Wall clock time and date at job start Tue Mar 31 2020 17:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00004 * 2 1 3 5 5 N 1.46498 * 109.47113 * 174.99658 * 4 2 1 6 6 C 1.34781 * 120.00367 * 179.97438 * 5 4 2 7 7 O 1.21587 * 119.99712 * 0.02562 * 6 5 4 8 8 N 1.34771 * 120.00191 * 179.97438 * 6 5 4 9 9 C 1.46503 * 120.00006 * 180.02562 * 8 6 5 10 10 C 1.52993 * 109.47295 * 180.02562 * 9 8 6 11 11 C 1.52995 * 109.47273 * 180.02562 * 10 9 8 12 12 C 1.50700 * 109.47240 * 179.97438 * 11 10 9 13 13 H 1.07999 * 120.00083 * 0.02562 * 12 11 10 14 14 C 1.37881 * 120.00143 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99887 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00005 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46972 * 90.00466 * 16 14 12 18 18 H 1.48497 * 109.47131 * 210.00314 * 16 14 12 19 19 H 1.48497 * 109.47255 * 330.00196 * 16 14 12 20 20 N 1.46902 * 109.46626 * 240.00176 * 2 1 3 21 21 C 1.46903 * 111.00170 * 306.04234 * 20 2 1 22 22 C 1.46890 * 111.00374 * 70.00094 * 20 2 1 23 23 C 1.50697 * 109.47465 * 169.99557 * 22 20 2 24 24 C 1.38234 * 120.00285 * 269.72841 * 23 22 20 25 25 C 1.38231 * 120.00241 * 179.76698 * 24 23 22 26 26 C 1.38243 * 119.99748 * 0.50066 * 25 24 23 27 27 C 1.38240 * 120.00165 * 359.75274 * 26 25 24 28 28 C 1.38233 * 119.99477 * 359.97438 * 27 26 25 29 29 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 30 30 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 31 31 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47223 * 295.00080 * 4 2 1 33 33 H 1.09006 * 109.47396 * 55.00290 * 4 2 1 34 34 H 0.97004 * 120.00154 * 0.02562 * 5 4 2 35 35 H 0.97004 * 120.00330 * 0.02562 * 8 6 5 36 36 H 1.09001 * 109.47182 * 300.00735 * 9 8 6 37 37 H 1.09003 * 109.46683 * 60.00389 * 9 8 6 38 38 H 1.09001 * 109.47329 * 300.00307 * 10 9 8 39 39 H 1.08999 * 109.47373 * 59.99892 * 10 9 8 40 40 H 1.08999 * 109.47387 * 299.99881 * 11 10 9 41 41 H 1.08996 * 109.47460 * 59.99996 * 11 10 9 42 42 H 0.97001 * 119.99781 * 179.97438 * 15 14 12 43 43 H 1.08997 * 109.46958 * 59.99852 * 21 20 2 44 44 H 1.08998 * 109.47182 * 180.02562 * 21 20 2 45 45 H 1.09004 * 109.47203 * 300.00492 * 21 20 2 46 46 H 1.09002 * 109.47248 * 290.00101 * 22 20 2 47 47 H 1.09002 * 109.47150 * 49.99746 * 22 20 2 48 48 H 1.08000 * 119.99744 * 359.97438 * 24 23 22 49 49 H 1.07995 * 120.00431 * 180.22948 * 25 24 23 50 50 H 1.07998 * 119.99644 * 179.72350 * 26 25 24 51 51 H 1.07994 * 120.00185 * 179.97438 * 27 26 25 52 52 H 1.08000 * 119.99442 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.1732 -1.4283 2.1911 7 8 3.5686 -1.8844 3.1423 8 7 5.5163 -1.5255 2.1368 9 6 6.2479 -2.1803 3.2241 10 6 7.7467 -2.1556 2.9178 11 6 8.5106 -2.8400 4.0530 12 6 9.9869 -2.8162 3.7509 13 1 10.3445 -2.3584 2.8405 14 6 10.8811 -3.3780 4.6374 15 7 10.4457 -3.9351 5.7463 16 14 12.7109 -3.3492 4.2626 17 1 13.3119 -2.1131 4.8248 18 1 13.3600 -4.5371 4.8730 19 1 12.9154 -3.3745 2.7919 20 7 2.0196 -0.6925 -1.1995 21 6 1.4343 -2.0355 -1.3079 22 6 1.7529 0.0972 -2.4090 23 6 2.4773 -0.5163 -3.5794 24 6 3.7633 -0.1119 -3.8854 25 6 4.4296 -0.6781 -4.9560 26 6 3.8061 -1.6413 -5.7271 27 6 2.5181 -2.0419 -5.4244 28 6 1.8540 -1.4797 -4.3503 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7517 -0.1583 2.1370 33 1 1.6055 -1.7199 1.2951 34 1 3.9825 -0.4622 0.4318 35 1 5.9987 -1.1620 1.3777 36 1 6.0597 -1.6517 4.1586 37 1 5.9127 -3.2133 3.3171 38 1 7.9353 -2.6839 1.9832 39 1 8.0816 -1.1225 2.8250 40 1 8.3222 -2.3120 4.9878 41 1 8.1757 -3.8731 4.1454 42 1 11.0748 -4.3307 6.3698 43 1 0.3490 -1.9549 -1.3693 44 1 1.8139 -2.5261 -2.2041 45 1 1.7059 -2.6221 -0.4302 46 1 0.6813 0.1053 -2.6087 47 1 2.1025 1.1188 -2.2604 48 1 4.2487 0.6440 -3.2859 49 1 5.4357 -0.3648 -5.1928 50 1 4.3250 -2.0804 -6.5663 51 1 2.0308 -2.7940 -6.0270 52 1 0.8476 -1.7924 -4.1140 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171847711.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:19 Heat of formation + Delta-G solvation = -36.194097 kcal Electronic energy + Delta-G solvation = -27910.688748 eV Core-core repulsion = 24101.643188 eV Total energy + Delta-G solvation = -3809.045560 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.10025 -40.42298 -39.00827 -36.99022 -35.46760 -35.14803 -33.41837 -32.67031 -31.75425 -30.91891 -28.76893 -28.17997 -27.03352 -25.35197 -24.61202 -23.35099 -22.26933 -22.02112 -21.71864 -20.79327 -19.05022 -18.51272 -17.64985 -17.48181 -17.30881 -16.69292 -16.50958 -16.25932 -16.24312 -15.60301 -15.50694 -15.31682 -15.01260 -14.89214 -14.25460 -14.24554 -14.19785 -14.04787 -13.71603 -13.52980 -13.43130 -13.32298 -12.96369 -12.85286 -12.72915 -12.52674 -12.49289 -12.38352 -12.34352 -11.82209 -11.76364 -11.65241 -11.64627 -11.62376 -11.27994 -11.11481 -10.53890 -10.31496 -9.74195 -9.68654 -9.63125 -9.19793 -8.17929 -6.29374 0.47932 0.57564 1.42496 1.44197 1.55114 1.80249 2.22435 2.43317 2.75183 3.15664 3.20640 3.45927 3.77521 3.86209 4.01481 4.12305 4.20563 4.22096 4.25812 4.31668 4.32289 4.38611 4.42480 4.58824 4.62574 4.64822 4.69074 4.74661 4.78990 4.81178 4.88336 4.98314 5.02644 5.04417 5.12403 5.18808 5.18965 5.23116 5.29592 5.49826 5.57061 5.60209 5.63030 5.69945 5.73109 5.75272 5.85991 6.07496 6.09441 6.12032 6.20399 6.24675 6.87872 7.21179 7.39993 7.66733 8.94293 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011009 B = 0.002076 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2542.689469 B =13482.899606 C =15545.630508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.078 3.922 3 H 0.105 0.895 4 C 0.149 3.851 5 N -0.718 5.718 6 C 0.695 3.305 7 O -0.647 6.647 8 N -0.731 5.731 9 C 0.151 3.849 10 C -0.099 4.099 11 C 0.023 3.977 12 C -0.540 4.540 13 H 0.067 0.933 14 C -0.005 4.005 15 N -0.935 5.935 16 Si 0.968 3.032 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.260 1.260 20 N -0.533 5.533 21 C 0.018 3.982 22 C 0.097 3.903 23 C -0.085 4.085 24 C -0.110 4.110 25 C -0.134 4.134 26 C -0.133 4.133 27 C -0.133 4.133 28 C -0.122 4.122 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.049 0.951 34 H 0.414 0.586 35 H 0.410 0.590 36 H 0.046 0.954 37 H 0.043 0.957 38 H 0.066 0.934 39 H 0.068 0.932 40 H -0.008 1.008 41 H -0.009 1.009 42 H 0.263 0.737 43 H 0.043 0.957 44 H 0.067 0.933 45 H 0.053 0.947 46 H 0.054 0.946 47 H 0.094 0.906 48 H 0.132 0.868 49 H 0.132 0.868 50 H 0.132 0.868 51 H 0.133 0.867 52 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.285 11.481 -25.620 35.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.030 4.030 3 H 0.123 0.877 4 C 0.024 3.976 5 N -0.374 5.374 6 C 0.395 3.605 7 O -0.529 6.529 8 N -0.387 5.387 9 C 0.026 3.974 10 C -0.137 4.137 11 C -0.014 4.014 12 C -0.578 4.578 13 H 0.085 0.915 14 C -0.202 4.202 15 N -0.576 5.576 16 Si 0.792 3.208 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.184 1.184 20 N -0.256 5.256 21 C -0.130 4.130 22 C -0.030 4.030 23 C -0.086 4.086 24 C -0.129 4.129 25 C -0.152 4.152 26 C -0.152 4.152 27 C -0.151 4.151 28 C -0.141 4.141 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.251 0.749 35 H 0.246 0.754 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.011 0.989 41 H 0.010 0.990 42 H 0.072 0.928 43 H 0.062 0.938 44 H 0.085 0.915 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.112 0.888 48 H 0.150 0.850 49 H 0.149 0.851 50 H 0.149 0.851 51 H 0.151 0.849 52 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -22.283 10.941 -24.568 34.926 hybrid contribution 0.518 -0.180 -0.279 0.616 sum -21.765 10.761 -24.847 34.740 Atomic orbital electron populations 1.22347 0.95127 1.02871 1.03619 1.21940 0.94324 0.98528 0.88251 0.87713 1.21262 0.78571 1.00113 0.97648 1.44758 1.07646 1.62213 1.22790 1.16217 0.82008 0.79225 0.83087 1.90877 1.68965 1.56363 1.36709 1.45012 1.04772 1.63238 1.25686 1.21038 0.91430 0.96027 0.88882 1.21576 0.91274 1.01282 0.99600 1.18944 0.94489 0.94418 0.93583 1.21677 0.92869 1.37133 1.06089 0.91524 1.26044 1.04452 0.94880 0.94846 1.70120 1.36435 1.39364 1.11664 0.85401 0.78795 0.77655 0.78907 1.19764 1.21056 1.18422 1.62129 1.58889 1.02888 1.01721 1.22460 0.97847 0.90479 1.02168 1.21067 0.98021 0.97120 0.86811 1.19873 0.95009 0.97288 0.96398 1.21242 0.94279 1.00252 0.97102 1.21434 1.00614 0.97243 0.95876 1.21432 0.95584 0.97804 1.00342 1.21380 0.95381 1.00448 0.97911 1.21242 1.00423 0.96802 0.95608 0.90988 0.90801 0.92191 0.91948 0.93295 0.74944 0.75351 0.93597 0.93836 0.91532 0.91315 0.98920 0.99025 0.92831 0.93841 0.91472 0.92834 0.92837 0.88756 0.85050 0.85056 0.85052 0.84938 0.85503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.58 8.44 71.98 0.61 -0.98 16 2 C 0.08 0.87 2.47 44.92 0.11 0.98 16 3 H 0.10 0.93 7.93 -2.39 -0.02 0.92 16 4 C 0.15 2.78 4.84 86.38 0.42 3.20 16 5 N -0.72 -15.60 5.39 -478.53 -2.58 -18.18 16 6 C 0.70 22.00 8.57 179.05 1.53 23.53 16 7 O -0.65 -26.83 16.34 -3.99 -0.07 -26.90 16 8 N -0.73 -21.81 5.56 -478.54 -2.66 -24.48 16 9 C 0.15 5.67 5.67 86.38 0.49 6.16 16 10 C -0.10 -3.95 5.27 30.59 0.16 -3.79 16 11 C 0.02 1.24 4.97 29.85 0.15 1.39 16 12 C -0.54 -30.52 9.11 25.60 0.23 -30.29 16 13 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 14 C 0.00 -0.27 5.46 84.66 0.46 0.19 16 15 N -0.94 -57.85 13.29 21.45 0.28 -57.57 16 16 Si 0.97 44.22 29.54 68.60 2.03 46.24 16 17 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 18 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 19 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 20 N -0.53 -6.36 4.14 -901.62 -3.74 -10.09 16 21 C 0.02 0.25 8.43 127.69 1.08 1.33 16 22 C 0.10 0.93 4.69 85.56 0.40 1.33 16 23 C -0.09 -1.09 4.89 -19.87 -0.10 -1.19 16 24 C -0.11 -1.50 9.70 22.27 0.22 -1.28 16 25 C -0.13 -1.86 10.05 22.27 0.22 -1.63 16 26 C -0.13 -1.81 10.05 22.27 0.22 -1.59 16 27 C -0.13 -1.74 10.05 22.27 0.22 -1.52 16 28 C -0.12 -1.56 7.90 22.27 0.18 -1.39 16 29 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.07 0.49 6.91 -2.39 -0.02 0.47 16 31 H 0.06 0.61 6.33 -2.39 -0.02 0.59 16 32 H 0.06 1.26 8.14 -2.39 -0.02 1.25 16 33 H 0.05 1.08 6.80 -2.38 -0.02 1.06 16 34 H 0.41 7.02 8.15 -92.71 -0.76 6.27 16 35 H 0.41 9.44 8.49 -92.71 -0.79 8.66 16 36 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 39 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 40 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 41 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 42 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 43 H 0.04 0.49 6.21 -2.39 -0.01 0.47 16 44 H 0.07 1.00 5.89 -2.39 -0.01 0.99 16 45 H 0.05 0.95 6.58 -2.39 -0.02 0.94 16 46 H 0.05 0.44 7.00 -2.39 -0.02 0.42 16 47 H 0.09 0.72 7.87 -2.39 -0.02 0.70 16 48 H 0.13 1.45 8.06 -2.91 -0.02 1.42 16 49 H 0.13 1.44 8.06 -2.91 -0.02 1.42 16 50 H 0.13 1.34 8.06 -2.91 -0.02 1.32 16 51 H 0.13 1.26 8.06 -2.91 -0.02 1.24 16 52 H 0.13 1.27 7.98 -2.91 -0.02 1.25 16 Total: -1.00 -74.06 415.70 -0.76 -74.82 By element: Atomic # 1 Polarization: 22.31 SS G_CDS: -0.63 Total: 21.68 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: 6.61 Total: -5.54 kcal Atomic # 7 Polarization: -101.62 SS G_CDS: -8.69 Total: -110.31 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: -0.07 Total: -26.90 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Total: -74.06 -0.76 -74.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171847711.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.625 kcal (2) G-P(sol) polarization free energy of solvation -74.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds