Wall clock time and date at job start Tue Mar 31 2020 17:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 109.47038 * 2 1 4 4 C 1.50700 * 109.47358 * 239.99335 * 2 1 3 5 5 H 1.08001 * 119.99806 * 246.06885 * 4 2 1 6 6 C 1.37875 * 119.99614 * 66.07065 * 4 2 1 7 7 N 1.31520 * 119.99770 * 187.17131 * 6 4 2 8 8 Si 1.86799 * 120.00492 * 7.45001 * 6 4 2 9 9 H 1.48499 * 109.46652 * 269.72704 * 8 6 4 10 10 H 1.48497 * 109.46779 * 29.72026 * 8 6 4 11 11 H 1.48492 * 109.47546 * 149.72299 * 8 6 4 12 12 N 1.46901 * 109.46998 * 119.99359 * 2 1 3 13 13 C 1.46893 * 111.00189 * 58.95663 * 12 2 1 14 14 C 1.46901 * 111.00164 * 294.99967 * 12 2 1 15 15 C 1.50695 * 109.47541 * 189.99863 * 14 12 2 16 16 O 1.21283 * 119.99658 * 0.02562 * 15 14 12 17 17 N 1.34778 * 120.00330 * 180.02562 * 15 14 12 18 18 C 1.46497 * 119.99936 * 180.02562 * 17 15 14 19 19 C 1.53003 * 109.47031 * 179.97438 * 18 17 15 20 20 H 1.09002 * 109.46681 * 65.00252 * 19 18 17 21 21 C 1.50702 * 109.47191 * 184.99917 * 19 18 17 22 22 C 1.38234 * 119.99574 * 230.53810 * 21 19 18 23 23 C 1.38241 * 119.99406 * 179.80987 * 22 21 19 24 24 C 1.38236 * 120.00193 * 0.39911 * 23 22 21 25 25 C 1.38242 * 119.99756 * 359.85418 * 24 23 22 26 26 C 1.38230 * 119.99876 * 359.95393 * 25 24 23 27 27 N 1.46900 * 109.47392 * 304.99937 * 19 18 17 28 28 C 1.46896 * 111.00085 * 170.97803 * 27 19 18 29 29 C 1.46895 * 110.99964 * 294.93631 * 27 19 18 30 30 H 1.08999 * 109.46932 * 53.95606 * 1 2 3 31 31 H 1.09006 * 109.46569 * 173.95234 * 1 2 3 32 32 H 1.08997 * 109.47081 * 293.95308 * 1 2 3 33 33 H 0.97001 * 119.99462 * 355.19217 * 7 6 4 34 34 H 1.08997 * 109.47309 * 59.99679 * 13 12 2 35 35 H 1.09000 * 109.47406 * 179.97438 * 13 12 2 36 36 H 1.09001 * 109.47291 * 299.99822 * 13 12 2 37 37 H 1.08998 * 109.47268 * 310.00548 * 14 12 2 38 38 H 1.08997 * 109.47032 * 70.00057 * 14 12 2 39 39 H 0.97001 * 119.99712 * 0.02562 * 17 15 14 40 40 H 1.08998 * 109.47363 * 300.00016 * 18 17 15 41 41 H 1.09004 * 109.47175 * 60.00107 * 18 17 15 42 42 H 1.07999 * 120.00745 * 359.97438 * 22 21 19 43 43 H 1.08006 * 119.99675 * 180.22666 * 23 22 21 44 44 H 1.07996 * 119.99896 * 179.83440 * 24 23 22 45 45 H 1.08000 * 119.99364 * 179.97438 * 25 24 23 46 46 H 1.07998 * 119.99643 * 180.02562 * 26 25 24 47 47 H 1.09002 * 109.47241 * 63.95841 * 28 27 19 48 48 H 1.09002 * 109.47312 * 183.95849 * 28 27 19 49 49 H 1.08995 * 109.47289 * 303.95593 * 28 27 19 50 50 H 1.08995 * 109.47504 * 52.05238 * 29 27 19 51 51 H 1.09005 * 109.47105 * 172.05214 * 29 27 19 52 52 H 1.08997 * 109.47450 * 292.05078 * 29 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5701 -1.6422 -1.1341 6 6 1.8056 -0.1711 -2.4788 7 7 2.1172 -0.8560 -3.5575 8 14 1.0629 1.5354 -2.6381 9 1 -0.4171 1.4277 -2.6955 10 1 1.4543 2.3570 -1.4647 11 1 1.5610 2.1781 -3.8806 12 7 2.0197 -0.6924 1.1995 13 6 1.5284 -2.0759 1.2462 14 6 1.6487 0.0394 2.4181 15 6 2.3678 -0.5567 3.6007 16 8 3.1161 -1.4982 3.4437 17 7 2.1794 -0.0437 4.8327 18 6 2.8790 -0.6229 5.9821 19 6 2.4925 0.1392 7.2513 20 1 1.4318 -0.0084 7.4549 21 6 3.3032 -0.3754 8.4128 22 6 2.6724 -0.7458 9.5857 23 6 3.4158 -1.2215 10.6497 24 6 4.7906 -1.3190 10.5437 25 6 5.4219 -0.9435 9.3725 26 6 4.6782 -0.4716 8.3072 27 7 2.7605 1.5713 7.0634 28 6 2.2073 2.3603 8.1721 29 6 4.1994 1.8213 6.9058 30 1 -0.3633 0.6047 -0.8309 31 1 -0.3633 -1.0220 -0.1083 32 1 -0.3633 0.4172 0.9391 33 1 2.5701 -1.7099 -3.4758 34 1 1.8763 -2.6150 0.3650 35 1 1.9061 -2.5656 2.1438 36 1 0.4385 -2.0741 1.2642 37 1 1.9297 1.0872 2.3124 38 1 0.5723 -0.0343 2.5726 39 1 1.5807 0.7091 4.9582 40 1 2.5987 -1.6709 6.0877 41 1 3.9554 -0.5484 5.8276 42 1 1.5987 -0.6662 9.6699 43 1 2.9226 -1.5145 11.5648 44 1 5.3716 -1.6881 11.3759 45 1 6.4960 -1.0193 9.2899 46 1 5.1713 -0.1787 7.3921 47 1 2.7127 2.0889 9.0989 48 1 2.3578 3.4215 7.9735 49 1 1.1408 2.1562 8.2666 50 1 4.5976 1.1728 6.1255 51 1 4.3589 2.8634 6.6286 52 1 4.7095 1.6134 7.8463 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184981030.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:29 Heat of formation + Delta-G solvation = 21.231664 kcal Electronic energy + Delta-G solvation = -29158.194226 eV Core-core repulsion = 25351.638834 eV Total energy + Delta-G solvation = -3806.555392 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -40.66666 -39.35328 -37.65370 -36.72991 -34.25958 -32.59338 -32.00507 -31.46300 -29.93812 -28.92402 -28.02194 -27.23434 -24.96551 -24.75117 -23.50319 -22.83055 -22.71297 -20.46531 -20.21211 -19.04657 -17.40081 -17.20339 -16.66555 -16.58646 -16.27483 -15.67299 -15.24622 -14.96762 -14.82838 -14.70401 -14.58073 -14.02553 -13.74670 -13.69268 -13.42342 -13.24430 -12.96820 -12.85497 -12.58123 -12.46378 -12.32849 -12.18964 -11.85054 -11.73190 -11.63664 -11.48690 -11.38097 -11.33801 -11.20370 -10.82021 -10.80609 -10.33813 -9.91997 -9.68681 -9.34595 -9.29957 -9.14162 -8.88797 -8.71204 -8.66795 -8.29165 -7.24240 -6.35944 -3.97560 0.90350 1.00487 3.03632 3.19757 3.38964 3.42434 3.46306 3.60989 3.63682 4.29726 4.37891 4.53090 4.60597 4.65025 4.72008 4.83407 4.87519 4.98310 5.03450 5.08983 5.17672 5.23680 5.26776 5.31756 5.38381 5.52947 5.54827 5.56091 5.60841 5.64032 5.73146 5.77339 5.79970 6.04522 6.12010 6.14306 6.21198 6.33418 6.37014 6.40871 6.50290 6.58836 6.61798 6.63466 6.67519 6.85032 7.02551 7.29351 7.66211 7.83248 8.10851 8.34249 8.52578 8.63214 9.05449 9.71210 11.05284 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.023503 B = 0.002255 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.045318 B =12413.181672 C =12848.206850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.179 3.821 3 H 0.039 0.961 4 C -0.575 4.575 5 H 0.065 0.935 6 C 0.024 3.976 7 N -0.916 5.916 8 Si 1.056 2.944 9 H -0.286 1.286 10 H -0.280 1.280 11 H -0.290 1.290 12 N -0.507 5.507 13 C 0.033 3.967 14 C 0.033 3.967 15 C 0.513 3.487 16 O -0.523 6.523 17 N -0.728 5.728 18 C 0.135 3.865 19 C 0.110 3.890 20 H 0.096 0.904 21 C -0.116 4.116 22 C -0.105 4.105 23 C -0.123 4.123 24 C -0.117 4.117 25 C -0.121 4.121 26 C -0.108 4.108 27 N -0.527 5.527 28 C 0.022 3.978 29 C 0.009 3.991 30 H 0.048 0.952 31 H 0.053 0.947 32 H 0.025 0.975 33 H 0.267 0.733 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.010 0.990 37 H 0.095 0.905 38 H 0.054 0.946 39 H 0.404 0.596 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.121 0.879 43 H 0.121 0.879 44 H 0.121 0.879 45 H 0.123 0.877 46 H 0.128 0.872 47 H 0.029 0.971 48 H 0.070 0.930 49 H 0.068 0.932 50 H 0.074 0.926 51 H 0.069 0.931 52 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.256 5.197 31.679 32.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.072 3.928 3 H 0.057 0.943 4 C -0.613 4.613 5 H 0.083 0.917 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.886 3.114 9 H -0.213 1.213 10 H -0.206 1.206 11 H -0.216 1.216 12 N -0.230 5.230 13 C -0.115 4.115 14 C -0.099 4.099 15 C 0.300 3.700 16 O -0.397 6.397 17 N -0.383 5.383 18 C 0.010 3.990 19 C 0.001 3.999 20 H 0.114 0.886 21 C -0.118 4.118 22 C -0.124 4.124 23 C -0.141 4.141 24 C -0.136 4.136 25 C -0.139 4.139 26 C -0.126 4.126 27 N -0.249 5.249 28 C -0.126 4.126 29 C -0.139 4.139 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.044 0.956 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.029 0.971 37 H 0.113 0.887 38 H 0.071 0.929 39 H 0.239 0.761 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.139 0.861 43 H 0.139 0.861 44 H 0.139 0.861 45 H 0.141 0.859 46 H 0.146 0.854 47 H 0.048 0.952 48 H 0.089 0.911 49 H 0.087 0.913 50 H 0.093 0.907 51 H 0.088 0.912 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 0.546 5.763 29.948 30.502 hybrid contribution -0.240 -0.980 2.097 2.327 sum 0.306 4.784 32.045 32.401 Atomic orbital electron populations 1.22786 1.01666 1.01257 0.98604 1.19905 0.88890 0.95335 0.88700 0.94309 1.22045 1.39220 1.09817 0.90238 0.91651 1.25702 0.96457 1.03844 0.91975 1.70806 1.38798 1.15372 1.30166 0.83841 0.76125 0.75859 0.75601 1.21320 1.20601 1.21628 1.61983 1.59224 1.02031 0.99777 1.22359 0.95997 0.90479 1.02714 1.21978 0.97417 0.99615 0.90843 1.20928 0.82086 0.83357 0.83667 1.90658 1.36644 1.27585 1.84824 1.45861 1.49067 1.36955 1.06429 1.21265 0.97488 0.96558 0.83697 1.21021 0.99406 0.87815 0.91654 0.88582 1.20387 0.94592 1.00611 0.96220 1.21062 0.99770 0.98712 0.92872 1.21150 0.94215 0.99959 0.98755 1.21200 0.94814 0.99677 0.97879 1.21193 1.00100 0.99106 0.93536 1.21325 0.93572 0.98433 0.99287 1.62352 1.15240 1.05011 1.42307 1.22397 1.00015 0.98332 0.91838 1.22786 0.87679 1.02554 1.00891 0.93362 0.92773 0.95590 0.92295 0.90813 0.91898 0.97110 0.88661 0.92858 0.76083 0.91229 0.91534 0.86095 0.86054 0.86118 0.85914 0.85380 0.95248 0.91145 0.91334 0.90747 0.91202 0.94242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.98 8.05 37.16 0.30 -3.68 16 2 C 0.18 4.34 1.92 -68.86 -0.13 4.20 16 3 H 0.04 0.96 6.42 -51.93 -0.33 0.62 16 4 C -0.57 -16.45 8.40 -34.44 -0.29 -16.74 16 5 H 0.07 2.05 6.76 -52.49 -0.35 1.70 16 6 C 0.02 0.70 5.42 -17.82 -0.10 0.60 16 7 N -0.92 -28.66 13.70 55.43 0.76 -27.90 16 8 Si 1.06 25.65 25.45 -169.99 -4.33 21.33 16 9 H -0.29 -6.60 6.81 56.52 0.38 -6.21 16 10 H -0.28 -6.28 6.34 56.52 0.36 -5.93 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 N -0.51 -11.28 4.48 -237.73 -1.06 -12.34 16 13 C 0.03 0.71 8.54 60.06 0.51 1.22 16 14 C 0.03 0.57 4.90 -4.98 -0.02 0.55 16 15 C 0.51 8.48 7.52 -10.99 -0.08 8.39 16 16 O -0.52 -10.75 14.33 5.55 0.08 -10.67 16 17 N -0.73 -8.73 5.39 -60.29 -0.32 -9.05 16 18 C 0.13 1.45 4.63 -4.04 -0.02 1.43 16 19 C 0.11 0.88 2.24 -68.86 -0.15 0.73 16 20 H 0.10 0.70 7.80 -51.93 -0.40 0.30 16 21 C -0.12 -0.94 3.77 -104.62 -0.39 -1.33 16 22 C -0.11 -0.77 9.62 -39.58 -0.38 -1.16 16 23 C -0.12 -0.85 10.05 -39.58 -0.40 -1.25 16 24 C -0.12 -0.83 10.05 -39.58 -0.40 -1.23 16 25 C -0.12 -0.93 10.05 -39.58 -0.40 -1.33 16 26 C -0.11 -0.90 6.74 -39.59 -0.27 -1.17 16 27 N -0.53 -4.14 4.42 -244.59 -1.08 -5.22 16 28 C 0.02 0.15 9.34 60.06 0.56 0.71 16 29 C 0.01 0.07 7.84 60.06 0.47 0.54 16 30 H 0.05 1.06 4.68 -51.93 -0.24 0.81 16 31 H 0.05 1.20 6.73 -51.93 -0.35 0.85 16 32 H 0.03 0.47 6.47 -51.93 -0.34 0.13 16 33 H 0.27 8.37 8.72 -40.82 -0.36 8.01 16 34 H 0.07 1.77 6.42 -51.93 -0.33 1.43 16 35 H 0.06 1.33 5.83 -51.93 -0.30 1.02 16 36 H 0.01 0.21 6.42 -51.93 -0.33 -0.12 16 37 H 0.10 1.52 8.00 -51.93 -0.42 1.10 16 38 H 0.05 0.84 6.80 -51.93 -0.35 0.48 16 39 H 0.40 4.02 8.14 -40.82 -0.33 3.69 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.07 0.79 5.36 -51.93 -0.28 0.51 16 42 H 0.12 0.70 7.97 -52.49 -0.42 0.29 16 43 H 0.12 0.61 8.06 -52.48 -0.42 0.19 16 44 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 45 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 46 H 0.13 1.06 5.00 -52.49 -0.26 0.80 16 47 H 0.03 0.20 7.47 -51.93 -0.39 -0.18 16 48 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.07 0.39 8.06 -51.93 -0.42 -0.03 16 50 H 0.07 0.68 5.56 -51.93 -0.29 0.39 16 51 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 52 H 0.04 0.31 5.62 -51.93 -0.29 0.01 16 LS Contribution 389.91 15.07 5.88 5.88 Total: -1.00 -33.78 389.91 -9.46 -43.23 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -8.19 Total: 4.25 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -1.19 Total: -9.50 kcal Atomic # 7 Polarization: -52.81 SS G_CDS: -1.71 Total: -54.52 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.08 Total: -10.67 kcal Atomic # 14 Polarization: 25.65 SS G_CDS: -4.33 Total: 21.33 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.78 -9.46 -43.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184981030.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.466 kcal (2) G-P(sol) polarization free energy of solvation -33.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds