Wall clock time and date at job start Tue Mar 31 2020 17:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47200 * 2 1 4 4 C 1.53003 * 109.46989 * 240.00458 * 2 1 3 5 5 N 1.46901 * 109.47130 * 184.15659 * 4 2 1 6 6 C 1.46892 * 111.00036 * 159.85495 * 5 4 2 7 7 C 1.46899 * 110.99531 * 283.80798 * 5 4 2 8 8 C 1.50711 * 109.46787 * 170.00041 * 7 5 4 9 9 C 1.38224 * 119.99946 * 89.99916 * 8 7 5 10 10 C 1.38239 * 119.99965 * 179.97438 * 9 8 7 11 11 C 1.38237 * 120.00031 * 0.07083 * 10 9 8 12 12 C 1.38238 * 119.99633 * 359.90422 * 11 10 9 13 13 C 1.38233 * 119.99594 * 269.97655 * 8 7 5 14 14 N 1.46496 * 109.47235 * 120.00268 * 2 1 3 15 15 C 1.34773 * 119.99934 * 271.63965 * 14 2 1 16 16 O 1.21589 * 120.00032 * 359.97438 * 15 14 2 17 17 N 1.34777 * 119.99802 * 180.02562 * 15 14 2 18 18 C 1.46502 * 119.99936 * 179.97438 * 17 15 14 19 19 C 1.52999 * 109.47101 * 179.97438 * 18 17 15 20 20 C 1.53003 * 109.47036 * 179.97438 * 19 18 17 21 21 C 1.50702 * 109.46993 * 180.02562 * 20 19 18 22 22 H 1.07992 * 120.00101 * 359.97438 * 21 20 19 23 23 C 1.37883 * 119.99791 * 179.97438 * 21 20 19 24 24 N 1.31509 * 119.99899 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 119.99814 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46754 * 60.00280 * 25 23 21 27 27 H 1.48501 * 109.47082 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.47348 * 300.00228 * 25 23 21 29 29 H 1.09002 * 109.47099 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47182 * 299.99678 * 1 2 3 31 31 H 1.09004 * 109.47131 * 59.99863 * 1 2 3 32 32 H 1.08998 * 109.47322 * 64.15589 * 4 2 1 33 33 H 1.08999 * 109.47111 * 304.15671 * 4 2 1 34 34 H 1.09001 * 109.47130 * 189.47192 * 6 5 4 35 35 H 1.09001 * 109.47343 * 309.46917 * 6 5 4 36 36 H 1.09000 * 109.47462 * 69.47504 * 6 5 4 37 37 H 1.08997 * 109.47620 * 50.00537 * 7 5 4 38 38 H 1.08999 * 109.47536 * 289.99619 * 7 5 4 39 39 H 1.07999 * 120.00336 * 359.69875 * 9 8 7 40 40 H 1.08003 * 119.99916 * 179.97438 * 10 9 8 41 41 H 1.07995 * 119.99867 * 179.97438 * 11 10 9 42 42 H 1.08001 * 119.99796 * 180.02562 * 12 11 10 43 43 H 1.08003 * 120.00508 * 0.02562 * 13 8 7 44 44 H 0.97002 * 120.00155 * 91.63289 * 14 2 1 45 45 H 0.97002 * 120.00287 * 359.97438 * 17 15 14 46 46 H 1.09001 * 109.47022 * 299.99734 * 18 17 15 47 47 H 1.09002 * 109.47325 * 59.99182 * 18 17 15 48 48 H 1.09001 * 109.47246 * 299.99941 * 19 18 17 49 49 H 1.09001 * 109.46850 * 60.00088 * 19 18 17 50 50 H 1.09001 * 109.47114 * 300.00094 * 20 19 18 51 51 H 1.08995 * 109.47418 * 59.99976 * 20 19 18 52 52 H 0.96999 * 120.00342 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5056 -0.8087 -1.2002 6 6 3.9995 -1.8703 -2.0873 7 6 4.1214 0.4831 -1.5315 8 6 5.5980 0.4264 -1.2351 9 6 6.4839 0.0152 -2.2131 10 6 7.8384 -0.0364 -1.9414 11 6 8.3067 0.3219 -0.6911 12 6 7.4206 0.7337 0.2868 13 6 6.0663 0.7861 0.0148 14 7 2.0184 -0.6906 1.1961 15 6 2.2115 -0.0035 2.3393 16 8 1.9809 1.1897 2.3778 17 7 2.6613 -0.6388 3.4396 18 6 2.8718 0.1081 4.6821 19 6 3.3806 -0.8417 5.7683 20 6 3.6011 -0.0614 7.0658 21 6 4.1029 -0.9969 8.1354 22 1 4.2495 -2.0433 7.9122 23 6 4.3749 -0.5168 9.3990 24 7 4.1968 0.7576 9.6706 25 14 4.9962 -1.6765 10.7250 26 1 6.2785 -2.2854 10.2889 27 1 5.2103 -0.9192 11.9843 28 1 3.9933 -2.7470 10.9561 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.7388 -0.1661 -2.1377 33 1 1.6171 -1.7251 -1.2874 34 1 5.0632 -2.0276 -1.9084 35 1 3.4568 -2.7939 -1.8859 36 1 3.8452 -1.5772 -3.1257 37 1 3.6608 1.2693 -0.9333 38 1 3.9713 0.6966 -2.5898 39 1 6.1176 -0.2701 -3.1882 40 1 8.5306 -0.3581 -2.7055 41 1 9.3647 0.2813 -0.4787 42 1 7.7865 1.0140 1.2636 43 1 5.3741 1.1073 0.7790 44 1 2.2026 -1.6425 1.1653 45 1 2.8456 -1.5907 3.4088 46 1 3.6073 0.8947 4.5131 47 1 1.9300 0.5542 5.0020 48 1 2.6449 -1.6280 5.9372 49 1 4.3224 -1.2879 5.4486 50 1 4.3371 0.7246 6.8965 51 1 2.6597 0.3851 7.3856 52 1 4.3885 1.0955 10.5594 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181316797.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:58 Heat of formation + Delta-G solvation = -39.216842 kcal Electronic energy + Delta-G solvation = -28482.382373 eV Core-core repulsion = 24673.205737 eV Total energy + Delta-G solvation = -3809.176636 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.08845 -40.35634 -38.60474 -37.00525 -35.88037 -35.14467 -33.26786 -32.51996 -31.80286 -31.37932 -28.36082 -28.20715 -27.44894 -25.06166 -23.82078 -23.38032 -22.42968 -22.26594 -21.83820 -21.22314 -19.23566 -18.50728 -17.73666 -17.38465 -16.81331 -16.59688 -16.52224 -16.38688 -16.14003 -15.68811 -15.52153 -15.26670 -15.12449 -14.93494 -14.29557 -14.26161 -14.03030 -13.76473 -13.72043 -13.58757 -13.42184 -13.30857 -12.96533 -12.88705 -12.71912 -12.67239 -12.53805 -12.49371 -12.38127 -11.88511 -11.81296 -11.65571 -11.63385 -11.56841 -11.26740 -11.08797 -10.54057 -10.26059 -9.81362 -9.70918 -9.63972 -9.20555 -8.18426 -6.30175 0.42275 0.50459 1.41758 1.45257 1.53024 1.83741 2.29246 2.42859 2.73499 3.15022 3.16422 3.46340 3.76484 3.91092 3.93645 4.15140 4.18590 4.21749 4.25063 4.26320 4.32180 4.36573 4.50187 4.57885 4.61998 4.63533 4.66413 4.72112 4.80304 4.82575 4.83879 4.97473 4.99198 5.09513 5.12152 5.13821 5.15708 5.18152 5.31632 5.49778 5.56264 5.59999 5.63701 5.69331 5.72078 5.72640 5.85022 6.05421 6.13762 6.13935 6.16374 6.24108 6.86862 7.24995 7.39258 7.72790 8.93673 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.010294 B = 0.002479 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2719.353182 B =11294.205093 C =13244.339890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.163 3.837 3 H 0.057 0.943 4 C 0.054 3.946 5 N -0.544 5.544 6 C 0.026 3.974 7 C 0.098 3.902 8 C -0.082 4.082 9 C -0.114 4.114 10 C -0.124 4.124 11 C -0.127 4.127 12 C -0.137 4.137 13 C -0.116 4.116 14 N -0.709 5.709 15 C 0.700 3.300 16 O -0.646 6.646 17 N -0.733 5.733 18 C 0.153 3.847 19 C -0.099 4.099 20 C 0.025 3.975 21 C -0.542 4.542 22 H 0.066 0.934 23 C -0.003 4.003 24 N -0.936 5.936 25 Si 0.968 3.032 26 H -0.265 1.265 27 H -0.286 1.286 28 H -0.265 1.265 29 H 0.074 0.926 30 H 0.033 0.967 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.103 0.897 34 H 0.061 0.939 35 H 0.079 0.921 36 H 0.037 0.963 37 H 0.064 0.936 38 H 0.058 0.942 39 H 0.139 0.861 40 H 0.146 0.854 41 H 0.137 0.863 42 H 0.119 0.881 43 H 0.096 0.904 44 H 0.408 0.592 45 H 0.409 0.591 46 H 0.041 0.959 47 H 0.044 0.956 48 H 0.067 0.933 49 H 0.065 0.935 50 H -0.009 1.009 51 H -0.008 1.008 52 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.239 -7.679 -32.266 33.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.057 3.943 3 H 0.075 0.925 4 C -0.074 4.074 5 N -0.268 5.268 6 C -0.122 4.122 7 C -0.029 4.029 8 C -0.083 4.083 9 C -0.132 4.132 10 C -0.142 4.142 11 C -0.146 4.146 12 C -0.155 4.155 13 C -0.135 4.135 14 N -0.364 5.364 15 C 0.399 3.601 16 O -0.528 6.528 17 N -0.389 5.389 18 C 0.028 3.972 19 C -0.137 4.137 20 C -0.013 4.013 21 C -0.580 4.580 22 H 0.085 0.915 23 C -0.201 4.201 24 N -0.576 5.576 25 Si 0.792 3.208 26 H -0.190 1.190 27 H -0.211 1.211 28 H -0.190 1.190 29 H 0.093 0.907 30 H 0.052 0.948 31 H 0.101 0.899 32 H 0.085 0.915 33 H 0.121 0.879 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.056 0.944 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.157 0.843 40 H 0.164 0.836 41 H 0.155 0.845 42 H 0.137 0.863 43 H 0.115 0.885 44 H 0.244 0.756 45 H 0.245 0.755 46 H 0.059 0.941 47 H 0.062 0.938 48 H 0.086 0.914 49 H 0.084 0.916 50 H 0.009 0.991 51 H 0.010 0.990 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.161 -6.608 -31.644 32.327 hybrid contribution 0.262 -0.310 0.665 0.779 sum 0.423 -6.918 -30.979 31.745 Atomic orbital electron populations 1.22124 0.94432 1.03021 1.02043 1.20845 0.93713 0.96231 0.83467 0.92461 1.22464 0.87028 1.02401 0.95532 1.61830 1.05910 1.04998 1.54075 1.22463 1.01313 0.94336 0.94085 1.21021 0.90461 0.91972 0.99488 1.19819 0.95537 0.99272 0.93657 1.21248 0.93225 0.99458 0.99279 1.21446 0.95955 0.99613 0.97156 1.21419 1.00374 0.99074 0.93689 1.21350 0.93618 1.00426 1.00074 1.21031 0.95592 1.00194 0.96661 1.44750 1.70770 1.12370 1.08540 1.16157 0.77930 0.84779 0.81204 1.90868 1.60979 1.15756 1.85206 1.45010 1.71135 1.12868 1.09853 1.20990 0.99243 0.94302 0.82626 1.21573 1.00750 0.97774 0.93593 1.18925 0.94958 0.95038 0.92336 1.21654 1.44095 0.95912 0.96325 0.91537 1.26036 0.95827 0.96785 1.01459 1.70109 1.50022 1.15298 1.22155 0.85462 0.79236 0.78578 0.77536 1.18998 1.21121 1.18966 0.90687 0.94818 0.89950 0.91459 0.87895 0.92013 0.90181 0.94446 0.91798 0.92377 0.84310 0.83643 0.84492 0.86289 0.88529 0.75559 0.75505 0.94052 0.93793 0.91390 0.91624 0.99108 0.99007 0.92798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.55 9.51 71.98 0.68 -1.86 16 2 C 0.16 3.00 2.65 44.99 0.12 3.12 16 3 H 0.06 1.43 6.27 -2.39 -0.01 1.42 16 4 C 0.05 0.61 4.58 86.30 0.39 1.01 16 5 N -0.54 -7.81 4.42 -927.05 -4.10 -11.91 16 6 C 0.03 0.27 9.00 127.69 1.15 1.42 16 7 C 0.10 1.66 4.94 85.56 0.42 2.08 16 8 C -0.08 -1.62 4.88 -19.87 -0.10 -1.72 16 9 C -0.11 -1.77 8.11 22.27 0.18 -1.59 16 10 C -0.12 -1.89 10.05 22.27 0.22 -1.67 16 11 C -0.13 -2.32 10.05 22.27 0.22 -2.09 16 12 C -0.14 -3.11 10.05 22.27 0.22 -2.88 16 13 C -0.12 -2.85 9.70 22.27 0.22 -2.64 16 14 N -0.71 -15.20 4.79 -457.82 -2.19 -17.40 16 15 C 0.70 22.10 8.56 179.06 1.53 23.63 16 16 O -0.65 -26.69 15.95 -4.00 -0.06 -26.75 16 17 N -0.73 -22.12 5.56 -478.53 -2.66 -24.78 16 18 C 0.15 5.83 5.67 86.38 0.49 6.32 16 19 C -0.10 -3.99 5.27 30.60 0.16 -3.83 16 20 C 0.03 1.35 4.97 29.85 0.15 1.50 16 21 C -0.54 -30.85 9.11 25.60 0.23 -30.62 16 22 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 23 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 24 N -0.94 -58.12 13.29 21.45 0.28 -57.83 16 25 Si 0.97 44.36 29.54 68.60 2.03 46.39 16 26 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 27 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 28 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 29 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 32 H 0.07 0.60 7.99 -2.39 -0.02 0.58 16 33 H 0.10 0.76 7.73 -2.39 -0.02 0.74 16 34 H 0.06 0.80 6.53 -2.39 -0.02 0.79 16 35 H 0.08 0.64 7.84 -2.39 -0.02 0.62 16 36 H 0.04 0.30 8.07 -2.39 -0.02 0.28 16 37 H 0.06 1.36 6.67 -2.39 -0.02 1.34 16 38 H 0.06 0.77 8.01 -2.39 -0.02 0.75 16 39 H 0.14 1.47 8.03 -2.91 -0.02 1.45 16 40 H 0.15 1.41 8.06 -2.91 -0.02 1.38 16 41 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 42 H 0.12 2.64 8.06 -2.91 -0.02 2.62 16 43 H 0.10 2.80 8.06 -2.91 -0.02 2.78 16 44 H 0.41 6.59 8.65 -92.71 -0.80 5.78 16 45 H 0.41 9.61 8.49 -92.71 -0.79 8.82 16 46 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 47 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 48 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 49 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 50 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 51 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 52 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -75.70 423.27 -0.63 -76.33 By element: Atomic # 1 Polarization: 26.21 SS G_CDS: -0.69 Total: 25.51 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: 6.77 Total: -9.55 kcal Atomic # 7 Polarization: -103.26 SS G_CDS: -8.67 Total: -111.93 kcal Atomic # 8 Polarization: -26.69 SS G_CDS: -0.06 Total: -26.75 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -75.70 -0.63 -76.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181316797.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.111 kcal (2) G-P(sol) polarization free energy of solvation -75.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds