Wall clock time and date at job start Tue Mar 31 2020 17:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00004 * 2 1 3 5 5 N 1.46498 * 109.47113 * 174.99658 * 4 2 1 6 6 C 1.34781 * 120.00367 * 179.97438 * 5 4 2 7 7 O 1.21587 * 119.99712 * 0.02562 * 6 5 4 8 8 N 1.34771 * 120.00191 * 179.97438 * 6 5 4 9 9 C 1.46503 * 120.00006 * 180.02562 * 8 6 5 10 10 C 1.52993 * 109.47295 * 180.02562 * 9 8 6 11 11 C 1.52995 * 109.47273 * 180.02562 * 10 9 8 12 12 C 1.50700 * 109.47240 * 179.97438 * 11 10 9 13 13 H 1.07999 * 120.00083 * 0.02562 * 12 11 10 14 14 C 1.37881 * 120.00143 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99887 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00005 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46972 * 90.00466 * 16 14 12 18 18 H 1.48497 * 109.47131 * 210.00314 * 16 14 12 19 19 H 1.48497 * 109.47255 * 330.00196 * 16 14 12 20 20 N 1.46902 * 109.46626 * 240.00176 * 2 1 3 21 21 C 1.46903 * 111.00170 * 306.04234 * 20 2 1 22 22 C 1.46890 * 111.00374 * 70.00094 * 20 2 1 23 23 C 1.50697 * 109.47465 * 169.99557 * 22 20 2 24 24 C 1.38234 * 120.00285 * 269.72841 * 23 22 20 25 25 C 1.38231 * 120.00241 * 179.76698 * 24 23 22 26 26 C 1.38243 * 119.99748 * 0.50066 * 25 24 23 27 27 C 1.38240 * 120.00165 * 359.75274 * 26 25 24 28 28 C 1.38233 * 119.99477 * 359.97438 * 27 26 25 29 29 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 30 30 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 31 31 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47223 * 295.00080 * 4 2 1 33 33 H 1.09006 * 109.47396 * 55.00290 * 4 2 1 34 34 H 0.97004 * 120.00154 * 0.02562 * 5 4 2 35 35 H 0.97004 * 120.00330 * 0.02562 * 8 6 5 36 36 H 1.09001 * 109.47182 * 300.00735 * 9 8 6 37 37 H 1.09003 * 109.46683 * 60.00389 * 9 8 6 38 38 H 1.09001 * 109.47329 * 300.00307 * 10 9 8 39 39 H 1.08999 * 109.47373 * 59.99892 * 10 9 8 40 40 H 1.08999 * 109.47387 * 299.99881 * 11 10 9 41 41 H 1.08996 * 109.47460 * 59.99996 * 11 10 9 42 42 H 0.97001 * 119.99781 * 179.97438 * 15 14 12 43 43 H 1.08997 * 109.46958 * 59.99852 * 21 20 2 44 44 H 1.08998 * 109.47182 * 180.02562 * 21 20 2 45 45 H 1.09004 * 109.47203 * 300.00492 * 21 20 2 46 46 H 1.09002 * 109.47248 * 290.00101 * 22 20 2 47 47 H 1.09002 * 109.47150 * 49.99746 * 22 20 2 48 48 H 1.08000 * 119.99744 * 359.97438 * 24 23 22 49 49 H 1.07995 * 120.00431 * 180.22948 * 25 24 23 50 50 H 1.07998 * 119.99644 * 179.72350 * 26 25 24 51 51 H 1.07994 * 120.00185 * 179.97438 * 27 26 25 52 52 H 1.08000 * 119.99442 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.1732 -1.4283 2.1911 7 8 3.5686 -1.8844 3.1423 8 7 5.5163 -1.5255 2.1368 9 6 6.2479 -2.1803 3.2241 10 6 7.7467 -2.1556 2.9178 11 6 8.5106 -2.8400 4.0530 12 6 9.9869 -2.8162 3.7509 13 1 10.3445 -2.3584 2.8405 14 6 10.8811 -3.3780 4.6374 15 7 10.4457 -3.9351 5.7463 16 14 12.7109 -3.3492 4.2626 17 1 13.3119 -2.1131 4.8248 18 1 13.3600 -4.5371 4.8730 19 1 12.9154 -3.3745 2.7919 20 7 2.0196 -0.6925 -1.1995 21 6 1.4343 -2.0355 -1.3079 22 6 1.7529 0.0972 -2.4090 23 6 2.4773 -0.5163 -3.5794 24 6 3.7633 -0.1119 -3.8854 25 6 4.4296 -0.6781 -4.9560 26 6 3.8061 -1.6413 -5.7271 27 6 2.5181 -2.0419 -5.4244 28 6 1.8540 -1.4797 -4.3503 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7517 -0.1583 2.1370 33 1 1.6055 -1.7199 1.2951 34 1 3.9825 -0.4622 0.4318 35 1 5.9987 -1.1620 1.3777 36 1 6.0597 -1.6517 4.1586 37 1 5.9127 -3.2133 3.3171 38 1 7.9353 -2.6839 1.9832 39 1 8.0816 -1.1225 2.8250 40 1 8.3222 -2.3120 4.9878 41 1 8.1757 -3.8731 4.1454 42 1 11.0748 -4.3307 6.3698 43 1 0.3490 -1.9549 -1.3693 44 1 1.8139 -2.5261 -2.2041 45 1 1.7059 -2.6221 -0.4302 46 1 0.6813 0.1053 -2.6087 47 1 2.1025 1.1188 -2.2604 48 1 4.2487 0.6440 -3.2859 49 1 5.4357 -0.3648 -5.1928 50 1 4.3250 -2.0804 -6.5663 51 1 2.0308 -2.7940 -6.0270 52 1 0.8476 -1.7924 -4.1140 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171847711.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:20 Heat of formation + Delta-G solvation = -14.217547 kcal Electronic energy + Delta-G solvation = -27909.735774 eV Core-core repulsion = 24101.643188 eV Total energy + Delta-G solvation = -3808.092586 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.19819 -39.57551 -38.34796 -35.44412 -34.42468 -33.24975 -32.54348 -31.25862 -31.04467 -30.29258 -27.70003 -27.16818 -25.91176 -24.62384 -22.87167 -22.84043 -21.47440 -20.69056 -20.28202 -20.12494 -17.84302 -17.12206 -16.84838 -16.55999 -16.06821 -15.76239 -15.58615 -15.33125 -14.70672 -14.58919 -14.44277 -14.26575 -14.03664 -13.86078 -13.70441 -13.52832 -13.21914 -12.91553 -12.77601 -12.38467 -12.32287 -12.22798 -11.96191 -11.87043 -11.74315 -11.58827 -11.29492 -11.25806 -11.08765 -10.86848 -10.65838 -10.55352 -9.99114 -9.79672 -9.38499 -9.21925 -9.14721 -9.07919 -9.02603 -8.67458 -8.44358 -8.33354 -5.98095 -4.00878 1.00016 1.09752 2.95669 3.30133 3.33269 3.39485 3.42537 3.52750 3.77054 4.32275 4.39485 4.44992 4.47955 4.56642 4.69316 4.71154 4.79890 4.85856 4.87149 4.97438 5.14223 5.19320 5.24387 5.25559 5.31996 5.37579 5.37685 5.53153 5.60499 5.67404 5.71400 5.73768 5.78402 5.83692 5.89756 6.13150 6.21333 6.26570 6.27373 6.53621 6.60789 6.63929 6.68633 6.70135 6.72854 6.92256 7.10111 7.25570 7.68635 7.82131 8.01384 8.32873 8.42564 8.91268 9.05939 9.62949 11.13237 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011009 B = 0.002076 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2542.689469 B =13482.899606 C =15545.630508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.067 3.933 3 H 0.090 0.910 4 C 0.151 3.849 5 N -0.739 5.739 6 C 0.699 3.301 7 O -0.600 6.600 8 N -0.742 5.742 9 C 0.136 3.864 10 C -0.120 4.120 11 C 0.024 3.976 12 C -0.521 4.521 13 H 0.055 0.945 14 C 0.056 3.944 15 N -0.894 5.894 16 Si 0.893 3.107 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 N -0.526 5.526 21 C 0.013 3.987 22 C 0.092 3.908 23 C -0.078 4.078 24 C -0.098 4.098 25 C -0.120 4.120 26 C -0.121 4.121 27 C -0.122 4.122 28 C -0.114 4.114 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.401 0.599 35 H 0.393 0.607 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.019 0.981 41 H 0.019 0.981 42 H 0.261 0.739 43 H 0.031 0.969 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.045 0.955 47 H 0.083 0.917 48 H 0.123 0.877 49 H 0.122 0.878 50 H 0.120 0.880 51 H 0.119 0.881 52 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.439 9.981 -23.376 33.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.042 4.042 3 H 0.108 0.892 4 C 0.026 3.974 5 N -0.396 5.396 6 C 0.398 3.602 7 O -0.479 6.479 8 N -0.396 5.396 9 C 0.013 3.987 10 C -0.158 4.158 11 C -0.014 4.014 12 C -0.559 4.559 13 H 0.073 0.927 14 C -0.145 4.145 15 N -0.533 5.533 16 Si 0.721 3.279 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 N -0.250 5.250 21 C -0.134 4.134 22 C -0.035 4.035 23 C -0.078 4.078 24 C -0.117 4.117 25 C -0.138 4.138 26 C -0.139 4.139 27 C -0.140 4.140 28 C -0.133 4.133 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.235 0.765 35 H 0.226 0.774 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.037 0.963 41 H 0.037 0.963 42 H 0.070 0.930 43 H 0.050 0.950 44 H 0.090 0.910 45 H 0.091 0.909 46 H 0.063 0.937 47 H 0.101 0.899 48 H 0.141 0.859 49 H 0.140 0.860 50 H 0.138 0.862 51 H 0.138 0.862 52 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -22.429 9.398 -22.248 32.960 hybrid contribution 0.630 0.298 -0.957 1.184 sum -21.799 9.696 -23.206 33.282 Atomic orbital electron populations 1.22388 0.96317 1.02943 1.02769 1.22034 0.93564 0.98595 0.89969 0.89182 1.21122 0.79932 1.00445 0.95930 1.44893 1.06946 1.63921 1.23852 1.16039 0.82068 0.79223 0.82826 1.90905 1.68070 1.54318 1.34600 1.45352 1.04819 1.63506 1.25967 1.21469 0.92040 0.96842 0.88370 1.21878 0.91236 1.01093 1.01582 1.19028 0.94154 0.95737 0.92487 1.21213 0.91734 1.37290 1.05683 0.92669 1.25036 0.98963 0.95396 0.95129 1.69971 1.34530 1.38349 1.10459 0.86585 0.85411 0.77502 0.78434 1.20685 1.21235 1.19910 1.62177 1.58618 1.02981 1.01191 1.22561 0.97089 0.90347 1.03450 1.21065 0.97583 0.97000 0.87857 1.19699 0.94930 0.97197 0.95982 1.21034 0.93944 0.99859 0.96832 1.21197 0.99955 0.96998 0.95641 1.21180 0.95240 0.97641 0.99834 1.21118 0.95221 1.00084 0.97604 1.21038 0.99855 0.96813 0.95593 0.91379 0.92124 0.91638 0.91407 0.91889 0.76463 0.77362 0.92105 0.92117 0.92808 0.92821 0.96267 0.96260 0.92964 0.95037 0.90951 0.90865 0.93733 0.89884 0.85920 0.86005 0.86225 0.86249 0.86524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.02 8.44 37.16 0.31 -0.70 16 2 C 0.07 0.45 2.47 -67.71 -0.17 0.28 16 3 H 0.09 0.55 7.93 -51.93 -0.41 0.13 16 4 C 0.15 1.48 4.84 -4.04 -0.02 1.46 16 5 N -0.74 -8.49 5.39 -65.23 -0.35 -8.84 16 6 C 0.70 11.21 8.57 -86.92 -0.74 10.47 16 7 O -0.60 -12.24 16.34 5.29 0.09 -12.16 16 8 N -0.74 -11.41 5.56 -65.23 -0.36 -11.78 16 9 C 0.14 2.53 5.67 -4.04 -0.02 2.51 16 10 C -0.12 -2.42 5.27 -26.74 -0.14 -2.56 16 11 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 12 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 16 13 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.89 -27.15 13.29 55.43 0.74 -26.41 16 16 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 20 N -0.53 -3.67 4.14 -236.33 -0.98 -4.65 16 21 C 0.01 0.10 8.43 60.07 0.51 0.61 16 22 C 0.09 0.56 4.69 -4.98 -0.02 0.54 16 23 C -0.08 -0.56 4.89 -104.62 -0.51 -1.08 16 24 C -0.10 -0.74 9.70 -39.59 -0.38 -1.12 16 25 C -0.12 -0.90 10.05 -39.58 -0.40 -1.30 16 26 C -0.12 -0.88 10.05 -39.58 -0.40 -1.28 16 27 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16 28 C -0.11 -0.81 7.90 -39.58 -0.31 -1.13 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.29 6.91 -51.93 -0.36 -0.06 16 31 H 0.06 0.39 6.33 -51.93 -0.33 0.06 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.70 6.80 -51.93 -0.35 0.34 16 34 H 0.40 3.84 8.15 -40.82 -0.33 3.51 16 35 H 0.39 4.95 8.49 -40.82 -0.35 4.60 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 38 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 43 H 0.03 0.20 6.21 -51.93 -0.32 -0.12 16 44 H 0.07 0.58 5.89 -51.93 -0.31 0.27 16 45 H 0.07 0.66 6.58 -51.93 -0.34 0.32 16 46 H 0.04 0.25 7.00 -51.93 -0.36 -0.11 16 47 H 0.08 0.45 7.87 -51.93 -0.41 0.04 16 48 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 49 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 50 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 51 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 52 H 0.12 0.68 7.98 -52.49 -0.42 0.26 16 LS Contribution 415.70 15.07 6.26 6.26 Total: -1.00 -33.82 415.70 -11.78 -45.61 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -8.91 Total: 2.90 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: -3.25 Total: -7.63 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: -0.96 Total: -51.67 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: 0.09 Total: -12.16 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -33.82 -11.78 -45.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171847711.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.391 kcal (2) G-P(sol) polarization free energy of solvation -33.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds