Wall clock time and date at job start Tue Mar 31 2020 18:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.46970 * 2 1 4 4 C 1.46503 * 120.00015 * 270.00016 * 3 2 1 5 5 C 1.34779 * 119.99971 * 89.99950 * 3 2 1 6 6 O 1.21282 * 119.99925 * 4.61794 * 5 3 2 7 7 C 1.50699 * 119.99669 * 184.61216 * 5 3 2 8 8 H 1.08995 * 109.47295 * 305.94004 * 7 5 3 9 9 C 1.53003 * 109.47092 * 65.94600 * 7 5 3 10 10 N 1.46900 * 109.46890 * 185.94246 * 7 5 3 11 11 C 1.46893 * 111.00267 * 155.00316 * 10 7 5 12 12 C 1.50700 * 109.47338 * 179.97438 * 11 10 7 13 13 C 1.38286 * 119.92581 * 269.72380 * 12 11 10 14 14 C 1.38098 * 120.07613 * 179.72727 * 13 12 11 15 15 C 1.38909 * 119.92479 * 0.54492 * 14 13 12 16 16 N 1.39672 * 120.07990 * 179.74853 * 15 14 13 17 17 C 1.46497 * 120.00392 * 179.97438 * 16 15 14 18 18 C 1.46500 * 119.99583 * 359.97438 * 16 15 14 19 19 C 1.50706 * 109.47314 * 89.99974 * 18 16 15 20 20 H 1.08008 * 119.99694 * 359.97438 * 19 18 16 21 21 C 1.37875 * 120.00473 * 179.97438 * 19 18 16 22 22 N 1.31509 * 120.00065 * 179.97438 * 21 19 18 23 23 Si 1.86798 * 119.99781 * 0.02562 * 21 19 18 24 24 H 1.48492 * 109.47519 * 89.99643 * 23 21 19 25 25 H 1.48499 * 109.46928 * 210.00008 * 23 21 19 26 26 H 1.48502 * 109.46925 * 329.99582 * 23 21 19 27 27 C 1.38922 * 119.84949 * 359.73249 * 15 14 13 28 28 C 1.38102 * 119.92135 * 359.97438 * 27 15 14 29 29 H 1.08997 * 109.47438 * 59.99696 * 1 2 3 30 30 H 1.08998 * 109.47511 * 180.02562 * 1 2 3 31 31 H 1.09012 * 109.46938 * 300.00176 * 1 2 3 32 32 H 1.08995 * 109.46717 * 240.00051 * 2 1 3 33 33 H 1.08997 * 109.46911 * 119.99516 * 2 1 3 34 34 H 1.08995 * 109.46937 * 275.85783 * 4 3 2 35 35 H 1.09007 * 109.46752 * 35.84864 * 4 3 2 36 36 H 1.08990 * 109.47141 * 155.85009 * 4 3 2 37 37 H 1.08991 * 109.47128 * 69.14330 * 9 7 5 38 38 H 1.08998 * 109.47351 * 189.15165 * 9 7 5 39 39 H 1.09000 * 109.46542 * 309.15092 * 9 7 5 40 40 H 1.00902 * 111.00282 * 31.04314 * 10 7 5 41 41 H 1.09005 * 109.47460 * 59.99784 * 11 10 7 42 42 H 1.08998 * 109.47388 * 299.99999 * 11 10 7 43 43 H 1.08003 * 119.95826 * 359.97438 * 13 12 11 44 44 H 1.07997 * 120.03973 * 180.27653 * 14 13 12 45 45 H 1.09001 * 109.47449 * 90.00194 * 17 16 15 46 46 H 1.09007 * 109.47368 * 210.00213 * 17 16 15 47 47 H 1.09003 * 109.47226 * 329.99830 * 17 16 15 48 48 H 1.09000 * 109.47468 * 209.99480 * 18 16 15 49 49 H 1.08994 * 109.47543 * 329.99820 * 18 16 15 50 50 H 0.97004 * 119.99782 * 180.02562 * 22 21 19 51 51 H 1.07997 * 120.03643 * 179.97438 * 27 15 14 52 52 H 1.08002 * 119.95879 * 179.97438 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 2.2429 2.0166 1.1672 6 8 2.1215 1.4195 2.2158 7 6 2.6451 3.4690 1.1693 8 1 3.5200 3.6046 0.5337 9 6 1.4901 4.3187 0.6354 10 7 2.9667 3.8860 2.5406 11 6 3.8902 5.0283 2.5406 12 6 4.1958 5.4273 3.9613 13 6 3.4072 6.3676 4.5986 14 6 3.6811 6.7314 5.9024 15 6 4.7569 6.1599 6.5699 16 7 5.0399 6.5294 7.8868 17 6 6.1746 5.9252 8.5894 18 6 4.2020 7.5211 8.5655 19 6 3.0686 6.8225 9.2715 20 1 2.9809 5.7472 9.2194 21 6 2.1435 7.5558 9.9838 22 7 1.1542 6.9462 10.5994 23 14 2.2947 9.4155 10.0732 24 1 1.5446 10.0280 8.9475 25 1 1.7340 9.8963 11.3615 26 1 3.7260 9.8007 9.9820 27 6 5.5505 5.2198 5.9248 28 6 5.2674 4.8562 4.6229 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 3.2566 1.8168 -1.6358 35 1 1.5151 1.7636 -1.9999 36 1 2.1973 3.1489 -1.1146 37 1 0.6714 4.3121 1.3549 38 1 1.8321 5.3424 0.4834 39 1 1.1440 3.9067 -0.3125 40 1 3.3432 3.1165 3.0737 41 1 3.4302 5.8676 2.0188 42 1 4.8142 4.7485 2.0347 43 1 2.5738 6.8151 4.0774 44 1 3.0621 7.4626 6.4010 45 1 7.0680 6.5266 8.4214 46 1 5.9603 5.8834 9.6574 47 1 6.3398 4.9159 8.2123 48 1 4.8022 8.0667 9.2936 49 1 3.7981 8.2187 7.8318 50 1 0.5032 7.4622 11.1003 51 1 6.3880 4.7739 6.4407 52 1 5.8842 4.1256 4.1207 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188895078.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:56 Heat of formation + Delta-G solvation = 13.642138 kcal Electronic energy + Delta-G solvation = -28402.113841 eV Core-core repulsion = 24595.229342 eV Total energy + Delta-G solvation = -3806.884499 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.45820 -39.05314 -36.83183 -36.09737 -35.31001 -32.70750 -32.20428 -30.70884 -30.51213 -28.87558 -28.24904 -27.20483 -25.91012 -24.77165 -23.83136 -22.30449 -21.75053 -21.36612 -19.63314 -19.29377 -17.52669 -16.94403 -16.89857 -16.50766 -15.88095 -15.68432 -15.12677 -14.80408 -14.49828 -14.31204 -14.00571 -13.88154 -13.68984 -13.48826 -13.33611 -13.13568 -13.05830 -12.98258 -12.90181 -12.50075 -12.34206 -12.25887 -12.23456 -11.87772 -11.66839 -11.57980 -11.47179 -11.41884 -11.35427 -10.98180 -10.69909 -10.58329 -10.22955 -10.04010 -9.85117 -9.55120 -9.03631 -8.89742 -8.62539 -8.42683 -8.27044 -6.39073 -6.10682 -4.10691 2.10522 2.17172 2.38259 2.65288 3.24135 3.31736 3.32247 4.04880 4.11811 4.19550 4.35233 4.62271 4.64049 4.72701 4.80682 4.84483 4.91877 5.07206 5.09775 5.15305 5.19310 5.25275 5.31238 5.36841 5.44065 5.51888 5.55559 5.59367 5.63127 5.76331 5.81758 5.86383 5.98498 6.02836 6.05786 6.17669 6.25199 6.34589 6.40535 6.57139 6.76508 6.77808 6.84787 7.02169 7.08695 7.09806 7.28860 7.44028 7.55155 7.57520 7.92768 8.07535 8.36763 8.54789 8.97609 9.48894 11.02439 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.015890 B = 0.002229 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.721884 B =12558.822222 C =13122.708300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.110 3.890 3 N -0.620 5.620 4 C 0.063 3.937 5 C 0.512 3.488 6 O -0.522 6.522 7 C 0.068 3.932 8 H 0.064 0.936 9 C -0.145 4.145 10 N -0.666 5.666 11 C 0.117 3.883 12 C -0.170 4.170 13 C -0.048 4.048 14 C -0.188 4.188 15 C 0.242 3.758 16 N -0.611 5.611 17 C 0.099 3.901 18 C 0.220 3.780 19 C -0.534 4.534 20 H 0.077 0.923 21 C 0.072 3.928 22 N -0.894 5.894 23 Si 0.872 3.128 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.266 1.266 27 C -0.218 4.218 28 C -0.066 4.066 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.056 0.944 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.356 0.644 41 H 0.073 0.927 42 H 0.028 0.972 43 H 0.113 0.887 44 H 0.128 0.872 45 H 0.036 0.964 46 H 0.069 0.931 47 H 0.057 0.943 48 H 0.027 0.973 49 H 0.027 0.973 50 H 0.265 0.735 51 H 0.114 0.886 52 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.186 -7.874 -26.244 27.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.013 4.013 3 N -0.355 5.355 4 C -0.080 4.080 5 C 0.299 3.701 6 O -0.396 6.396 7 C -0.046 4.046 8 H 0.082 0.918 9 C -0.203 4.203 10 N -0.302 5.302 11 C -0.011 4.011 12 C -0.173 4.173 13 C -0.068 4.068 14 C -0.211 4.211 15 C 0.135 3.865 16 N -0.317 5.317 17 C -0.045 4.045 18 C 0.099 3.901 19 C -0.573 4.573 20 H 0.095 0.905 21 C -0.131 4.131 22 N -0.532 5.532 23 Si 0.699 3.301 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.191 1.191 27 C -0.241 4.241 28 C -0.085 4.085 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.103 0.897 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.106 0.894 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.178 0.822 41 H 0.092 0.908 42 H 0.046 0.954 43 H 0.131 0.869 44 H 0.146 0.854 45 H 0.054 0.946 46 H 0.087 0.913 47 H 0.076 0.924 48 H 0.045 0.955 49 H 0.045 0.955 50 H 0.075 0.925 51 H 0.132 0.868 52 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 4.455 -7.720 -25.245 26.772 hybrid contribution 0.638 0.422 -0.092 0.771 sum 5.093 -7.298 -25.336 26.854 Atomic orbital electron populations 1.22131 0.95764 1.02305 1.02427 1.21418 0.94505 0.82181 1.03151 1.47862 1.67006 1.14411 1.06244 1.22127 1.01341 0.99006 0.85499 1.20823 0.76854 0.89080 0.83302 1.90732 1.50537 1.67372 1.30960 1.21477 0.99128 0.90988 0.92957 0.91796 1.21962 0.98041 0.99598 1.00702 1.60521 1.48775 1.11161 1.09738 1.20731 0.92877 0.93269 0.94232 1.19129 0.99334 1.02860 0.95989 1.20625 0.96902 0.95497 0.93731 1.20827 0.99638 1.05358 0.95249 1.17930 0.92447 0.91602 0.84492 1.46713 1.30672 1.44497 1.09803 1.21492 0.88092 0.97087 0.97863 1.19658 0.90530 0.87698 0.92183 1.21484 1.08599 0.96209 1.30968 0.90536 1.24904 0.94917 0.98282 0.94959 1.69906 1.14259 1.35865 1.33202 0.86911 0.78902 0.86272 0.78008 1.19891 1.20984 1.19055 1.20511 1.03767 1.03646 0.96132 1.20518 0.96302 0.97783 0.93939 0.92658 0.91540 0.92029 0.90695 0.89719 0.92565 0.91151 0.89369 0.90799 0.91381 0.91624 0.82242 0.90832 0.95370 0.86895 0.85391 0.94569 0.91268 0.92392 0.95469 0.95482 0.92523 0.86804 0.87635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.22 10.24 37.16 0.38 -0.84 16 2 C 0.11 0.85 6.19 -4.04 -0.02 0.82 16 3 N -0.62 -5.22 2.87 -181.57 -0.52 -5.74 16 4 C 0.06 0.30 9.74 59.85 0.58 0.88 16 5 C 0.51 6.00 6.98 -10.99 -0.08 5.93 16 6 O -0.52 -8.38 15.28 5.56 0.08 -8.29 16 7 C 0.07 0.69 2.19 -68.86 -0.15 0.54 16 8 H 0.06 0.53 7.38 -51.93 -0.38 0.14 16 9 C -0.15 -1.24 8.83 37.16 0.33 -0.91 16 10 N -0.67 -8.85 6.14 -109.23 -0.67 -9.52 16 11 C 0.12 1.45 5.61 -4.98 -0.03 1.42 16 12 C -0.17 -2.66 5.39 -104.59 -0.56 -3.23 16 13 C -0.05 -0.84 9.69 -39.62 -0.38 -1.22 16 14 C -0.19 -3.83 9.21 -39.38 -0.36 -4.19 16 15 C 0.24 4.93 6.55 -83.78 -0.55 4.38 16 16 N -0.61 -13.03 2.99 -180.99 -0.54 -13.57 16 17 C 0.10 1.73 10.19 59.85 0.61 2.34 16 18 C 0.22 5.27 3.98 -5.19 -0.02 5.25 16 19 C -0.53 -15.11 9.94 -34.44 -0.34 -15.45 16 20 H 0.08 2.44 8.06 -52.48 -0.42 2.02 16 21 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 22 N -0.89 -27.44 13.96 55.43 0.77 -26.67 16 23 Si 0.87 20.98 27.47 -169.99 -4.67 16.31 16 24 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 27 C -0.22 -3.84 9.21 -39.38 -0.36 -4.20 16 28 C -0.07 -1.04 9.69 -39.62 -0.38 -1.43 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 32 H 0.07 0.39 8.07 -51.93 -0.42 -0.03 16 33 H 0.08 0.82 7.36 -51.93 -0.38 0.43 16 34 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 35 H 0.07 0.23 8.12 -51.92 -0.42 -0.19 16 36 H 0.09 0.37 4.11 -51.93 -0.21 0.16 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.52 7.71 -51.93 -0.40 0.12 16 39 H 0.07 0.41 5.42 -51.93 -0.28 0.13 16 40 H 0.36 5.34 7.53 -39.29 -0.30 5.05 16 41 H 0.07 0.83 7.57 -51.93 -0.39 0.44 16 42 H 0.03 0.31 8.00 -51.93 -0.42 -0.11 16 43 H 0.11 1.77 8.06 -52.48 -0.42 1.35 16 44 H 0.13 2.79 6.14 -52.49 -0.32 2.47 16 45 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.07 1.25 8.07 -51.92 -0.42 0.83 16 47 H 0.06 0.92 6.20 -51.93 -0.32 0.60 16 48 H 0.03 0.64 7.13 -51.93 -0.37 0.27 16 49 H 0.03 0.64 5.63 -51.93 -0.29 0.35 16 50 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 51 H 0.11 1.81 6.14 -52.49 -0.32 1.49 16 52 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 410.47 15.07 6.19 6.19 Total: -1.00 -33.88 410.47 -9.43 -43.31 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -8.63 Total: 5.94 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: -1.45 Total: -7.95 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: -0.96 Total: -55.50 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: 0.08 Total: -8.29 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.67 Total: 16.31 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -33.88 -9.43 -43.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188895078.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.949 kcal (2) G-P(sol) polarization free energy of solvation -33.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds