Wall clock time and date at job start Tue Mar 31 2020 18:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.47263 * 2 1 4 4 C 1.34776 * 120.00274 * 179.97438 * 3 2 1 5 5 O 1.21281 * 119.99939 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99791 * 180.02562 * 4 3 2 7 7 N 1.46907 * 109.46767 * 174.54308 * 6 4 3 8 8 C 1.46895 * 110.99980 * 160.43620 * 7 6 4 9 9 C 1.53005 * 109.46989 * 289.71321 * 8 7 6 10 10 C 1.46900 * 111.00026 * 284.38853 * 7 6 4 11 11 C 1.50699 * 109.47136 * 170.00001 * 10 7 6 12 12 C 1.38278 * 119.92532 * 90.00009 * 11 10 7 13 13 C 1.38106 * 120.07483 * 180.02562 * 12 11 10 14 14 C 1.38913 * 119.92793 * 359.97438 * 13 12 11 15 15 N 1.39671 * 120.07571 * 179.97438 * 14 13 12 16 16 C 1.46500 * 120.00050 * 0.02562 * 15 14 13 17 17 C 1.46505 * 119.99866 * 179.97438 * 15 14 13 18 18 C 1.50707 * 109.46796 * 90.00198 * 17 15 14 19 19 H 1.08003 * 120.00050 * 359.97438 * 18 17 15 20 20 C 1.37871 * 119.99985 * 180.02562 * 18 17 15 21 21 N 1.31512 * 119.99811 * 0.02562 * 20 18 17 22 22 Si 1.86791 * 120.00140 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47137 * 89.99936 * 22 20 18 24 24 H 1.48505 * 109.47305 * 209.99603 * 22 20 18 25 25 H 1.48498 * 109.47359 * 329.99959 * 22 20 18 26 26 C 1.38911 * 119.84416 * 0.25513 * 14 13 12 27 27 C 1.38100 * 119.92732 * 359.49092 * 26 14 13 28 28 H 1.08997 * 109.47208 * 299.99467 * 1 2 3 29 29 H 1.09001 * 109.47003 * 59.99735 * 1 2 3 30 30 H 1.08999 * 109.47034 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47193 * 240.00132 * 2 1 3 32 32 H 1.09001 * 109.47003 * 120.00265 * 2 1 3 33 33 H 0.97003 * 119.99810 * 0.02562 * 3 2 1 34 34 H 1.08997 * 109.47044 * 54.54795 * 6 4 3 35 35 H 1.09000 * 109.47127 * 294.53845 * 6 4 3 36 36 H 1.09000 * 109.46816 * 49.71095 * 8 7 6 37 37 H 1.09000 * 109.47187 * 169.71600 * 8 7 6 38 38 H 1.09000 * 109.47047 * 65.83540 * 9 8 7 39 39 H 1.08998 * 109.46774 * 185.83763 * 9 8 7 40 40 H 1.08999 * 109.47145 * 305.83560 * 9 8 7 41 41 H 1.09009 * 109.46958 * 50.00041 * 10 7 6 42 42 H 1.08997 * 109.47322 * 290.00438 * 10 7 6 43 43 H 1.08006 * 119.96391 * 0.04977 * 12 11 10 44 44 H 1.08005 * 120.03500 * 179.97438 * 13 12 11 45 45 H 1.08999 * 109.46792 * 269.99859 * 16 15 14 46 46 H 1.08997 * 109.47042 * 30.00134 * 16 15 14 47 47 H 1.08997 * 109.46728 * 150.00075 * 16 15 14 48 48 H 1.08994 * 109.47253 * 210.00345 * 17 15 14 49 49 H 1.08997 * 109.46698 * 330.00602 * 17 15 14 50 50 H 0.97007 * 120.00163 * 180.02562 * 21 20 18 51 51 H 1.08006 * 120.03431 * 179.72533 * 26 14 13 52 52 H 1.08010 * 119.96253 * 180.24794 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1316 0.7057 0.0005 6 6 3.8457 3.0483 0.0011 7 7 5.3088 3.0504 0.1333 8 6 5.8763 4.3283 -0.3170 9 6 5.7408 4.4390 -1.8370 10 6 5.7131 2.7522 1.5138 11 6 7.2013 2.5206 1.5624 12 6 8.0579 3.5829 1.7858 13 6 9.4223 3.3742 1.8305 14 6 9.9341 2.0953 1.6513 15 7 11.3135 1.8808 1.6953 16 6 12.2225 3.0053 1.9313 17 6 11.8514 0.5312 1.5067 18 6 12.1159 0.2961 0.0418 19 1 11.9042 1.0741 -0.6768 20 6 12.6273 -0.9124 -0.3811 21 7 12.8837 -1.8602 0.4938 22 14 12.9545 -1.2040 -2.1969 23 1 14.3414 -0.7853 -2.5234 24 1 12.7879 -2.6473 -2.5043 25 1 11.9946 -0.4114 -3.0065 26 6 9.0710 1.0312 1.4224 27 6 7.7074 1.2460 1.3842 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.3880 2.1185 0.0004 34 1 3.4045 3.5893 0.8382 35 1 3.5647 3.5334 -0.9337 36 1 5.3401 5.1508 0.1564 37 1 6.9299 4.3751 -0.0418 38 1 4.6857 4.4965 -2.1046 39 1 6.2529 5.3369 -2.1829 40 1 6.1874 3.5624 -2.3064 41 1 5.1946 1.8576 1.8590 42 1 5.4549 3.5930 2.1576 43 1 7.6594 4.5770 1.9258 44 1 10.0908 4.2045 2.0045 45 1 12.5060 3.4496 0.9772 46 1 11.7227 3.7535 2.5464 47 1 13.1150 2.6491 2.4457 48 1 12.7820 0.4297 2.0649 49 1 11.1294 -0.2013 1.8677 50 1 13.2438 -2.7104 0.1963 51 1 9.4658 0.0363 1.2783 52 1 7.0355 0.4184 1.2102 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119328104.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:21 Heat of formation + Delta-G solvation = 2.631246 kcal Electronic energy + Delta-G solvation = -28808.447156 eV Core-core repulsion = 25001.085189 eV Total energy + Delta-G solvation = -3807.361967 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.96947 -38.96845 -37.36494 -35.45168 -35.21287 -32.67132 -31.35690 -31.16805 -30.35758 -29.73717 -27.73446 -27.22976 -25.28846 -24.05601 -23.16008 -22.22770 -21.68431 -21.02030 -20.28101 -19.48480 -17.31551 -16.65617 -16.43508 -16.32909 -15.97558 -15.30418 -15.19587 -15.04177 -14.45584 -14.16983 -14.13671 -14.08913 -13.59098 -13.45638 -13.34488 -13.01247 -12.79878 -12.77480 -12.47069 -12.20412 -12.15493 -12.06200 -11.84712 -11.72121 -11.62358 -11.39425 -11.20699 -11.17674 -10.92659 -10.83907 -10.61152 -10.55444 -10.16584 -9.84582 -9.78260 -9.65556 -9.22756 -8.74221 -8.43695 -8.23144 -8.12644 -6.38233 -5.94422 -4.09974 2.21315 2.30991 2.63958 2.94022 3.31861 3.38594 3.44383 4.00959 4.23169 4.48286 4.56679 4.72474 4.75572 4.80210 4.92461 4.99993 5.05473 5.12841 5.20501 5.28422 5.39147 5.46220 5.49677 5.54433 5.59689 5.65180 5.70082 5.71799 5.78844 5.84188 5.93953 6.08833 6.10625 6.21609 6.25814 6.27252 6.34781 6.49183 6.55119 6.75447 6.92995 7.05993 7.10399 7.14092 7.31944 7.36124 7.39244 7.50570 7.71788 7.88255 8.22322 8.22957 8.34780 8.56997 8.98891 9.56596 11.02552 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011076 B = 0.002786 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2527.271182 B =10046.758544 C =11185.708490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.115 3.885 3 N -0.741 5.741 4 C 0.507 3.493 5 O -0.506 6.506 6 C 0.034 3.966 7 N -0.514 5.514 8 C 0.047 3.953 9 C -0.148 4.148 10 C 0.114 3.886 11 C -0.164 4.164 12 C -0.071 4.071 13 C -0.224 4.224 14 C 0.241 3.759 15 N -0.617 5.617 16 C 0.101 3.899 17 C 0.249 3.751 18 C -0.528 4.528 19 H 0.059 0.941 20 C 0.061 3.939 21 N -0.896 5.896 22 Si 0.896 3.104 23 H -0.281 1.281 24 H -0.285 1.285 25 H -0.273 1.273 26 C -0.188 4.188 27 C -0.044 4.044 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.396 0.604 34 H 0.059 0.941 35 H 0.102 0.898 36 H 0.028 0.972 37 H 0.092 0.908 38 H 0.046 0.954 39 H 0.057 0.943 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.029 0.971 43 H 0.104 0.896 44 H 0.112 0.888 45 H 0.040 0.960 46 H 0.052 0.948 47 H 0.060 0.940 48 H 0.029 0.971 49 H 0.036 0.964 50 H 0.263 0.737 51 H 0.131 0.869 52 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.096 12.470 1.381 26.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.009 4.009 3 N -0.397 5.397 4 C 0.292 3.708 5 O -0.379 6.379 6 C -0.097 4.097 7 N -0.238 5.238 8 C -0.081 4.081 9 C -0.206 4.206 10 C -0.012 4.012 11 C -0.167 4.167 12 C -0.090 4.090 13 C -0.247 4.247 14 C 0.134 3.866 15 N -0.323 5.323 16 C -0.043 4.043 17 C 0.130 3.870 18 C -0.567 4.567 19 H 0.077 0.923 20 C -0.141 4.141 21 N -0.535 5.535 22 Si 0.723 3.277 23 H -0.207 1.207 24 H -0.211 1.211 25 H -0.197 1.197 26 C -0.210 4.210 27 C -0.063 4.063 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.230 0.770 34 H 0.077 0.923 35 H 0.120 0.880 36 H 0.046 0.954 37 H 0.110 0.890 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.047 0.953 43 H 0.122 0.878 44 H 0.129 0.871 45 H 0.058 0.942 46 H 0.071 0.929 47 H 0.079 0.921 48 H 0.047 0.953 49 H 0.054 0.946 50 H 0.073 0.927 51 H 0.148 0.852 52 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -21.982 11.161 1.108 24.678 hybrid contribution -0.376 0.721 -0.643 1.037 sum -22.357 11.882 0.465 25.323 Atomic orbital electron populations 1.21998 0.94650 1.03183 1.02319 1.21251 0.93931 0.83198 1.02508 1.46090 1.07267 1.08665 1.77650 1.20719 0.81821 0.91896 0.76358 1.90764 1.54858 1.45860 1.46376 1.21987 0.90948 0.93804 1.03007 1.61691 1.05819 1.32502 1.23793 1.22212 1.01603 0.88406 0.95842 1.21803 1.00890 1.02317 0.95540 1.20858 0.93783 0.99702 0.86858 1.19062 0.93296 0.93878 1.10431 1.20485 0.92713 0.96976 0.98870 1.20479 0.95165 0.95507 1.13514 1.17940 0.84265 0.93079 0.91276 1.47071 1.01603 1.09456 1.74146 1.21438 0.93554 0.89625 0.99666 1.19290 0.94254 0.77070 0.96425 1.21575 1.42526 0.99589 0.93037 0.92296 1.24955 0.95426 0.95823 0.97908 1.69931 1.44523 1.05283 1.33805 0.86527 0.78527 0.77431 0.85197 1.20707 1.21091 1.19728 1.20906 0.92582 0.99335 1.08223 1.20708 0.94297 0.96091 0.95236 0.92087 0.92083 0.90858 0.91548 0.91570 0.77012 0.92329 0.87983 0.95379 0.88995 0.93518 0.92372 0.91369 0.90451 0.95287 0.87831 0.87056 0.94199 0.92902 0.92150 0.95293 0.94631 0.92706 0.85158 0.86705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.78 10.03 37.16 0.37 -0.40 16 2 C 0.11 0.92 6.39 -4.04 -0.03 0.89 16 3 N -0.74 -6.00 5.56 -60.29 -0.33 -6.34 16 4 C 0.51 5.98 7.38 -10.98 -0.08 5.90 16 5 O -0.51 -8.54 15.49 5.56 0.09 -8.46 16 6 C 0.03 0.33 5.32 -4.97 -0.03 0.31 16 7 N -0.51 -6.75 4.00 -237.51 -0.95 -7.70 16 8 C 0.05 0.54 5.50 -3.82 -0.02 0.52 16 9 C -0.15 -1.57 9.85 37.16 0.37 -1.21 16 10 C 0.11 1.61 4.76 -4.98 -0.02 1.58 16 11 C -0.16 -2.76 4.93 -104.59 -0.52 -3.27 16 12 C -0.07 -1.14 7.83 -39.62 -0.31 -1.45 16 13 C -0.22 -4.02 9.21 -39.38 -0.36 -4.39 16 14 C 0.24 5.12 6.55 -83.79 -0.55 4.57 16 15 N -0.62 -13.71 2.99 -181.00 -0.54 -14.25 16 16 C 0.10 1.84 10.23 59.85 0.61 2.45 16 17 C 0.25 6.48 4.95 -5.19 -0.03 6.45 16 18 C -0.53 -14.95 9.39 -34.44 -0.32 -15.27 16 19 H 0.06 1.71 7.81 -52.48 -0.41 1.30 16 20 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 21 N -0.90 -26.45 13.29 55.43 0.74 -25.71 16 22 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 26 C -0.19 -4.10 9.20 -39.38 -0.36 -4.46 16 27 C -0.04 -0.85 9.69 -39.61 -0.38 -1.24 16 28 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.40 1.90 8.47 -40.82 -0.35 1.56 16 34 H 0.06 0.45 8.00 -51.93 -0.42 0.03 16 35 H 0.10 0.82 6.23 -51.93 -0.32 0.49 16 36 H 0.03 0.27 8.07 -51.93 -0.42 -0.15 16 37 H 0.09 1.24 5.22 -51.93 -0.27 0.97 16 38 H 0.05 0.41 6.65 -51.93 -0.35 0.07 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.08 1.16 6.81 -51.92 -0.35 0.81 16 42 H 0.03 0.36 8.06 -51.93 -0.42 -0.06 16 43 H 0.10 1.38 7.77 -52.48 -0.41 0.97 16 44 H 0.11 1.80 6.14 -52.48 -0.32 1.47 16 45 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.05 0.81 6.20 -51.93 -0.32 0.49 16 47 H 0.06 1.05 7.89 -51.93 -0.41 0.64 16 48 H 0.03 0.78 7.89 -51.93 -0.41 0.37 16 49 H 0.04 0.98 6.21 -51.93 -0.32 0.66 16 50 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 51 H 0.13 3.14 6.15 -52.48 -0.32 2.81 16 52 H 0.11 2.23 8.06 -52.48 -0.42 1.80 16 LS Contribution 413.95 15.07 6.24 6.24 Total: -1.00 -33.45 413.95 -10.30 -43.75 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -8.76 Total: 2.77 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: -1.76 Total: -7.38 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: -1.09 Total: -54.00 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: 0.09 Total: -8.46 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -33.45 -10.30 -43.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119328104.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.383 kcal (2) G-P(sol) polarization free energy of solvation -33.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds