Wall clock time and date at job start Tue Mar 31 2020 17:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47200 * 2 1 4 4 C 1.53003 * 109.46989 * 240.00458 * 2 1 3 5 5 N 1.46901 * 109.47130 * 184.15659 * 4 2 1 6 6 C 1.46892 * 111.00036 * 159.85495 * 5 4 2 7 7 C 1.46899 * 110.99531 * 283.80798 * 5 4 2 8 8 C 1.50711 * 109.46787 * 170.00041 * 7 5 4 9 9 C 1.38224 * 119.99946 * 89.99916 * 8 7 5 10 10 C 1.38239 * 119.99965 * 179.97438 * 9 8 7 11 11 C 1.38237 * 120.00031 * 0.07083 * 10 9 8 12 12 C 1.38238 * 119.99633 * 359.90422 * 11 10 9 13 13 C 1.38233 * 119.99594 * 269.97655 * 8 7 5 14 14 N 1.46496 * 109.47235 * 120.00268 * 2 1 3 15 15 C 1.34773 * 119.99934 * 271.63965 * 14 2 1 16 16 O 1.21589 * 120.00032 * 359.97438 * 15 14 2 17 17 N 1.34777 * 119.99802 * 180.02562 * 15 14 2 18 18 C 1.46502 * 119.99936 * 179.97438 * 17 15 14 19 19 C 1.52999 * 109.47101 * 179.97438 * 18 17 15 20 20 C 1.53003 * 109.47036 * 179.97438 * 19 18 17 21 21 C 1.50702 * 109.46993 * 180.02562 * 20 19 18 22 22 H 1.07992 * 120.00101 * 359.97438 * 21 20 19 23 23 C 1.37883 * 119.99791 * 179.97438 * 21 20 19 24 24 N 1.31509 * 119.99899 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 119.99814 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46754 * 60.00280 * 25 23 21 27 27 H 1.48501 * 109.47082 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.47348 * 300.00228 * 25 23 21 29 29 H 1.09002 * 109.47099 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47182 * 299.99678 * 1 2 3 31 31 H 1.09004 * 109.47131 * 59.99863 * 1 2 3 32 32 H 1.08998 * 109.47322 * 64.15589 * 4 2 1 33 33 H 1.08999 * 109.47111 * 304.15671 * 4 2 1 34 34 H 1.09001 * 109.47130 * 189.47192 * 6 5 4 35 35 H 1.09001 * 109.47343 * 309.46917 * 6 5 4 36 36 H 1.09000 * 109.47462 * 69.47504 * 6 5 4 37 37 H 1.08997 * 109.47620 * 50.00537 * 7 5 4 38 38 H 1.08999 * 109.47536 * 289.99619 * 7 5 4 39 39 H 1.07999 * 120.00336 * 359.69875 * 9 8 7 40 40 H 1.08003 * 119.99916 * 179.97438 * 10 9 8 41 41 H 1.07995 * 119.99867 * 179.97438 * 11 10 9 42 42 H 1.08001 * 119.99796 * 180.02562 * 12 11 10 43 43 H 1.08003 * 120.00508 * 0.02562 * 13 8 7 44 44 H 0.97002 * 120.00155 * 91.63289 * 14 2 1 45 45 H 0.97002 * 120.00287 * 359.97438 * 17 15 14 46 46 H 1.09001 * 109.47022 * 299.99734 * 18 17 15 47 47 H 1.09002 * 109.47325 * 59.99182 * 18 17 15 48 48 H 1.09001 * 109.47246 * 299.99941 * 19 18 17 49 49 H 1.09001 * 109.46850 * 60.00088 * 19 18 17 50 50 H 1.09001 * 109.47114 * 300.00094 * 20 19 18 51 51 H 1.08995 * 109.47418 * 59.99976 * 20 19 18 52 52 H 0.96999 * 120.00342 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5056 -0.8087 -1.2002 6 6 3.9995 -1.8703 -2.0873 7 6 4.1214 0.4831 -1.5315 8 6 5.5980 0.4264 -1.2351 9 6 6.4839 0.0152 -2.2131 10 6 7.8384 -0.0364 -1.9414 11 6 8.3067 0.3219 -0.6911 12 6 7.4206 0.7337 0.2868 13 6 6.0663 0.7861 0.0148 14 7 2.0184 -0.6906 1.1961 15 6 2.2115 -0.0035 2.3393 16 8 1.9809 1.1897 2.3778 17 7 2.6613 -0.6388 3.4396 18 6 2.8718 0.1081 4.6821 19 6 3.3806 -0.8417 5.7683 20 6 3.6011 -0.0614 7.0658 21 6 4.1029 -0.9969 8.1354 22 1 4.2495 -2.0433 7.9122 23 6 4.3749 -0.5168 9.3990 24 7 4.1968 0.7576 9.6706 25 14 4.9962 -1.6765 10.7250 26 1 6.2785 -2.2854 10.2889 27 1 5.2103 -0.9192 11.9843 28 1 3.9933 -2.7470 10.9561 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.7388 -0.1661 -2.1377 33 1 1.6171 -1.7251 -1.2874 34 1 5.0632 -2.0276 -1.9084 35 1 3.4568 -2.7939 -1.8859 36 1 3.8452 -1.5772 -3.1257 37 1 3.6608 1.2693 -0.9333 38 1 3.9713 0.6966 -2.5898 39 1 6.1176 -0.2701 -3.1882 40 1 8.5306 -0.3581 -2.7055 41 1 9.3647 0.2813 -0.4787 42 1 7.7865 1.0140 1.2636 43 1 5.3741 1.1073 0.7790 44 1 2.2026 -1.6425 1.1653 45 1 2.8456 -1.5907 3.4088 46 1 3.6073 0.8947 4.5131 47 1 1.9300 0.5542 5.0020 48 1 2.6449 -1.6280 5.9372 49 1 4.3224 -1.2879 5.4486 50 1 4.3371 0.7246 6.8965 51 1 2.6597 0.3851 7.3856 52 1 4.3885 1.0955 10.5594 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181316797.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:59 Heat of formation + Delta-G solvation = -17.574008 kcal Electronic energy + Delta-G solvation = -28481.443870 eV Core-core repulsion = 24673.205737 eV Total energy + Delta-G solvation = -3808.238133 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.03001 -39.49668 -37.81492 -35.61422 -34.73079 -33.24954 -31.98514 -31.41382 -31.03536 -30.20584 -27.62636 -26.78900 -26.48138 -23.42790 -22.91872 -22.63000 -21.53183 -20.89704 -20.56370 -20.18028 -17.99272 -16.99946 -16.60125 -16.18079 -16.02849 -15.66797 -15.30621 -15.26251 -14.71707 -14.60785 -14.48571 -14.23955 -13.88911 -13.79496 -13.54472 -13.22896 -12.99547 -12.76733 -12.67049 -12.31627 -12.30899 -12.21303 -12.03710 -11.86199 -11.74006 -11.58082 -11.15377 -11.10893 -10.89525 -10.84770 -10.65453 -10.58184 -9.94422 -9.79425 -9.37809 -9.09224 -9.05734 -9.01114 -8.97933 -8.61360 -8.44466 -8.33308 -5.98161 -4.01048 1.16244 1.27238 2.97802 3.34395 3.38975 3.40936 3.41994 3.56031 3.85576 4.45388 4.45964 4.53446 4.59032 4.62711 4.85750 4.86874 4.89994 5.00436 5.07402 5.10326 5.23049 5.26290 5.32133 5.35514 5.37440 5.44738 5.52441 5.53227 5.61459 5.76268 5.84107 5.89435 5.89821 5.90933 6.05121 6.26739 6.28781 6.39685 6.46370 6.58387 6.64660 6.70182 6.71398 6.76288 6.86877 6.92836 7.10514 7.26123 7.68202 7.81989 8.01225 8.34455 8.42482 8.94312 9.05621 9.62767 11.13156 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.010294 B = 0.002479 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2719.353182 B =11294.205093 C =13244.339890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.166 3.834 3 H 0.087 0.913 4 C 0.044 3.956 5 N -0.530 5.530 6 C 0.023 3.977 7 C 0.093 3.907 8 C -0.078 4.078 9 C -0.116 4.116 10 C -0.125 4.125 11 C -0.121 4.121 12 C -0.118 4.118 13 C -0.092 4.092 14 N -0.730 5.730 15 C 0.703 3.297 16 O -0.600 6.600 17 N -0.743 5.743 18 C 0.137 3.863 19 C -0.120 4.120 20 C 0.025 3.975 21 C -0.522 4.522 22 H 0.054 0.946 23 C 0.057 3.943 24 N -0.894 5.894 25 Si 0.893 3.107 26 H -0.277 1.277 27 H -0.287 1.287 28 H -0.277 1.277 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.050 0.950 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.023 0.977 37 H 0.086 0.914 38 H 0.041 0.959 39 H 0.115 0.885 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.123 0.877 43 H 0.124 0.876 44 H 0.394 0.606 45 H 0.393 0.607 46 H 0.060 0.940 47 H 0.060 0.940 48 H 0.053 0.947 49 H 0.053 0.947 50 H 0.019 0.981 51 H 0.019 0.981 52 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.096 -4.520 -29.834 30.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.060 3.940 3 H 0.105 0.895 4 C -0.084 4.084 5 N -0.253 5.253 6 C -0.125 4.125 7 C -0.034 4.034 8 C -0.078 4.078 9 C -0.135 4.135 10 C -0.143 4.143 11 C -0.139 4.139 12 C -0.136 4.136 13 C -0.110 4.110 14 N -0.385 5.385 15 C 0.403 3.597 16 O -0.479 6.479 17 N -0.397 5.397 18 C 0.014 3.986 19 C -0.158 4.158 20 C -0.013 4.013 21 C -0.560 4.560 22 H 0.073 0.927 23 C -0.144 4.144 24 N -0.533 5.533 25 Si 0.720 3.280 26 H -0.203 1.203 27 H -0.213 1.213 28 H -0.203 1.203 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.042 0.958 37 H 0.104 0.896 38 H 0.060 0.940 39 H 0.133 0.867 40 H 0.136 0.864 41 H 0.138 0.862 42 H 0.141 0.859 43 H 0.142 0.858 44 H 0.228 0.772 45 H 0.226 0.774 46 H 0.078 0.922 47 H 0.078 0.922 48 H 0.071 0.929 49 H 0.072 0.928 50 H 0.037 0.963 51 H 0.037 0.963 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.170 -3.381 -29.160 29.356 hybrid contribution 0.370 -1.334 -0.022 1.385 sum 0.200 -4.715 -29.182 29.561 Atomic orbital electron populations 1.22196 0.95441 1.02039 1.02639 1.20692 0.92980 0.97336 0.83007 0.89510 1.22522 0.87677 1.01372 0.96846 1.61903 1.05276 1.05098 1.53038 1.22472 1.01883 0.94467 0.93706 1.21114 0.91262 0.91942 0.99063 1.19667 0.94545 0.99542 0.94093 1.20989 0.93328 1.00411 0.98773 1.21076 0.95411 1.00824 0.97035 1.21171 0.99695 0.99416 0.93603 1.21251 0.93467 0.99421 0.99479 1.21114 0.95564 0.98232 0.96107 1.44875 1.72186 1.11878 1.09549 1.15993 0.78169 0.85248 0.80323 1.90895 1.59092 1.13510 1.84408 1.45352 1.71085 1.12306 1.10941 1.21445 1.00732 0.94869 0.81566 1.21879 0.99666 0.98201 0.96044 1.19016 0.97297 0.95350 0.89634 1.21180 1.44251 0.95084 0.95524 0.92729 1.25024 0.95713 0.95067 0.98640 1.69953 1.48851 1.13081 1.21436 0.86653 0.79360 0.80861 0.81079 1.20252 1.21294 1.20273 0.92560 0.91543 0.92002 0.93137 0.90180 0.90902 0.91478 0.95799 0.89593 0.94045 0.86707 0.86374 0.86245 0.85850 0.85840 0.77213 0.77445 0.92175 0.92195 0.92871 0.92832 0.96292 0.96311 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 9.51 37.16 0.35 -1.08 16 2 C 0.17 1.59 2.65 -67.93 -0.18 1.41 16 3 H 0.09 1.03 6.27 -51.93 -0.33 0.71 16 4 C 0.04 0.31 4.58 -3.82 -0.02 0.29 16 5 N -0.53 -4.30 4.42 -244.37 -1.08 -5.38 16 6 C 0.02 0.15 9.00 60.06 0.54 0.70 16 7 C 0.09 0.82 4.94 -4.97 -0.02 0.80 16 8 C -0.08 -0.78 4.88 -104.62 -0.51 -1.29 16 9 C -0.12 -1.02 8.11 -39.59 -0.32 -1.34 16 10 C -0.13 -1.09 10.05 -39.58 -0.40 -1.49 16 11 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 12 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 13 C -0.09 -1.05 9.70 -39.58 -0.38 -1.44 16 14 N -0.73 -8.03 4.79 -58.68 -0.28 -8.31 16 15 C 0.70 10.82 8.56 -86.92 -0.74 10.08 16 16 O -0.60 -11.73 15.95 5.29 0.08 -11.64 16 17 N -0.74 -11.13 5.56 -65.22 -0.36 -11.50 16 18 C 0.14 2.51 5.67 -4.04 -0.02 2.49 16 19 C -0.12 -2.40 5.27 -26.73 -0.14 -2.54 16 20 C 0.02 0.64 4.97 -27.88 -0.14 0.50 16 21 C -0.52 -14.74 9.11 -34.44 -0.31 -15.06 16 22 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 23 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 24 N -0.89 -27.08 13.29 55.43 0.74 -26.35 16 25 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 27 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 28 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.31 7.99 -51.93 -0.42 -0.11 16 33 H 0.08 0.47 7.73 -51.93 -0.40 0.07 16 34 H 0.07 0.57 6.53 -51.93 -0.34 0.23 16 35 H 0.07 0.39 7.84 -51.93 -0.41 -0.01 16 36 H 0.02 0.14 8.07 -51.93 -0.42 -0.28 16 37 H 0.09 0.86 6.67 -51.93 -0.35 0.52 16 38 H 0.04 0.32 8.01 -51.93 -0.42 -0.10 16 39 H 0.11 0.80 8.03 -52.49 -0.42 0.38 16 40 H 0.12 0.78 8.06 -52.48 -0.42 0.35 16 41 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 42 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 43 H 0.12 1.57 8.06 -52.48 -0.42 1.15 16 44 H 0.39 3.56 8.65 -40.82 -0.35 3.21 16 45 H 0.39 4.85 8.49 -40.82 -0.35 4.51 16 46 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 47 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 48 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 49 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 50 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 51 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 52 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 423.27 15.07 6.38 6.38 Total: -1.00 -33.32 423.27 -11.97 -45.29 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -9.23 Total: 4.51 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: -3.19 Total: -9.65 kcal Atomic # 7 Polarization: -50.54 SS G_CDS: -0.99 Total: -51.53 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.08 Total: -11.64 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 6.38 Total: 6.38 kcal Total: -33.32 -11.97 -45.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181316797.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.715 kcal (2) G-P(sol) polarization free energy of solvation -33.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds