Wall clock time and date at job start Tue Mar 31 2020 17:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 109.47038 * 2 1 4 4 C 1.50700 * 109.47358 * 239.99335 * 2 1 3 5 5 H 1.08001 * 119.99806 * 246.06885 * 4 2 1 6 6 C 1.37875 * 119.99614 * 66.07065 * 4 2 1 7 7 N 1.31520 * 119.99770 * 187.17131 * 6 4 2 8 8 Si 1.86799 * 120.00492 * 7.45001 * 6 4 2 9 9 H 1.48499 * 109.46652 * 269.72704 * 8 6 4 10 10 H 1.48497 * 109.46779 * 29.72026 * 8 6 4 11 11 H 1.48492 * 109.47546 * 149.72299 * 8 6 4 12 12 N 1.46901 * 109.46998 * 119.99359 * 2 1 3 13 13 C 1.46893 * 111.00189 * 58.95663 * 12 2 1 14 14 C 1.46901 * 111.00164 * 294.99967 * 12 2 1 15 15 C 1.50695 * 109.47541 * 189.99863 * 14 12 2 16 16 O 1.21283 * 119.99658 * 0.02562 * 15 14 12 17 17 N 1.34778 * 120.00330 * 180.02562 * 15 14 12 18 18 C 1.46497 * 119.99936 * 180.02562 * 17 15 14 19 19 C 1.53003 * 109.47031 * 179.97438 * 18 17 15 20 20 H 1.09002 * 109.46681 * 65.00252 * 19 18 17 21 21 C 1.50702 * 109.47191 * 184.99917 * 19 18 17 22 22 C 1.38234 * 119.99574 * 230.53810 * 21 19 18 23 23 C 1.38241 * 119.99406 * 179.80987 * 22 21 19 24 24 C 1.38236 * 120.00193 * 0.39911 * 23 22 21 25 25 C 1.38242 * 119.99756 * 359.85418 * 24 23 22 26 26 C 1.38230 * 119.99876 * 359.95393 * 25 24 23 27 27 N 1.46900 * 109.47392 * 304.99937 * 19 18 17 28 28 C 1.46896 * 111.00085 * 170.97803 * 27 19 18 29 29 C 1.46895 * 110.99964 * 294.93631 * 27 19 18 30 30 H 1.08999 * 109.46932 * 53.95606 * 1 2 3 31 31 H 1.09006 * 109.46569 * 173.95234 * 1 2 3 32 32 H 1.08997 * 109.47081 * 293.95308 * 1 2 3 33 33 H 0.97001 * 119.99462 * 355.19217 * 7 6 4 34 34 H 1.08997 * 109.47309 * 59.99679 * 13 12 2 35 35 H 1.09000 * 109.47406 * 179.97438 * 13 12 2 36 36 H 1.09001 * 109.47291 * 299.99822 * 13 12 2 37 37 H 1.08998 * 109.47268 * 310.00548 * 14 12 2 38 38 H 1.08997 * 109.47032 * 70.00057 * 14 12 2 39 39 H 0.97001 * 119.99712 * 0.02562 * 17 15 14 40 40 H 1.08998 * 109.47363 * 300.00016 * 18 17 15 41 41 H 1.09004 * 109.47175 * 60.00107 * 18 17 15 42 42 H 1.07999 * 120.00745 * 359.97438 * 22 21 19 43 43 H 1.08006 * 119.99675 * 180.22666 * 23 22 21 44 44 H 1.07996 * 119.99896 * 179.83440 * 24 23 22 45 45 H 1.08000 * 119.99364 * 179.97438 * 25 24 23 46 46 H 1.07998 * 119.99643 * 180.02562 * 26 25 24 47 47 H 1.09002 * 109.47241 * 63.95841 * 28 27 19 48 48 H 1.09002 * 109.47312 * 183.95849 * 28 27 19 49 49 H 1.08995 * 109.47289 * 303.95593 * 28 27 19 50 50 H 1.08995 * 109.47504 * 52.05238 * 29 27 19 51 51 H 1.09005 * 109.47105 * 172.05214 * 29 27 19 52 52 H 1.08997 * 109.47450 * 292.05078 * 29 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5701 -1.6422 -1.1341 6 6 1.8056 -0.1711 -2.4788 7 7 2.1172 -0.8560 -3.5575 8 14 1.0629 1.5354 -2.6381 9 1 -0.4171 1.4277 -2.6955 10 1 1.4543 2.3570 -1.4647 11 1 1.5610 2.1781 -3.8806 12 7 2.0197 -0.6924 1.1995 13 6 1.5284 -2.0759 1.2462 14 6 1.6487 0.0394 2.4181 15 6 2.3678 -0.5567 3.6007 16 8 3.1161 -1.4982 3.4437 17 7 2.1794 -0.0437 4.8327 18 6 2.8790 -0.6229 5.9821 19 6 2.4925 0.1392 7.2513 20 1 1.4318 -0.0084 7.4549 21 6 3.3032 -0.3754 8.4128 22 6 2.6724 -0.7458 9.5857 23 6 3.4158 -1.2215 10.6497 24 6 4.7906 -1.3190 10.5437 25 6 5.4219 -0.9435 9.3725 26 6 4.6782 -0.4716 8.3072 27 7 2.7605 1.5713 7.0634 28 6 2.2073 2.3603 8.1721 29 6 4.1994 1.8213 6.9058 30 1 -0.3633 0.6047 -0.8309 31 1 -0.3633 -1.0220 -0.1083 32 1 -0.3633 0.4172 0.9391 33 1 2.5701 -1.7099 -3.4758 34 1 1.8763 -2.6150 0.3650 35 1 1.9061 -2.5656 2.1438 36 1 0.4385 -2.0741 1.2642 37 1 1.9297 1.0872 2.3124 38 1 0.5723 -0.0343 2.5726 39 1 1.5807 0.7091 4.9582 40 1 2.5987 -1.6709 6.0877 41 1 3.9554 -0.5484 5.8276 42 1 1.5987 -0.6662 9.6699 43 1 2.9226 -1.5145 11.5648 44 1 5.3716 -1.6881 11.3759 45 1 6.4960 -1.0193 9.2899 46 1 5.1713 -0.1787 7.3921 47 1 2.7127 2.0889 9.0989 48 1 2.3578 3.4215 7.9735 49 1 1.1408 2.1562 8.2666 50 1 4.5976 1.1728 6.1255 51 1 4.3589 2.8634 6.6286 52 1 4.7095 1.6134 7.8463 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184981030.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:28 Heat of formation + Delta-G solvation = -4.288946 kcal Electronic energy + Delta-G solvation = -29159.300883 eV Core-core repulsion = 25351.638834 eV Total energy + Delta-G solvation = -3807.662049 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.38899 -40.57780 -38.65814 -38.04695 -35.35173 -34.71813 -32.68654 -32.01299 -31.64543 -30.05245 -28.61361 -28.48265 -26.86870 -25.96943 -24.81911 -23.45878 -23.34499 -21.60626 -21.20094 -20.72332 -19.40375 -18.22292 -17.62438 -17.34880 -17.20844 -16.60543 -16.41473 -16.27977 -15.80900 -15.57201 -15.49031 -15.28522 -15.13757 -14.91455 -14.38716 -14.27676 -14.19488 -13.97375 -13.73544 -13.52622 -13.48679 -13.23337 -13.09017 -13.03295 -12.76609 -12.59075 -12.52619 -12.40140 -12.24097 -12.12045 -12.08640 -11.79642 -11.72690 -11.53740 -10.86201 -10.71620 -10.48743 -10.00169 -9.85637 -9.74123 -9.33726 -8.92559 -8.68475 -6.31298 0.34313 0.45425 1.45909 1.58297 1.73609 1.74554 2.16997 2.53286 2.78526 2.99963 3.14319 3.37644 3.66004 3.75590 3.99432 4.05822 4.09396 4.18450 4.22313 4.28340 4.34490 4.39611 4.48316 4.49545 4.56767 4.59641 4.61391 4.65037 4.68196 4.69012 4.75061 4.78877 4.83775 4.87945 5.02949 5.05623 5.06854 5.07635 5.10483 5.19870 5.49951 5.51807 5.54011 5.56850 5.59154 5.80045 5.96260 6.03610 6.05994 6.08100 6.27952 6.46618 6.71944 6.79468 7.41600 7.48835 8.70813 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.023503 B = 0.002255 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.045318 B =12413.181672 C =12848.206850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.181 3.819 3 H 0.045 0.955 4 C -0.577 4.577 5 H 0.016 0.984 6 C -0.032 4.032 7 N -0.950 5.950 8 Si 1.096 2.904 9 H -0.261 1.261 10 H -0.244 1.244 11 H -0.295 1.295 12 N -0.535 5.535 13 C 0.047 3.953 14 C 0.033 3.967 15 C 0.514 3.486 16 O -0.572 6.572 17 N -0.704 5.704 18 C 0.136 3.864 19 C 0.122 3.878 20 H 0.111 0.889 21 C -0.124 4.124 22 C -0.110 4.110 23 C -0.128 4.128 24 C -0.124 4.124 25 C -0.134 4.134 26 C -0.123 4.123 27 N -0.531 5.531 28 C 0.025 3.975 29 C 0.013 3.987 30 H 0.048 0.952 31 H 0.040 0.960 32 H 0.069 0.931 33 H 0.247 0.753 34 H 0.033 0.967 35 H 0.066 0.934 36 H 0.026 0.974 37 H 0.115 0.885 38 H 0.082 0.918 39 H 0.419 0.581 40 H 0.059 0.941 41 H 0.053 0.947 42 H 0.138 0.862 43 H 0.142 0.858 44 H 0.139 0.861 45 H 0.132 0.868 46 H 0.121 0.879 47 H 0.025 0.975 48 H 0.075 0.925 49 H 0.081 0.919 50 H 0.058 0.942 51 H 0.073 0.927 52 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.984 7.789 34.795 35.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.073 3.927 3 H 0.063 0.937 4 C -0.615 4.615 5 H 0.035 0.965 6 C -0.228 4.228 7 N -0.587 5.587 8 Si 0.918 3.082 9 H -0.187 1.187 10 H -0.168 1.168 11 H -0.222 1.222 12 N -0.258 5.258 13 C -0.102 4.102 14 C -0.098 4.098 15 C 0.301 3.699 16 O -0.451 6.451 17 N -0.357 5.357 18 C 0.012 3.988 19 C 0.013 3.987 20 H 0.129 0.871 21 C -0.127 4.127 22 C -0.129 4.129 23 C -0.146 4.146 24 C -0.142 4.142 25 C -0.152 4.152 26 C -0.141 4.141 27 N -0.253 5.253 28 C -0.123 4.123 29 C -0.135 4.135 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.088 0.912 33 H 0.056 0.944 34 H 0.052 0.948 35 H 0.085 0.915 36 H 0.045 0.955 37 H 0.133 0.867 38 H 0.100 0.900 39 H 0.256 0.744 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.156 0.844 43 H 0.160 0.840 44 H 0.156 0.844 45 H 0.150 0.850 46 H 0.139 0.861 47 H 0.043 0.957 48 H 0.093 0.907 49 H 0.100 0.900 50 H 0.077 0.923 51 H 0.092 0.908 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -1.715 8.373 33.139 34.224 hybrid contribution 0.556 -1.872 1.256 2.322 sum -1.159 6.501 34.396 35.024 Atomic orbital electron populations 1.22623 0.99102 1.00942 1.00975 1.19733 0.90692 0.94714 0.87544 0.93703 1.22254 1.38069 1.08238 0.92947 0.96538 1.27319 0.96549 1.07326 0.91599 1.70953 1.41083 1.15214 1.31491 0.83402 0.76868 0.71268 0.76713 1.18659 1.16837 1.22217 1.61756 1.60465 1.02318 1.01287 1.22142 0.96683 0.90426 1.00902 1.22068 0.99131 0.99835 0.88743 1.20859 0.81484 0.82808 0.84739 1.90652 1.38918 1.29890 1.85615 1.45623 1.48266 1.36482 1.05377 1.21292 0.96624 0.96512 0.84377 1.20883 1.00102 0.87693 0.90017 0.87060 1.20405 0.94419 1.01242 0.96612 1.21301 1.00759 0.98243 0.92567 1.21463 0.94277 0.99383 0.99468 1.21489 0.95327 0.99239 0.98119 1.21405 1.00773 0.99273 0.93772 1.21385 0.94090 0.99246 0.99394 1.62366 1.14938 1.04907 1.43119 1.22418 1.00577 0.98282 0.91009 1.22713 0.88041 1.02323 1.00445 0.93319 0.94070 0.91233 0.94405 0.94759 0.91532 0.95533 0.86667 0.90003 0.74384 0.92274 0.92865 0.84375 0.84031 0.84357 0.85046 0.86128 0.95663 0.90669 0.90038 0.92302 0.90813 0.94143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.09 8.05 71.98 0.58 -6.51 16 2 C 0.18 8.48 1.92 44.17 0.08 8.57 16 3 H 0.05 2.07 6.42 -2.38 -0.02 2.05 16 4 C -0.58 -33.87 8.40 25.60 0.22 -33.65 16 5 H 0.02 1.10 6.76 -2.91 -0.02 1.08 16 6 C -0.03 -1.91 5.42 84.65 0.46 -1.46 16 7 N -0.95 -61.67 13.70 21.45 0.29 -61.37 16 8 Si 1.10 50.12 25.45 68.60 1.75 51.87 16 9 H -0.26 -10.88 6.81 99.48 0.68 -10.21 16 10 H -0.24 -9.72 6.34 99.48 0.63 -9.09 16 11 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 12 N -0.53 -23.33 4.48 -906.06 -4.06 -27.39 16 13 C 0.05 2.05 8.54 127.69 1.09 3.14 16 14 C 0.03 1.05 4.90 85.56 0.42 1.47 16 15 C 0.51 16.20 7.52 87.66 0.66 16.86 16 16 O -0.57 -23.65 14.33 -3.04 -0.04 -23.69 16 17 N -0.70 -15.34 5.39 -463.06 -2.49 -17.84 16 18 C 0.14 2.80 4.63 86.38 0.40 3.20 16 19 C 0.12 1.72 2.24 44.17 0.10 1.82 16 20 H 0.11 1.26 7.80 -2.39 -0.02 1.25 16 21 C -0.12 -1.84 3.77 -19.87 -0.07 -1.91 16 22 C -0.11 -1.37 9.62 22.27 0.21 -1.15 16 23 C -0.13 -1.49 10.05 22.27 0.22 -1.27 16 24 C -0.12 -1.55 10.05 22.27 0.22 -1.32 16 25 C -0.13 -1.96 10.05 22.27 0.22 -1.74 16 26 C -0.12 -2.00 6.74 22.27 0.15 -1.85 16 27 N -0.53 -7.16 4.42 -927.75 -4.10 -11.26 16 28 C 0.02 0.25 9.34 127.69 1.19 1.45 16 29 C 0.01 0.19 7.84 127.69 1.00 1.19 16 30 H 0.05 1.94 4.68 -2.39 -0.01 1.93 16 31 H 0.04 1.73 6.73 -2.38 -0.02 1.71 16 32 H 0.07 2.17 6.47 -2.39 -0.02 2.15 16 33 H 0.25 16.49 8.72 -92.71 -0.81 15.68 16 34 H 0.03 1.73 6.42 -2.39 -0.02 1.71 16 35 H 0.07 2.85 5.83 -2.39 -0.01 2.84 16 36 H 0.03 1.05 6.42 -2.39 -0.02 1.04 16 37 H 0.12 3.20 8.00 -2.39 -0.02 3.18 16 38 H 0.08 2.16 6.80 -2.39 -0.02 2.14 16 39 H 0.42 6.87 8.14 -92.71 -0.75 6.12 16 40 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.05 1.27 5.36 -2.38 -0.01 1.26 16 42 H 0.14 1.17 7.97 -2.91 -0.02 1.15 16 43 H 0.14 1.02 8.06 -2.91 -0.02 0.99 16 44 H 0.14 1.15 8.06 -2.91 -0.02 1.13 16 45 H 0.13 1.55 8.06 -2.91 -0.02 1.53 16 46 H 0.12 2.06 5.00 -2.91 -0.01 2.05 16 47 H 0.02 0.29 7.47 -2.39 -0.02 0.27 16 48 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 49 H 0.08 0.64 8.06 -2.39 -0.02 0.62 16 50 H 0.06 1.07 5.56 -2.39 -0.01 1.05 16 51 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 52 H 0.04 0.60 5.62 -2.39 -0.01 0.59 16 Total: -1.00 -77.14 389.91 -1.46 -78.61 By element: Atomic # 1 Polarization: 24.22 SS G_CDS: 0.03 Total: 24.25 kcal Atomic # 6 Polarization: -20.34 SS G_CDS: 7.16 Total: -13.18 kcal Atomic # 7 Polarization: -107.50 SS G_CDS: -10.36 Total: -117.86 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: -0.04 Total: -23.69 kcal Atomic # 14 Polarization: 50.12 SS G_CDS: 1.75 Total: 51.87 kcal Total: -77.14 -1.46 -78.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184981030.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.318 kcal (2) G-P(sol) polarization free energy of solvation -77.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds