Wall clock time and date at job start Tue Mar 31 2020 18:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.46970 * 2 1 4 4 C 1.46503 * 120.00015 * 270.00016 * 3 2 1 5 5 C 1.34779 * 119.99971 * 89.99950 * 3 2 1 6 6 O 1.21282 * 119.99925 * 4.61794 * 5 3 2 7 7 C 1.50699 * 119.99669 * 184.61216 * 5 3 2 8 8 H 1.08995 * 109.47295 * 305.94004 * 7 5 3 9 9 C 1.53003 * 109.47092 * 65.94600 * 7 5 3 10 10 N 1.46900 * 109.46890 * 185.94246 * 7 5 3 11 11 C 1.46893 * 111.00267 * 155.00316 * 10 7 5 12 12 C 1.50700 * 109.47338 * 179.97438 * 11 10 7 13 13 C 1.38286 * 119.92581 * 269.72380 * 12 11 10 14 14 C 1.38098 * 120.07613 * 179.72727 * 13 12 11 15 15 C 1.38909 * 119.92479 * 0.54492 * 14 13 12 16 16 N 1.39672 * 120.07990 * 179.74853 * 15 14 13 17 17 C 1.46497 * 120.00392 * 179.97438 * 16 15 14 18 18 C 1.46500 * 119.99583 * 359.97438 * 16 15 14 19 19 C 1.50706 * 109.47314 * 89.99974 * 18 16 15 20 20 H 1.08008 * 119.99694 * 359.97438 * 19 18 16 21 21 C 1.37875 * 120.00473 * 179.97438 * 19 18 16 22 22 N 1.31509 * 120.00065 * 179.97438 * 21 19 18 23 23 Si 1.86798 * 119.99781 * 0.02562 * 21 19 18 24 24 H 1.48492 * 109.47519 * 89.99643 * 23 21 19 25 25 H 1.48499 * 109.46928 * 210.00008 * 23 21 19 26 26 H 1.48502 * 109.46925 * 329.99582 * 23 21 19 27 27 C 1.38922 * 119.84949 * 359.73249 * 15 14 13 28 28 C 1.38102 * 119.92135 * 359.97438 * 27 15 14 29 29 H 1.08997 * 109.47438 * 59.99696 * 1 2 3 30 30 H 1.08998 * 109.47511 * 180.02562 * 1 2 3 31 31 H 1.09012 * 109.46938 * 300.00176 * 1 2 3 32 32 H 1.08995 * 109.46717 * 240.00051 * 2 1 3 33 33 H 1.08997 * 109.46911 * 119.99516 * 2 1 3 34 34 H 1.08995 * 109.46937 * 275.85783 * 4 3 2 35 35 H 1.09007 * 109.46752 * 35.84864 * 4 3 2 36 36 H 1.08990 * 109.47141 * 155.85009 * 4 3 2 37 37 H 1.08991 * 109.47128 * 69.14330 * 9 7 5 38 38 H 1.08998 * 109.47351 * 189.15165 * 9 7 5 39 39 H 1.09000 * 109.46542 * 309.15092 * 9 7 5 40 40 H 1.00902 * 111.00282 * 31.04314 * 10 7 5 41 41 H 1.09005 * 109.47460 * 59.99784 * 11 10 7 42 42 H 1.08998 * 109.47388 * 299.99999 * 11 10 7 43 43 H 1.08003 * 119.95826 * 359.97438 * 13 12 11 44 44 H 1.07997 * 120.03973 * 180.27653 * 14 13 12 45 45 H 1.09001 * 109.47449 * 90.00194 * 17 16 15 46 46 H 1.09007 * 109.47368 * 210.00213 * 17 16 15 47 47 H 1.09003 * 109.47226 * 329.99830 * 17 16 15 48 48 H 1.09000 * 109.47468 * 209.99480 * 18 16 15 49 49 H 1.08994 * 109.47543 * 329.99820 * 18 16 15 50 50 H 0.97004 * 119.99782 * 180.02562 * 22 21 19 51 51 H 1.07997 * 120.03643 * 179.97438 * 27 15 14 52 52 H 1.08002 * 119.95879 * 179.97438 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 2.2429 2.0166 1.1672 6 8 2.1215 1.4195 2.2158 7 6 2.6451 3.4690 1.1693 8 1 3.5200 3.6046 0.5337 9 6 1.4901 4.3187 0.6354 10 7 2.9667 3.8860 2.5406 11 6 3.8902 5.0283 2.5406 12 6 4.1958 5.4273 3.9613 13 6 3.4072 6.3676 4.5986 14 6 3.6811 6.7314 5.9024 15 6 4.7569 6.1599 6.5699 16 7 5.0399 6.5294 7.8868 17 6 6.1746 5.9252 8.5894 18 6 4.2020 7.5211 8.5655 19 6 3.0686 6.8225 9.2715 20 1 2.9809 5.7472 9.2194 21 6 2.1435 7.5558 9.9838 22 7 1.1542 6.9462 10.5994 23 14 2.2947 9.4155 10.0732 24 1 1.5446 10.0280 8.9475 25 1 1.7340 9.8963 11.3615 26 1 3.7260 9.8007 9.9820 27 6 5.5505 5.2198 5.9248 28 6 5.2674 4.8562 4.6229 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 3.2566 1.8168 -1.6358 35 1 1.5151 1.7636 -1.9999 36 1 2.1973 3.1489 -1.1146 37 1 0.6714 4.3121 1.3549 38 1 1.8321 5.3424 0.4834 39 1 1.1440 3.9067 -0.3125 40 1 3.3432 3.1165 3.0737 41 1 3.4302 5.8676 2.0188 42 1 4.8142 4.7485 2.0347 43 1 2.5738 6.8151 4.0774 44 1 3.0621 7.4626 6.4010 45 1 7.0680 6.5266 8.4214 46 1 5.9603 5.8834 9.6574 47 1 6.3398 4.9159 8.2123 48 1 4.8022 8.0667 9.2936 49 1 3.7981 8.2187 7.8318 50 1 0.5032 7.4622 11.1003 51 1 6.3880 4.7739 6.4407 52 1 5.8842 4.1256 4.1207 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188895078.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:55 Heat of formation + Delta-G solvation = -8.951352 kcal Electronic energy + Delta-G solvation = -28403.093568 eV Core-core repulsion = 24595.229342 eV Total energy + Delta-G solvation = -3807.864226 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.27871 -40.44429 -37.99015 -36.96509 -36.52939 -34.73849 -33.16026 -31.99366 -31.61697 -30.28414 -29.70504 -27.77220 -27.14634 -25.87951 -25.03224 -23.62999 -22.97250 -22.59411 -21.04060 -20.09126 -19.08821 -18.46099 -17.98589 -17.64772 -16.91770 -16.58993 -16.39690 -16.07643 -15.83690 -15.52514 -15.20476 -15.08251 -14.81710 -14.61735 -14.43450 -14.35346 -14.33844 -13.99545 -13.68288 -13.50823 -13.43296 -13.32727 -13.20634 -13.10072 -13.06031 -12.86358 -12.65723 -12.42441 -12.40900 -12.23157 -12.06698 -11.95548 -11.89789 -11.74453 -11.45781 -10.83213 -10.72787 -10.42831 -9.71181 -9.67737 -9.34601 -8.33869 -7.92375 -6.39650 0.70008 0.80515 1.33396 1.35083 1.45658 1.54349 1.98457 2.30198 2.53387 2.98425 3.00120 3.44203 3.49574 4.03063 4.05991 4.09210 4.14566 4.20676 4.22251 4.27983 4.30431 4.40874 4.47411 4.51139 4.60865 4.64123 4.69673 4.71278 4.75466 4.78584 4.80829 4.82659 4.88756 4.90695 4.96772 5.02663 5.05018 5.08029 5.25702 5.29004 5.36105 5.44971 5.56597 5.59213 5.62585 5.90618 6.03578 6.08880 6.22116 6.31079 6.42047 6.59273 6.69195 6.86084 7.13030 7.25807 8.83964 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.015890 B = 0.002229 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.721884 B =12558.822222 C =13122.708300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.105 3.895 3 N -0.614 5.614 4 C 0.055 3.945 5 C 0.503 3.497 6 O -0.580 6.580 7 C 0.071 3.929 8 H 0.095 0.905 9 C -0.141 4.141 10 N -0.689 5.689 11 C 0.122 3.878 12 C -0.160 4.160 13 C -0.055 4.055 14 C -0.218 4.218 15 C 0.210 3.790 16 N -0.629 5.629 17 C 0.097 3.903 18 C 0.232 3.768 19 C -0.537 4.537 20 H 0.021 0.979 21 C 0.009 3.991 22 N -0.948 5.948 23 Si 0.950 3.050 24 H -0.265 1.265 25 H -0.279 1.279 26 H -0.242 1.242 27 C -0.217 4.217 28 C -0.064 4.064 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.027 0.973 32 H 0.108 0.892 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.044 0.956 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.343 0.657 41 H 0.089 0.911 42 H 0.054 0.946 43 H 0.126 0.874 44 H 0.101 0.899 45 H 0.064 0.936 46 H 0.055 0.945 47 H 0.071 0.929 48 H 0.037 0.963 49 H 0.030 0.970 50 H 0.268 0.732 51 H 0.132 0.868 52 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.970 -7.032 -30.224 31.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.017 4.017 3 N -0.347 5.347 4 C -0.086 4.086 5 C 0.292 3.708 6 O -0.459 6.459 7 C -0.042 4.042 8 H 0.112 0.888 9 C -0.199 4.199 10 N -0.323 5.323 11 C -0.005 4.005 12 C -0.163 4.163 13 C -0.074 4.074 14 C -0.241 4.241 15 C 0.106 3.894 16 N -0.337 5.337 17 C -0.046 4.046 18 C 0.109 3.891 19 C -0.576 4.576 20 H 0.039 0.961 21 C -0.189 4.189 22 N -0.588 5.588 23 Si 0.772 3.228 24 H -0.190 1.190 25 H -0.205 1.205 26 H -0.165 1.165 27 C -0.240 4.240 28 C -0.083 4.083 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.047 0.953 32 H 0.126 0.874 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.110 0.890 36 H 0.115 0.885 37 H 0.063 0.937 38 H 0.101 0.899 39 H 0.110 0.890 40 H 0.163 0.837 41 H 0.107 0.893 42 H 0.072 0.928 43 H 0.144 0.856 44 H 0.119 0.881 45 H 0.082 0.918 46 H 0.074 0.926 47 H 0.090 0.910 48 H 0.055 0.945 49 H 0.048 0.952 50 H 0.077 0.923 51 H 0.150 0.850 52 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 6.265 -6.892 -29.319 30.763 hybrid contribution 0.046 -0.044 0.966 0.968 sum 6.311 -6.936 -28.353 29.863 Atomic orbital electron populations 1.22079 0.95481 1.02926 1.01543 1.21527 0.94728 0.82042 1.03404 1.47993 1.65375 1.14618 1.06710 1.22419 1.03046 0.99216 0.83933 1.21211 0.76452 0.89729 0.83423 1.90706 1.53397 1.68612 1.33164 1.21573 1.00676 0.90100 0.91804 0.88754 1.21972 0.96521 1.00379 1.00995 1.60480 1.49083 1.10997 1.11760 1.20745 0.94154 0.93587 0.92056 1.19545 0.98123 1.01008 0.97594 1.20833 0.97610 0.96077 0.92861 1.20822 1.00267 1.06211 0.96762 1.18229 0.93538 0.93144 0.84494 1.46697 1.31489 1.45031 1.10474 1.21632 0.87878 0.98264 0.96801 1.19339 0.89533 0.88123 0.92074 1.21670 1.10546 0.93872 1.31469 0.96090 1.25926 0.94186 1.04485 0.94271 1.70081 1.15625 1.38399 1.34663 0.85687 0.80313 0.78590 0.78230 1.18955 1.20484 1.16486 1.20783 1.03694 1.02588 0.96910 1.20932 0.96423 0.97667 0.93282 0.90908 0.90298 0.95337 0.87385 0.92451 0.90909 0.89039 0.88543 0.93706 0.89916 0.89026 0.83696 0.89282 0.92844 0.85643 0.88096 0.91806 0.92620 0.91002 0.94494 0.95191 0.92309 0.85045 0.84325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 10.24 71.98 0.74 -1.46 16 2 C 0.11 1.48 6.19 86.38 0.53 2.02 16 3 N -0.61 -9.11 2.87 -846.75 -2.43 -11.54 16 4 C 0.05 0.30 9.74 127.77 1.24 1.55 16 5 C 0.50 11.40 6.98 87.66 0.61 12.02 16 6 O -0.58 -19.32 15.28 -3.04 -0.05 -19.37 16 7 C 0.07 1.29 2.19 44.17 0.10 1.38 16 8 H 0.09 1.15 7.38 -2.39 -0.02 1.14 16 9 C -0.14 -2.07 8.83 71.98 0.64 -1.43 16 10 N -0.69 -17.31 6.14 -499.48 -3.07 -20.38 16 11 C 0.12 2.66 5.61 85.56 0.48 3.14 16 12 C -0.16 -4.73 5.39 -19.84 -0.11 -4.84 16 13 C -0.05 -1.90 9.69 22.25 0.22 -1.69 16 14 C -0.22 -9.17 9.21 22.40 0.21 -8.97 16 15 C 0.21 8.72 6.55 38.22 0.25 8.97 16 16 N -0.63 -27.36 2.99 -726.54 -2.17 -29.53 16 17 C 0.10 3.38 10.19 127.77 1.30 4.68 16 18 C 0.23 11.33 3.98 85.63 0.34 11.68 16 19 C -0.54 -31.95 9.94 25.60 0.25 -31.70 16 20 H 0.02 1.43 8.06 -2.91 -0.02 1.41 16 21 C 0.01 0.54 5.47 84.65 0.46 1.00 16 22 N -0.95 -60.83 13.96 21.45 0.30 -60.53 16 23 Si 0.95 43.98 27.47 68.60 1.88 45.86 16 24 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 25 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 26 H -0.24 -10.17 6.54 99.48 0.65 -9.52 16 27 C -0.22 -7.43 9.21 22.40 0.21 -7.23 16 28 C -0.06 -1.88 9.69 22.25 0.22 -1.67 16 29 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.03 0.57 8.14 -2.38 -0.02 0.55 16 32 H 0.11 0.81 8.07 -2.39 -0.02 0.79 16 33 H 0.06 1.14 7.36 -2.39 -0.02 1.12 16 34 H 0.07 0.23 8.14 -2.39 -0.02 0.21 16 35 H 0.09 0.18 8.12 -2.38 -0.02 0.16 16 36 H 0.10 0.38 4.11 -2.39 -0.01 0.37 16 37 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.08 0.98 7.71 -2.39 -0.02 0.96 16 39 H 0.09 0.84 5.42 -2.39 -0.01 0.82 16 40 H 0.34 10.14 7.53 -89.69 -0.68 9.46 16 41 H 0.09 1.69 7.57 -2.38 -0.02 1.67 16 42 H 0.05 0.93 8.00 -2.39 -0.02 0.91 16 43 H 0.13 3.92 8.06 -2.91 -0.02 3.90 16 44 H 0.10 4.68 6.14 -2.91 -0.02 4.66 16 45 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 46 H 0.05 2.04 8.07 -2.38 -0.02 2.02 16 47 H 0.07 2.24 6.20 -2.39 -0.01 2.23 16 48 H 0.04 1.73 7.13 -2.39 -0.02 1.71 16 49 H 0.03 1.45 5.63 -2.39 -0.01 1.44 16 50 H 0.27 15.95 8.31 -92.70 -0.77 15.18 16 51 H 0.13 3.94 6.14 -2.91 -0.02 3.92 16 52 H 0.14 3.17 8.06 -2.91 -0.02 3.14 16 Total: -1.00 -80.88 410.47 2.33 -78.55 By element: Atomic # 1 Polarization: 29.30 SS G_CDS: 0.18 Total: 29.48 kcal Atomic # 6 Polarization: -20.23 SS G_CDS: 7.69 Total: -12.55 kcal Atomic # 7 Polarization: -114.60 SS G_CDS: -7.37 Total: -121.97 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.05 Total: -19.37 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 1.88 Total: 45.86 kcal Total: -80.88 2.33 -78.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188895078.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.594 kcal (2) G-P(sol) polarization free energy of solvation -80.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds