Wall clock time and date at job start Tue Mar 31 2020 17:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47100 * 2 1 4 4 C 1.50703 * 109.47092 * 119.99636 * 2 1 3 5 5 H 1.07995 * 119.99476 * 119.99824 * 4 2 1 6 6 C 1.37880 * 119.99820 * 299.99913 * 4 2 1 7 7 N 1.31512 * 120.00030 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99531 * 179.97438 * 6 4 2 9 9 H 1.48509 * 109.47060 * 269.99926 * 8 6 4 10 10 H 1.48500 * 109.47231 * 29.99797 * 8 6 4 11 11 H 1.48501 * 109.46923 * 150.00411 * 8 6 4 12 12 N 1.46893 * 109.47192 * 239.99731 * 2 1 3 13 13 C 1.46900 * 111.00335 * 183.95201 * 12 2 1 14 14 C 1.46907 * 110.99911 * 60.00136 * 12 2 1 15 15 C 1.50698 * 109.46943 * 190.00037 * 14 12 2 16 16 O 1.21279 * 120.00356 * 359.97438 * 15 14 12 17 17 N 1.34781 * 120.00102 * 179.97438 * 15 14 12 18 18 C 1.46496 * 119.99931 * 179.97438 * 17 15 14 19 19 C 1.53008 * 109.46899 * 174.77850 * 18 17 15 20 20 H 1.08997 * 109.46705 * 56.59991 * 19 18 17 21 21 C 1.50706 * 109.46785 * 296.60123 * 19 18 17 22 22 C 1.38230 * 120.00320 * 279.72326 * 21 19 18 23 23 C 1.38232 * 120.00187 * 179.78981 * 22 21 19 24 24 C 1.38237 * 119.99993 * 0.44291 * 23 22 21 25 25 C 1.38242 * 119.99859 * 359.81684 * 24 23 22 26 26 C 1.38234 * 119.99792 * 359.97256 * 25 24 23 27 27 N 1.46895 * 109.47155 * 176.60551 * 19 18 17 28 28 C 1.46902 * 110.99870 * 182.17783 * 27 19 18 29 29 C 1.46899 * 110.99730 * 306.12751 * 27 19 18 30 30 H 1.08998 * 109.47350 * 60.00212 * 1 2 3 31 31 H 1.09001 * 109.47261 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47090 * 300.00308 * 1 2 3 33 33 H 0.97005 * 119.99666 * 180.02562 * 7 6 4 34 34 H 1.09004 * 109.46795 * 59.99842 * 13 12 2 35 35 H 1.09002 * 109.47246 * 179.97438 * 13 12 2 36 36 H 1.08997 * 109.46930 * 300.00586 * 13 12 2 37 37 H 1.09001 * 109.46536 * 309.99481 * 14 12 2 38 38 H 1.08997 * 109.47364 * 70.00015 * 14 12 2 39 39 H 0.96998 * 119.99420 * 359.97438 * 17 15 14 40 40 H 1.08994 * 109.47853 * 294.77507 * 18 17 15 41 41 H 1.09002 * 109.47085 * 54.78186 * 18 17 15 42 42 H 1.08005 * 120.00060 * 0.02562 * 22 21 19 43 43 H 1.07997 * 120.00485 * 180.27829 * 23 22 21 44 44 H 1.07997 * 120.00215 * 179.83277 * 24 23 22 45 45 H 1.07997 * 120.00158 * 180.02562 * 25 24 23 46 46 H 1.07997 * 119.99559 * 180.02562 * 26 25 24 47 47 H 1.09001 * 109.47383 * 63.95342 * 28 27 19 48 48 H 1.09007 * 109.46903 * 183.95399 * 28 27 19 49 49 H 1.09000 * 109.47034 * 303.95027 * 28 27 19 50 50 H 1.09002 * 109.47324 * 66.49424 * 29 27 19 51 51 H 1.09008 * 109.47077 * 186.48667 * 29 27 19 52 52 H 1.09002 * 109.47274 * 306.48838 * 29 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8298 2.6033 8 14 2.3213 -1.1201 4.0080 9 1 1.3426 -2.1615 4.4120 10 1 3.6292 -1.7582 3.7122 11 1 2.4865 -0.1411 5.1123 12 7 2.0196 -0.6925 -1.1993 13 6 3.4850 -0.7945 -1.1870 14 6 1.5486 -0.0264 -2.4211 15 6 1.8579 -0.8912 -3.6158 16 8 2.4162 -1.9572 -3.4646 17 7 1.5142 -0.4800 -4.8525 18 6 1.8154 -1.3205 -6.0139 19 6 1.2101 -0.6904 -7.2701 20 1 1.5896 0.3247 -7.3862 21 6 -0.2909 -0.6539 -7.1403 22 6 -1.0350 -1.7895 -7.3998 23 6 -2.4114 -1.7571 -7.2766 24 6 -3.0445 -0.5866 -6.9027 25 6 -2.3008 0.5507 -6.6483 26 6 -0.9240 0.5171 -6.7673 27 7 1.5806 -1.4893 -8.4458 28 6 1.0591 -0.8846 -9.6788 29 6 3.0365 -1.6690 -8.5225 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 0.7087 1.1615 3.4844 34 1 3.8029 -1.3531 -0.3066 35 1 3.8208 -1.3117 -2.0858 36 1 3.9186 0.2051 -1.1591 37 1 0.4722 0.1323 -2.3563 38 1 2.0518 0.9345 -2.5281 39 1 1.0673 0.3724 -4.9733 40 1 2.8957 -1.4022 -6.1330 41 1 1.3902 -2.3129 -5.8643 42 1 -0.5406 -2.7032 -7.6952 43 1 -2.9924 -2.6456 -7.4750 44 1 -4.1201 -0.5605 -6.8090 45 1 -2.7954 1.4651 -6.3558 46 1 -0.3431 1.4054 -6.5682 47 1 1.5240 0.0896 -9.8306 48 1 1.2871 -1.5320 -10.5256 49 1 -0.0209 -0.7627 -9.5951 50 1 3.3717 -2.2814 -7.6854 51 1 3.2927 -2.1634 -9.4597 52 1 3.5255 -0.6958 -8.4796 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000248392768.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:41 Heat of formation + Delta-G solvation = 16.699440 kcal Electronic energy + Delta-G solvation = -29293.620774 eV Core-core repulsion = 25486.868850 eV Total energy + Delta-G solvation = -3806.751924 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -40.29899 -39.17815 -37.64918 -36.41465 -34.48229 -32.68318 -31.85221 -31.04366 -29.58504 -29.05400 -27.81608 -27.28547 -25.02631 -24.23134 -23.16660 -23.08071 -22.44359 -20.45551 -20.29811 -19.23363 -17.22666 -16.97509 -16.49801 -16.05804 -15.92259 -15.57304 -15.17439 -14.72205 -14.69552 -14.57528 -14.49961 -14.05532 -13.60323 -13.53263 -13.46463 -13.34293 -12.86592 -12.68791 -12.56005 -12.47658 -12.26586 -12.07715 -11.93991 -11.67607 -11.54101 -11.18481 -11.06278 -11.01880 -10.94526 -10.73615 -10.59752 -10.12959 -10.07322 -9.91993 -9.21607 -9.07248 -8.92930 -8.86971 -8.81384 -8.75859 -8.38873 -7.11472 -5.98830 -4.02171 1.15182 1.26371 3.05352 3.11074 3.34448 3.40283 3.44787 3.57859 3.79844 4.33937 4.45041 4.63872 4.69699 4.79898 4.86448 4.94557 5.00324 5.02989 5.12322 5.18369 5.25065 5.29220 5.33795 5.34927 5.44512 5.52979 5.57457 5.65629 5.78314 5.82397 5.86031 5.90461 5.90909 6.27586 6.31646 6.36948 6.38199 6.49199 6.52549 6.63138 6.72272 6.81881 6.84267 6.97011 7.04903 7.17240 7.50109 7.62596 7.77568 7.87314 8.22538 8.34462 8.57370 8.66609 9.04796 9.62592 11.08363 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.016591 B = 0.002590 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.232394 B =10808.718883 C =11943.808745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.212 3.788 3 H -0.001 1.001 4 C -0.500 4.500 5 H 0.065 0.935 6 C 0.058 3.942 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.288 1.288 12 N -0.519 5.519 13 C 0.035 3.965 14 C 0.033 3.967 15 C 0.517 3.483 16 O -0.518 6.518 17 N -0.738 5.738 18 C 0.131 3.869 19 C 0.114 3.886 20 H 0.055 0.945 21 C -0.080 4.080 22 C -0.089 4.089 23 C -0.123 4.123 24 C -0.120 4.120 25 C -0.119 4.119 26 C -0.118 4.118 27 N -0.534 5.534 28 C 0.024 3.976 29 C 0.017 3.983 30 H 0.006 0.994 31 H 0.036 0.964 32 H 0.087 0.913 33 H 0.260 0.740 34 H 0.075 0.925 35 H 0.061 0.939 36 H 0.004 0.996 37 H 0.102 0.898 38 H 0.048 0.952 39 H 0.395 0.605 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.130 0.870 43 H 0.120 0.880 44 H 0.119 0.881 45 H 0.122 0.878 46 H 0.118 0.882 47 H 0.025 0.975 48 H 0.070 0.930 49 H 0.072 0.928 50 H 0.077 0.923 51 H 0.071 0.929 52 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.544 0.896 -26.148 26.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.106 3.894 3 H 0.016 0.984 4 C -0.539 4.539 5 H 0.083 0.917 6 C -0.143 4.143 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.199 1.199 11 H -0.214 1.214 12 N -0.244 5.244 13 C -0.113 4.113 14 C -0.099 4.099 15 C 0.303 3.697 16 O -0.392 6.392 17 N -0.394 5.394 18 C 0.006 3.994 19 C 0.006 3.994 20 H 0.073 0.927 21 C -0.080 4.080 22 C -0.107 4.107 23 C -0.141 4.141 24 C -0.138 4.138 25 C -0.137 4.137 26 C -0.136 4.136 27 N -0.258 5.258 28 C -0.124 4.124 29 C -0.131 4.131 30 H 0.025 0.975 31 H 0.055 0.945 32 H 0.105 0.895 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.023 0.977 37 H 0.120 0.880 38 H 0.066 0.934 39 H 0.229 0.771 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.148 0.852 43 H 0.138 0.862 44 H 0.137 0.863 45 H 0.140 0.860 46 H 0.136 0.864 47 H 0.044 0.956 48 H 0.089 0.911 49 H 0.091 0.909 50 H 0.095 0.905 51 H 0.089 0.911 52 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -3.584 -0.734 -25.814 26.072 hybrid contribution 0.631 1.725 0.668 1.955 sum -2.953 0.991 -25.146 25.339 Atomic orbital electron populations 1.21882 0.97752 0.99834 0.99787 1.19304 0.92311 0.91951 0.85786 0.98369 1.21161 1.30877 1.12248 0.89581 0.91686 1.24923 0.95250 0.95095 0.99012 1.69889 1.37127 1.23120 1.23378 0.86498 0.79301 0.79268 0.82352 1.20648 1.19887 1.21385 1.61869 1.10240 1.51797 1.00483 1.22329 0.87873 0.98569 1.02557 1.22005 1.02831 0.94537 0.90483 1.20997 0.77831 0.87252 0.83588 1.90644 1.40415 1.22848 1.85271 1.45975 1.63560 1.23597 1.06249 1.21261 0.99678 0.95241 0.83195 1.20755 0.92021 0.95731 0.90922 0.92743 1.19622 0.93966 0.94090 1.00362 1.21037 0.93390 0.98302 0.98013 1.21201 0.94817 0.98019 1.00041 1.21183 0.99912 0.93201 0.99483 1.21091 0.93864 0.98558 1.00153 1.20993 0.94859 0.97250 1.00546 1.61907 1.12862 1.48992 1.02089 1.22418 1.01057 0.97399 0.91509 1.22516 0.86677 1.00595 1.03280 0.97468 0.94495 0.89468 0.93033 0.90673 0.92065 0.97741 0.87994 0.93422 0.77129 0.91396 0.90385 0.85198 0.86155 0.86251 0.86031 0.86365 0.95623 0.91121 0.90938 0.90452 0.91060 0.95277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.30 8.76 37.16 0.33 -2.98 16 2 C 0.21 5.46 2.06 -68.87 -0.14 5.32 16 3 H 0.00 -0.03 8.14 -51.93 -0.42 -0.46 16 4 C -0.50 -14.05 7.93 -34.44 -0.27 -14.32 16 5 H 0.07 1.85 6.39 -52.49 -0.34 1.52 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.90 -25.64 11.32 55.43 0.63 -25.01 16 8 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 10 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 12 N -0.52 -11.92 4.36 -237.73 -1.04 -12.96 16 13 C 0.03 0.77 8.88 60.06 0.53 1.30 16 14 C 0.03 0.61 5.26 -4.97 -0.03 0.59 16 15 C 0.52 8.94 7.52 -10.98 -0.08 8.85 16 16 O -0.52 -10.86 14.32 5.56 0.08 -10.78 16 17 N -0.74 -9.43 5.29 -60.29 -0.32 -9.75 16 18 C 0.13 1.51 4.75 -4.04 -0.02 1.49 16 19 C 0.11 1.03 1.78 -68.86 -0.12 0.91 16 20 H 0.05 0.46 8.00 -51.93 -0.42 0.05 16 21 C -0.08 -0.76 3.42 -104.62 -0.36 -1.12 16 22 C -0.09 -0.88 8.59 -39.59 -0.34 -1.22 16 23 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 24 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 25 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 26 C -0.12 -1.05 8.85 -39.58 -0.35 -1.40 16 27 N -0.53 -4.43 4.17 -244.57 -1.02 -5.45 16 28 C 0.02 0.17 9.27 60.07 0.56 0.73 16 29 C 0.02 0.13 8.87 60.06 0.53 0.66 16 30 H 0.01 0.14 6.20 -51.93 -0.32 -0.18 16 31 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.09 2.32 6.07 -51.93 -0.32 2.01 16 33 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 34 H 0.07 1.75 6.23 -51.93 -0.32 1.42 16 35 H 0.06 1.29 5.82 -51.93 -0.30 0.99 16 36 H 0.00 0.09 8.14 -51.93 -0.42 -0.34 16 37 H 0.10 1.81 5.83 -51.93 -0.30 1.51 16 38 H 0.05 0.81 8.12 -51.93 -0.42 0.39 16 39 H 0.39 4.13 7.49 -40.82 -0.31 3.82 16 40 H 0.07 0.79 6.27 -51.93 -0.33 0.47 16 41 H 0.08 1.06 8.13 -51.93 -0.42 0.64 16 42 H 0.13 1.28 7.71 -52.48 -0.40 0.87 16 43 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 44 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 45 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 46 H 0.12 0.86 7.99 -52.49 -0.42 0.44 16 47 H 0.03 0.17 8.14 -51.93 -0.42 -0.25 16 48 H 0.07 0.42 8.12 -51.92 -0.42 0.00 16 49 H 0.07 0.55 6.55 -51.93 -0.34 0.21 16 50 H 0.08 0.62 6.54 -51.93 -0.34 0.29 16 51 H 0.07 0.44 8.06 -51.92 -0.42 0.02 16 52 H 0.03 0.21 8.12 -51.93 -0.42 -0.22 16 LS Contribution 404.44 15.07 6.09 6.09 Total: -1.00 -32.17 404.44 -10.30 -42.47 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -8.65 Total: 2.80 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: -1.05 Total: -4.12 kcal Atomic # 7 Polarization: -51.43 SS G_CDS: -1.75 Total: -53.18 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.08 Total: -10.78 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.17 -10.30 -42.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248392768.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.168 kcal (2) G-P(sol) polarization free energy of solvation -32.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds