.071 0.929 30 H 0.112 0.888 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.111 0.889 35 H 0.040 0.960 36 H 0.015 0.985 37 H 0.076 0.924 38 H 0.102 0.898 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.098 0.902 42 H 0.064 0.936 43 H 0.088 0.912 44 H 0.102 0.898 45 H 0.070 0.930 46 H 0.096 0.904 47 H 0.095 0.905 48 H 0.133 0.867 49 H 0.144 0.856 50 H 0.149 0.851 51 H 0.159 0.841 52 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.045 9.984 26.419 28.690 hybrid contribution -0.003 0.017 -1.198 1.198 sum -5.048 10.001 25.222 27.598 Atomic orbital electron populations 1.21787 0.91081 1.03042 1.03389 1.21557 0.97843 0.95985 0.87862 0.89996 1.21038 0.77637 0.87087 0.85049 1.90629 1.51158 1.18395 1.85544 1.48186 1.67326 1.10072 1.08911 1.21966 1.01878 0.78858 1.03933 1.18717 0.94884 0.91258 0.81157 1.21670 0.93351 1.35869 1.07228 0.92774 1.25872 0.99550 0.95742 0.98029 1.70047 1.24459 1.41165 1.21166 0.85476 0.79044 0.78827 0.77528 1.18326 1.20354 1.20326 1.61566 1.08790 1.54882 1.00954 1.22404 0.86705 1.00660 1.02353 1.22601 1.00833 0.96421 0.88460 1.21283 0.99119 0.96140 0.82590 1.46503 1.12377 1.49211 1.26258 1.21793 0.95424 0.92031 0.96003 1.18034 0.84969 0.93440 0.93342 1.20887 0.96338 1.03724 1.02638 1.21136 0.94578 0.98262 0.96396 1.21173 1.01360 1.01378 0.97164 1.21201 0.93317 0.95998 0.99243 1.20921 0.97713 1.06053 0.98154 0.92890 0.88790 0.91416 0.91481 0.91320 0.88925 0.95984 0.98529 0.92400 0.89752 0.94158 0.93898 0.90225 0.93581 0.91187 0.89759 0.92955 0.90407 0.90529 0.86690 0.85590 0.85068 0.84118 0.84537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.60 8.27 71.98 0.60 -3.01 16 2 C 0.08 2.36 1.62 44.17 0.07 2.43 16 3 H 0.08 2.00 6.64 -2.39 -0.02 1.98 16 4 C 0.50 21.50 5.79 87.66 0.51 22.01 16 5 O -0.58 -30.85 15.04 -3.03 -0.05 -30.90 16 6 N -0.61 -26.52 2.86 -851.13 -2.43 -28.95 16 7 C 0.08 2.30 10.06 127.77 1.29 3.59 16 8 C 0.26 14.38 5.21 85.64 0.45 14.83 16 9 C -0.54 -31.65 9.39 25.60 0.24 -31.41 16 10 H 0.05 3.11 7.81 -2.91 -0.02 3.08 16 11 C 0.01 0.41 5.46 84.66 0.46 0.87 16 12 N -0.93 -56.90 13.29 21.45 0.28 -56.62 16 13 Si 0.97 45.33 29.54 68.60 2.03 47.36 16 14 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 15 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 16 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 17 N -0.54 -14.96 4.34 -901.48 -3.91 -18.87 16 18 C 0.03 0.71 8.94 127.69 1.14 1.85 16 19 C 0.05 0.94 5.03 86.30 0.43 1.37 16 20 C 0.13 2.53 5.12 86.38 0.44 2.97 16 21 N -0.63 -10.84 3.01 -722.16 -2.17 -13.01 16 22 C 0.09 1.01 10.23 127.77 1.31 2.32 16 23 C 0.20 4.02 6.55 38.22 0.25 4.27 16 24 C -0.21 -4.66 9.20 22.40 0.21 -4.45 16 25 C -0.09 -1.69 10.04 22.25 0.22 -1.46 16 26 C -0.19 -3.29 10.04 22.29 0.22 -3.06 16 27 C -0.08 -1.24 10.04 22.25 0.22 -1.02 16 28 C -0.21 -3.45 9.21 22.40 0.21 -3.25 16 29 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.09 1.88 6.59 -2.39 -0.02 1.86 16 31 H 0.07 1.82 7.46 -2.39 -0.02 1.80 16 32 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.07 2.17 8.10 -2.39 -0.02 2.15 16 34 H 0.09 2.16 5.32 -2.39 -0.01 2.15 16 35 H 0.02 1.23 8.07 -2.39 -0.02 1.21 16 36 H 0.00 -0.22 7.36 -2.39 -0.02 -0.24 16 37 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 38 H 0.08 1.93 6.72 -2.39 -0.02 1.92 16 39 H 0.04 1.41 6.16 -2.39 -0.01 1.39 16 40 H 0.04 0.93 8.08 -2.39 -0.02 0.91 16 41 H 0.08 1.72 5.86 -2.38 -0.01 1.70 16 42 H 0.05 0.84 8.07 -2.39 -0.02 0.82 16 43 H 0.07 1.58 6.21 -2.38 -0.01 1.57 16 44 H 0.08 1.43 6.42 -2.39 -0.02 1.41 16 45 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 46 H 0.08 0.72 6.20 -2.38 -0.01 0.70 16 47 H 0.08 0.70 7.89 -2.39 -0.02 0.68 16 48 H 0.12 2.69 6.15 -2.91 -0.02 2.68 16 49 H 0.13 2.19 8.06 -2.91 -0.02 2.16 16 50 H 0.13 1.74 8.06 -2.91 -0.02 1.71 16 51 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 52 H 0.14 1.71 6.14 -2.91 -0.02 1.69 16 Total: -1.00 -76.69 407.77 2.92 -73.77 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: 0.90 Total: 18.38 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: 8.27 Total: 8.85 kcal Atomic # 7 Polarization: -109.23 SS G_CDS: -8.23 Total: -117.46 kcal Atomic # 8 Polarization: -30.85 SS G_CDS: -0.05 Total: -30.90 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -76.69 2.92 -73.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107682915.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.893 kcal (2) G-P(sol) polarization free energy of solvation -76.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds