Wall clock time and date at job start Tue Mar 31 2020 17:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47213 * 2 1 4 4 C 1.50700 * 109.47307 * 119.99841 * 2 1 3 5 5 H 1.08000 * 120.00351 * 119.99629 * 4 2 1 6 6 C 1.37883 * 119.99864 * 300.00407 * 4 2 1 7 7 N 1.31514 * 120.00045 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00003 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47095 * 179.97438 * 8 6 4 10 10 H 1.48497 * 109.47073 * 299.99707 * 8 6 4 11 11 H 1.48496 * 109.46999 * 59.99815 * 8 6 4 12 12 N 1.46896 * 109.47236 * 239.99687 * 2 1 3 13 13 C 1.46903 * 111.00038 * 306.04772 * 12 2 1 14 14 C 1.46903 * 110.99912 * 69.99962 * 12 2 1 15 15 C 1.50705 * 109.46937 * 169.99778 * 14 12 2 16 16 O 1.21271 * 120.00132 * 0.02562 * 15 14 12 17 17 N 1.34778 * 119.99324 * 179.97438 * 15 14 12 18 18 C 1.46509 * 119.99544 * 180.02562 * 17 15 14 19 19 C 1.52999 * 109.47034 * 180.02562 * 18 17 15 20 20 H 1.08996 * 109.46742 * 65.00227 * 19 18 17 21 21 C 1.50700 * 109.46723 * 185.00224 * 19 18 17 22 22 C 1.38232 * 119.99627 * 228.29778 * 21 19 18 23 23 C 1.38239 * 120.00018 * 179.81179 * 22 21 19 24 24 C 1.38230 * 119.99592 * 0.39912 * 23 22 21 25 25 C 1.38238 * 120.00280 * 359.85708 * 24 23 22 26 26 C 1.38230 * 119.99942 * 359.95317 * 25 24 23 27 27 N 1.46900 * 109.47100 * 305.00017 * 19 18 17 28 28 C 1.46898 * 110.99795 * 172.25884 * 27 19 18 29 29 C 1.46898 * 111.00406 * 296.21788 * 27 19 18 30 30 H 1.09005 * 109.46946 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47065 * 300.00308 * 1 2 3 32 32 H 1.08998 * 109.46817 * 60.00445 * 1 2 3 33 33 H 0.96999 * 120.00041 * 180.02562 * 7 6 4 34 34 H 1.08999 * 109.47228 * 60.00245 * 13 12 2 35 35 H 1.09001 * 109.46943 * 180.02562 * 13 12 2 36 36 H 1.08997 * 109.46881 * 299.99693 * 13 12 2 37 37 H 1.08994 * 109.47454 * 289.99974 * 14 12 2 38 38 H 1.09002 * 109.47055 * 49.99983 * 14 12 2 39 39 H 0.96993 * 120.00402 * 0.02562 * 17 15 14 40 40 H 1.08994 * 109.47084 * 300.00506 * 18 17 15 41 41 H 1.09002 * 109.46985 * 60.00246 * 18 17 15 42 42 H 1.07995 * 120.00369 * 0.02562 * 22 21 19 43 43 H 1.07994 * 120.00191 * 180.23340 * 23 22 21 44 44 H 1.08002 * 120.00269 * 179.83005 * 24 23 22 45 45 H 1.08002 * 120.00153 * 179.97438 * 25 24 23 46 46 H 1.08001 * 120.00277 * 179.97438 * 26 25 24 47 47 H 1.09006 * 109.46821 * 63.95940 * 28 27 19 48 48 H 1.09008 * 109.47263 * 183.95294 * 28 27 19 49 49 H 1.08999 * 109.47748 * 303.95424 * 28 27 19 50 50 H 1.09004 * 109.47111 * 51.70021 * 29 27 19 51 51 H 1.08993 * 109.47485 * 171.69978 * 29 27 19 52 52 H 1.09003 * 109.46680 * 291.70135 * 29 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 0.9435 0.8302 2.6034 8 14 2.3214 -1.1202 4.0080 9 1 1.8269 -0.4198 5.2205 10 1 1.8259 -2.5201 4.0079 11 1 3.8063 -1.1207 4.0082 12 7 2.0197 -0.6925 -1.1994 13 6 1.4343 -2.0355 -1.3077 14 6 1.7530 0.0971 -2.4090 15 6 2.4776 -0.5164 -3.5794 16 8 3.1495 -1.5135 -3.4214 17 7 2.3779 0.0425 -4.8017 18 6 3.0818 -0.5543 -5.9396 19 6 2.8041 0.2683 -7.1994 20 1 3.2327 1.2639 -7.0851 21 6 3.4261 -0.4128 -8.3912 22 6 4.1977 0.3146 -9.2780 23 6 4.7715 -0.3109 -10.3691 24 6 4.5670 -1.6619 -10.5778 25 6 3.7911 -2.3882 -9.6938 26 6 3.2205 -1.7636 -8.6006 27 7 1.3533 0.3800 -7.4013 28 6 1.0441 1.3128 -8.4932 29 6 0.7531 -0.9378 -7.6488 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 0.7094 1.1618 3.4844 34 1 0.3491 -1.9550 -1.3693 35 1 1.8141 -2.5261 -2.2039 36 1 1.7060 -2.6221 -0.4301 37 1 0.6815 0.1052 -2.6088 38 1 2.1025 1.1188 -2.2604 39 1 1.8401 0.8398 -4.9281 40 1 4.1533 -0.5623 -5.7403 41 1 2.7321 -1.5760 -6.0879 42 1 4.3550 1.3708 -9.1167 43 1 5.3774 0.2566 -11.0599 44 1 5.0130 -2.1501 -11.4317 45 1 3.6309 -3.4437 -9.8571 46 1 2.6139 -2.3309 -7.9102 47 1 1.4388 0.9193 -9.4300 48 1 -0.0365 1.4307 -8.5753 49 1 1.5002 2.2805 -8.2846 50 1 1.0610 -1.6302 -6.8653 51 1 -0.3331 -0.8482 -7.6483 52 1 1.0863 -1.3127 -8.6166 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184981014.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:24 Heat of formation + Delta-G solvation = 19.762106 kcal Electronic energy + Delta-G solvation = -29096.235174 eV Core-core repulsion = 25289.616056 eV Total energy + Delta-G solvation = -3806.619117 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.61463 -39.24163 -37.59445 -36.50840 -34.17581 -32.61332 -31.96305 -31.42365 -29.50443 -28.50632 -27.97634 -27.03390 -25.15883 -24.76718 -23.56864 -22.82699 -22.69256 -20.39880 -20.21179 -19.08367 -17.28936 -16.71898 -16.55613 -16.20438 -15.90095 -15.60261 -15.16646 -14.92624 -14.79396 -14.60292 -14.53842 -14.04517 -13.82385 -13.57932 -13.33373 -13.14914 -12.92275 -12.61824 -12.47452 -12.45939 -12.31014 -12.15873 -11.75638 -11.60865 -11.50120 -11.45581 -11.16669 -10.95168 -10.84902 -10.71941 -10.61105 -10.40063 -10.00248 -9.90945 -9.29951 -9.24168 -9.10790 -8.84422 -8.76897 -8.65979 -8.31883 -7.03809 -5.94947 -3.97322 0.93601 1.03498 3.14053 3.25659 3.38918 3.41908 3.45619 3.48845 3.69244 4.34143 4.41186 4.48996 4.63643 4.69115 4.74775 4.87664 4.92259 5.06835 5.11848 5.20434 5.23082 5.27635 5.34069 5.36582 5.38158 5.57080 5.58904 5.60711 5.65284 5.67311 5.81879 5.91848 5.97719 6.07543 6.14986 6.17733 6.42961 6.51470 6.55358 6.61895 6.65741 6.72072 6.78114 6.87881 7.06498 7.15705 7.48076 7.77038 7.82910 7.93982 8.19206 8.44552 8.63455 8.74124 9.09075 9.67153 11.12394 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.025052 B = 0.002146 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.424727 B =13046.388592 C =13489.814006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.211 3.789 3 H 0.038 0.962 4 C -0.494 4.494 5 H 0.063 0.937 6 C 0.056 3.944 7 N -0.897 5.897 8 Si 0.898 3.102 9 H -0.289 1.289 10 H -0.278 1.278 11 H -0.277 1.277 12 N -0.517 5.517 13 C 0.032 3.968 14 C 0.038 3.962 15 C 0.513 3.487 16 O -0.525 6.525 17 N -0.729 5.729 18 C 0.134 3.866 19 C 0.109 3.891 20 H 0.097 0.903 21 C -0.115 4.115 22 C -0.105 4.105 23 C -0.122 4.122 24 C -0.118 4.118 25 C -0.121 4.121 26 C -0.107 4.107 27 N -0.527 5.527 28 C 0.022 3.978 29 C 0.010 3.990 30 H 0.033 0.967 31 H 0.089 0.911 32 H 0.006 0.994 33 H 0.260 0.740 34 H 0.012 0.988 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.053 0.947 38 H 0.094 0.906 39 H 0.404 0.596 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.121 0.879 43 H 0.121 0.879 44 H 0.121 0.879 45 H 0.122 0.878 46 H 0.127 0.873 47 H 0.029 0.971 48 H 0.069 0.931 49 H 0.068 0.932 50 H 0.073 0.927 51 H 0.069 0.931 52 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.397 0.444 -28.957 28.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.105 3.895 3 H 0.056 0.944 4 C -0.533 4.533 5 H 0.081 0.919 6 C -0.144 4.144 7 N -0.537 5.537 8 Si 0.726 3.274 9 H -0.215 1.215 10 H -0.204 1.204 11 H -0.202 1.202 12 N -0.241 5.241 13 C -0.116 4.116 14 C -0.094 4.094 15 C 0.300 3.700 16 O -0.399 6.399 17 N -0.384 5.384 18 C 0.010 3.990 19 C 0.001 3.999 20 H 0.115 0.885 21 C -0.117 4.117 22 C -0.124 4.124 23 C -0.140 4.140 24 C -0.136 4.136 25 C -0.139 4.139 26 C -0.126 4.126 27 N -0.249 5.249 28 C -0.126 4.126 29 C -0.138 4.138 30 H 0.052 0.948 31 H 0.107 0.893 32 H 0.025 0.975 33 H 0.070 0.930 34 H 0.030 0.970 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.071 0.929 38 H 0.112 0.888 39 H 0.239 0.761 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.139 0.861 43 H 0.139 0.861 44 H 0.139 0.861 45 H 0.140 0.860 46 H 0.145 0.855 47 H 0.048 0.952 48 H 0.088 0.912 49 H 0.087 0.913 50 H 0.092 0.908 51 H 0.087 0.913 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 2.096 -0.027 -28.169 28.247 hybrid contribution -0.531 -0.221 -0.166 0.599 sum 1.565 -0.249 -28.335 28.379 Atomic orbital electron populations 1.22422 1.00831 0.99541 1.00430 1.19362 0.89742 0.94445 0.85975 0.94375 1.21073 1.30285 1.12446 0.89485 0.91903 1.24923 0.95323 0.95202 0.98963 1.69873 1.37276 1.23129 1.23415 0.86560 0.79257 0.79591 0.81991 1.21487 1.20386 1.20240 1.62087 1.59074 1.02308 1.00619 1.22343 0.95481 0.91586 1.02216 1.21901 0.97718 0.98937 0.90822 1.21024 0.81266 0.84208 0.83498 1.90637 1.39926 1.25142 1.84226 1.45886 1.52624 1.32390 1.07516 1.21265 0.97339 0.96470 0.83970 1.21031 0.87827 0.99531 0.91545 0.88471 1.20398 0.99038 0.94482 0.97784 1.21067 0.97017 0.99754 0.94548 1.21147 1.00018 0.95004 0.97877 1.21191 0.98618 0.94444 0.99368 1.21183 0.97731 0.99986 0.95036 1.21277 0.99192 0.94212 0.97882 1.62355 1.08997 1.10688 1.42834 1.22400 1.01828 0.96301 0.92059 1.22728 1.00040 0.90595 1.00411 0.94836 0.89274 0.97541 0.93042 0.96994 0.92170 0.91190 0.92947 0.88816 0.76063 0.91147 0.91685 0.86058 0.86056 0.86146 0.85963 0.85541 0.95248 0.91196 0.91284 0.90831 0.91270 0.94405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.18 8.22 37.16 0.31 -3.88 16 2 C 0.21 5.39 2.31 -68.86 -0.16 5.23 16 3 H 0.04 1.05 7.93 -51.93 -0.41 0.64 16 4 C -0.49 -13.91 7.97 -34.44 -0.27 -14.18 16 5 H 0.06 1.81 7.10 -52.49 -0.37 1.43 16 6 C 0.06 1.58 5.30 -17.82 -0.09 1.49 16 7 N -0.90 -25.70 11.32 55.43 0.63 -25.07 16 8 Si 0.90 21.87 29.54 -169.99 -5.02 16.84 16 9 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 12 N -0.52 -11.81 4.44 -237.73 -1.06 -12.86 16 13 C 0.03 0.70 8.46 60.07 0.51 1.21 16 14 C 0.04 0.70 5.02 -4.97 -0.02 0.67 16 15 C 0.51 8.79 7.52 -10.98 -0.08 8.70 16 16 O -0.52 -10.95 14.33 5.57 0.08 -10.87 16 17 N -0.73 -9.18 5.39 -60.29 -0.32 -9.50 16 18 C 0.13 1.50 4.57 -4.04 -0.02 1.48 16 19 C 0.11 0.92 2.24 -68.87 -0.15 0.77 16 20 H 0.10 0.76 7.84 -51.93 -0.41 0.36 16 21 C -0.11 -0.96 3.73 -104.63 -0.39 -1.35 16 22 C -0.11 -0.80 9.50 -39.58 -0.38 -1.18 16 23 C -0.12 -0.88 10.05 -39.58 -0.40 -1.27 16 24 C -0.12 -0.85 10.05 -39.58 -0.40 -1.25 16 25 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 26 C -0.11 -0.91 6.80 -39.59 -0.27 -1.18 16 27 N -0.53 -4.31 4.43 -244.59 -1.08 -5.39 16 28 C 0.02 0.15 9.33 60.06 0.56 0.71 16 29 C 0.01 0.08 7.89 60.06 0.47 0.56 16 30 H 0.03 0.79 6.33 -51.93 -0.33 0.47 16 31 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 32 H 0.01 0.12 6.91 -51.93 -0.36 -0.24 16 33 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 34 H 0.01 0.25 6.21 -51.93 -0.32 -0.08 16 35 H 0.06 1.27 5.82 -51.93 -0.30 0.97 16 36 H 0.07 1.62 6.86 -51.93 -0.36 1.26 16 37 H 0.05 0.90 7.06 -51.93 -0.37 0.54 16 38 H 0.09 1.62 7.93 -51.93 -0.41 1.21 16 39 H 0.40 4.33 8.14 -40.82 -0.33 4.00 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.07 0.77 5.23 -51.93 -0.27 0.50 16 42 H 0.12 0.75 7.98 -52.49 -0.42 0.33 16 43 H 0.12 0.64 8.06 -52.49 -0.42 0.21 16 44 H 0.12 0.64 8.06 -52.49 -0.42 0.21 16 45 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 46 H 0.13 1.06 5.12 -52.49 -0.27 0.79 16 47 H 0.03 0.21 7.32 -51.93 -0.38 -0.17 16 48 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 49 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 50 H 0.07 0.68 5.59 -51.93 -0.29 0.39 16 51 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 52 H 0.04 0.30 5.75 -51.93 -0.30 0.00 16 LS Contribution 395.93 15.07 5.97 5.97 Total: -1.00 -31.99 395.93 -10.31 -42.29 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -8.31 Total: 3.42 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: -1.19 Total: -4.81 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: -1.84 Total: -52.83 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.08 Total: -10.87 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.99 -10.31 -42.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184981014.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.054 kcal (2) G-P(sol) polarization free energy of solvation -31.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds