Wall clock time and date at job start Tue Mar 31 2020 18:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.47263 * 2 1 4 4 C 1.34776 * 120.00274 * 179.97438 * 3 2 1 5 5 O 1.21281 * 119.99939 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99791 * 180.02562 * 4 3 2 7 7 N 1.46907 * 109.46767 * 174.54308 * 6 4 3 8 8 C 1.46895 * 110.99980 * 160.43620 * 7 6 4 9 9 C 1.53005 * 109.46989 * 289.71321 * 8 7 6 10 10 C 1.46900 * 111.00026 * 284.38853 * 7 6 4 11 11 C 1.50699 * 109.47136 * 170.00001 * 10 7 6 12 12 C 1.38278 * 119.92532 * 90.00009 * 11 10 7 13 13 C 1.38106 * 120.07483 * 180.02562 * 12 11 10 14 14 C 1.38913 * 119.92793 * 359.97438 * 13 12 11 15 15 N 1.39671 * 120.07571 * 179.97438 * 14 13 12 16 16 C 1.46500 * 120.00050 * 0.02562 * 15 14 13 17 17 C 1.46505 * 119.99866 * 179.97438 * 15 14 13 18 18 C 1.50707 * 109.46796 * 90.00198 * 17 15 14 19 19 H 1.08003 * 120.00050 * 359.97438 * 18 17 15 20 20 C 1.37871 * 119.99985 * 180.02562 * 18 17 15 21 21 N 1.31512 * 119.99811 * 0.02562 * 20 18 17 22 22 Si 1.86791 * 120.00140 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47137 * 89.99936 * 22 20 18 24 24 H 1.48505 * 109.47305 * 209.99603 * 22 20 18 25 25 H 1.48498 * 109.47359 * 329.99959 * 22 20 18 26 26 C 1.38911 * 119.84416 * 0.25513 * 14 13 12 27 27 C 1.38100 * 119.92732 * 359.49092 * 26 14 13 28 28 H 1.08997 * 109.47208 * 299.99467 * 1 2 3 29 29 H 1.09001 * 109.47003 * 59.99735 * 1 2 3 30 30 H 1.08999 * 109.47034 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47193 * 240.00132 * 2 1 3 32 32 H 1.09001 * 109.47003 * 120.00265 * 2 1 3 33 33 H 0.97003 * 119.99810 * 0.02562 * 3 2 1 34 34 H 1.08997 * 109.47044 * 54.54795 * 6 4 3 35 35 H 1.09000 * 109.47127 * 294.53845 * 6 4 3 36 36 H 1.09000 * 109.46816 * 49.71095 * 8 7 6 37 37 H 1.09000 * 109.47187 * 169.71600 * 8 7 6 38 38 H 1.09000 * 109.47047 * 65.83540 * 9 8 7 39 39 H 1.08998 * 109.46774 * 185.83763 * 9 8 7 40 40 H 1.08999 * 109.47145 * 305.83560 * 9 8 7 41 41 H 1.09009 * 109.46958 * 50.00041 * 10 7 6 42 42 H 1.08997 * 109.47322 * 290.00438 * 10 7 6 43 43 H 1.08006 * 119.96391 * 0.04977 * 12 11 10 44 44 H 1.08005 * 120.03500 * 179.97438 * 13 12 11 45 45 H 1.08999 * 109.46792 * 269.99859 * 16 15 14 46 46 H 1.08997 * 109.47042 * 30.00134 * 16 15 14 47 47 H 1.08997 * 109.46728 * 150.00075 * 16 15 14 48 48 H 1.08994 * 109.47253 * 210.00345 * 17 15 14 49 49 H 1.08997 * 109.46698 * 330.00602 * 17 15 14 50 50 H 0.97007 * 120.00163 * 180.02562 * 21 20 18 51 51 H 1.08006 * 120.03431 * 179.72533 * 26 14 13 52 52 H 1.08010 * 119.96253 * 180.24794 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1316 0.7057 0.0005 6 6 3.8457 3.0483 0.0011 7 7 5.3088 3.0504 0.1333 8 6 5.8763 4.3283 -0.3170 9 6 5.7408 4.4390 -1.8370 10 6 5.7131 2.7522 1.5138 11 6 7.2013 2.5206 1.5624 12 6 8.0579 3.5829 1.7858 13 6 9.4223 3.3742 1.8305 14 6 9.9341 2.0953 1.6513 15 7 11.3135 1.8808 1.6953 16 6 12.2225 3.0053 1.9313 17 6 11.8514 0.5312 1.5067 18 6 12.1159 0.2961 0.0418 19 1 11.9042 1.0741 -0.6768 20 6 12.6273 -0.9124 -0.3811 21 7 12.8837 -1.8602 0.4938 22 14 12.9545 -1.2040 -2.1969 23 1 14.3414 -0.7853 -2.5234 24 1 12.7879 -2.6473 -2.5043 25 1 11.9946 -0.4114 -3.0065 26 6 9.0710 1.0312 1.4224 27 6 7.7074 1.2460 1.3842 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.3880 2.1185 0.0004 34 1 3.4045 3.5893 0.8382 35 1 3.5647 3.5334 -0.9337 36 1 5.3401 5.1508 0.1564 37 1 6.9299 4.3751 -0.0418 38 1 4.6857 4.4965 -2.1046 39 1 6.2529 5.3369 -2.1829 40 1 6.1874 3.5624 -2.3064 41 1 5.1946 1.8576 1.8590 42 1 5.4549 3.5930 2.1576 43 1 7.6594 4.5770 1.9258 44 1 10.0908 4.2045 2.0045 45 1 12.5060 3.4496 0.9772 46 1 11.7227 3.7535 2.5464 47 1 13.1150 2.6491 2.4457 48 1 12.7820 0.4297 2.0649 49 1 11.1294 -0.2013 1.8677 50 1 13.2438 -2.7104 0.1963 51 1 9.4658 0.0363 1.2783 52 1 7.0355 0.4184 1.2102 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119328104.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:20 Heat of formation + Delta-G solvation = -19.477988 kcal Electronic energy + Delta-G solvation = -28809.405885 eV Core-core repulsion = 25001.085189 eV Total energy + Delta-G solvation = -3808.320695 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.95848 -40.34897 -38.49541 -36.88036 -36.12768 -34.77805 -32.37464 -32.09473 -31.85110 -30.77961 -29.61491 -28.31047 -26.69618 -25.60190 -23.86427 -23.78291 -23.06236 -22.06918 -21.26524 -20.92572 -18.66387 -18.15470 -18.12821 -17.18184 -17.01165 -16.87037 -16.27689 -16.11973 -15.90689 -15.49382 -15.34264 -15.22539 -14.90117 -14.65350 -14.54884 -14.35846 -14.20244 -14.02251 -13.60314 -13.29648 -13.21403 -13.13352 -13.07689 -12.94995 -12.68918 -12.67311 -12.64922 -12.51754 -12.37868 -12.26344 -12.16723 -11.95684 -11.76065 -11.60640 -11.39372 -10.79001 -10.65321 -10.38144 -10.02930 -9.64316 -9.10427 -8.37319 -7.79896 -6.38611 0.71287 0.83551 1.33326 1.35937 1.46842 1.76250 2.19966 2.33031 2.63406 2.95412 3.04485 3.39379 3.89188 4.04615 4.06011 4.16378 4.21244 4.23209 4.23638 4.35011 4.37928 4.42845 4.51101 4.52894 4.56115 4.68037 4.71392 4.73309 4.78637 4.87773 4.91625 4.97552 5.00150 5.03305 5.06720 5.12056 5.17959 5.21947 5.26506 5.33238 5.42620 5.55265 5.58826 5.65801 5.68879 5.95732 6.06240 6.11276 6.22121 6.25706 6.49588 6.70767 6.82000 6.94368 7.32968 7.42736 8.81886 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011076 B = 0.002786 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2527.271182 B =10046.758544 C =11185.708490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.111 3.889 3 N -0.723 5.723 4 C 0.501 3.499 5 O -0.570 6.570 6 C 0.039 3.961 7 N -0.544 5.544 8 C 0.048 3.952 9 C -0.145 4.145 10 C 0.122 3.878 11 C -0.151 4.151 12 C -0.056 4.056 13 C -0.213 4.213 14 C 0.214 3.786 15 N -0.632 5.632 16 C 0.100 3.900 17 C 0.267 3.733 18 C -0.540 4.540 19 H 0.047 0.953 20 C 0.010 3.990 21 N -0.927 5.927 22 Si 0.961 3.039 23 H -0.266 1.266 24 H -0.279 1.279 25 H -0.275 1.275 26 C -0.218 4.218 27 C -0.056 4.056 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.047 0.953 32 H 0.048 0.952 33 H 0.416 0.584 34 H 0.093 0.907 35 H 0.126 0.874 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.034 0.966 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.150 0.850 44 H 0.139 0.861 45 H 0.039 0.961 46 H 0.087 0.913 47 H 0.061 0.939 48 H 0.012 0.988 49 H 0.006 0.994 50 H 0.267 0.733 51 H 0.088 0.912 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.707 16.457 0.937 30.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 N -0.378 5.378 4 C 0.287 3.713 5 O -0.447 6.447 6 C -0.092 4.092 7 N -0.269 5.269 8 C -0.079 4.079 9 C -0.203 4.203 10 C -0.005 4.005 11 C -0.154 4.154 12 C -0.075 4.075 13 C -0.236 4.236 14 C 0.109 3.891 15 N -0.340 5.340 16 C -0.042 4.042 17 C 0.145 3.855 18 C -0.579 4.579 19 H 0.065 0.935 20 C -0.189 4.189 21 N -0.567 5.567 22 Si 0.786 3.214 23 H -0.191 1.191 24 H -0.204 1.204 25 H -0.200 1.200 26 C -0.241 4.241 27 C -0.075 4.075 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.253 0.747 34 H 0.111 0.889 35 H 0.144 0.856 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.053 0.947 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.167 0.833 44 H 0.157 0.843 45 H 0.058 0.942 46 H 0.105 0.895 47 H 0.080 0.920 48 H 0.030 0.970 49 H 0.024 0.976 50 H 0.076 0.924 51 H 0.106 0.894 52 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -24.663 15.209 0.669 28.983 hybrid contribution 0.253 -0.488 -0.489 0.735 sum -24.410 14.721 0.180 28.506 Atomic orbital electron populations 1.21930 0.91604 1.03993 1.03475 1.21281 0.96315 0.82934 1.00764 1.45969 1.06645 1.09449 1.75762 1.21281 0.82362 0.92378 0.75270 1.90753 1.56612 1.47780 1.49598 1.22064 0.88988 0.92572 1.05541 1.61494 1.08243 1.34077 1.23086 1.22218 1.00740 0.88588 0.96370 1.21783 1.02183 1.01363 0.94947 1.20737 0.91123 1.00267 0.88364 1.19434 0.95588 0.92621 1.07741 1.20913 0.91640 0.98561 0.96413 1.20801 0.96555 0.94429 1.11802 1.18182 0.83657 0.94325 0.92947 1.46939 1.02655 1.08786 1.75608 1.21602 0.93388 0.88972 1.00288 1.18773 0.92607 0.79206 0.94927 1.21769 1.42543 0.99575 0.93986 0.93480 1.25795 0.95139 0.95517 1.02405 1.70037 1.45143 1.05724 1.35814 0.85509 0.78821 0.77434 0.79667 1.19104 1.20381 1.19976 1.20710 0.94052 0.98114 1.11178 1.20680 0.93050 0.97512 0.96277 0.90836 0.90881 0.90310 0.93479 0.93369 0.74661 0.88879 0.85624 0.92114 0.90993 0.91405 0.91018 0.94699 0.92173 0.92084 0.83280 0.84346 0.94221 0.89492 0.92019 0.96981 0.97574 0.92389 0.89382 0.88140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 10.03 71.98 0.72 -0.43 16 2 C 0.11 1.74 6.39 86.38 0.55 2.30 16 3 N -0.72 -10.51 5.56 -463.06 -2.57 -13.08 16 4 C 0.50 11.30 7.38 87.66 0.65 11.95 16 5 O -0.57 -20.00 15.49 -3.03 -0.05 -20.04 16 6 C 0.04 0.63 5.32 85.56 0.46 1.09 16 7 N -0.54 -12.99 4.00 -905.35 -3.62 -16.61 16 8 C 0.05 0.93 5.50 86.31 0.48 1.40 16 9 C -0.15 -2.68 9.85 71.98 0.71 -1.97 16 10 C 0.12 3.15 4.76 85.56 0.41 3.56 16 11 C -0.15 -4.93 4.93 -19.84 -0.10 -5.03 16 12 C -0.06 -1.64 7.83 22.25 0.17 -1.46 16 13 C -0.21 -7.25 9.21 22.40 0.21 -7.05 16 14 C 0.21 9.32 6.55 38.22 0.25 9.57 16 15 N -0.63 -29.14 2.99 -726.56 -2.17 -31.31 16 16 C 0.10 3.59 10.23 127.77 1.31 4.90 16 17 C 0.27 14.80 4.95 85.63 0.42 15.23 16 18 C -0.54 -32.08 9.39 25.60 0.24 -31.84 16 19 H 0.05 2.85 7.81 -2.91 -0.02 2.82 16 20 C 0.01 0.62 5.46 84.65 0.46 1.08 16 21 N -0.93 -56.98 13.29 21.44 0.28 -56.70 16 22 Si 0.96 46.57 29.54 68.60 2.03 48.60 16 23 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 24 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 25 H -0.27 -13.31 7.11 99.48 0.71 -12.61 16 26 C -0.22 -10.26 9.20 22.40 0.21 -10.06 16 27 C -0.06 -2.30 9.69 22.25 0.22 -2.08 16 28 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.42 2.66 8.47 -92.71 -0.79 1.87 16 34 H 0.09 0.93 8.00 -2.39 -0.02 0.91 16 35 H 0.13 1.46 6.23 -2.39 -0.01 1.44 16 36 H 0.06 0.81 8.07 -2.39 -0.02 0.79 16 37 H 0.07 1.68 5.22 -2.39 -0.01 1.67 16 38 H 0.07 0.94 6.65 -2.39 -0.02 0.92 16 39 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.06 1.78 6.81 -2.38 -0.02 1.76 16 42 H 0.06 1.20 8.06 -2.39 -0.02 1.18 16 43 H 0.15 3.07 7.77 -2.91 -0.02 3.05 16 44 H 0.14 3.93 6.14 -2.91 -0.02 3.92 16 45 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.09 2.47 6.20 -2.39 -0.01 2.46 16 47 H 0.06 2.15 7.89 -2.39 -0.02 2.13 16 48 H 0.01 0.70 7.89 -2.39 -0.02 0.68 16 49 H 0.01 0.38 6.21 -2.39 -0.01 0.37 16 50 H 0.27 15.41 8.31 -92.70 -0.77 14.64 16 51 H 0.09 4.79 6.15 -2.91 -0.02 4.78 16 52 H 0.10 4.31 8.06 -2.91 -0.02 4.29 16 Total: -1.00 -79.76 413.95 1.38 -78.38 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: 0.12 Total: 19.61 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: 7.36 Total: -8.85 kcal Atomic # 7 Polarization: -109.62 SS G_CDS: -8.08 Total: -117.69 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -0.05 Total: -20.04 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -79.76 1.38 -78.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119328104.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.903 kcal (2) G-P(sol) polarization free energy of solvation -79.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds