Wall clock time and date at job start Tue Mar 31 2020 17:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47100 * 2 1 4 4 C 1.50703 * 109.47092 * 119.99636 * 2 1 3 5 5 H 1.07995 * 119.99476 * 119.99824 * 4 2 1 6 6 C 1.37880 * 119.99820 * 299.99913 * 4 2 1 7 7 N 1.31512 * 120.00030 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99531 * 179.97438 * 6 4 2 9 9 H 1.48509 * 109.47060 * 269.99926 * 8 6 4 10 10 H 1.48500 * 109.47231 * 29.99797 * 8 6 4 11 11 H 1.48501 * 109.46923 * 150.00411 * 8 6 4 12 12 N 1.46893 * 109.47192 * 239.99731 * 2 1 3 13 13 C 1.46900 * 111.00335 * 183.95201 * 12 2 1 14 14 C 1.46907 * 110.99911 * 60.00136 * 12 2 1 15 15 C 1.50698 * 109.46943 * 190.00037 * 14 12 2 16 16 O 1.21279 * 120.00356 * 359.97438 * 15 14 12 17 17 N 1.34781 * 120.00102 * 179.97438 * 15 14 12 18 18 C 1.46496 * 119.99931 * 179.97438 * 17 15 14 19 19 C 1.53008 * 109.46899 * 174.77850 * 18 17 15 20 20 H 1.08997 * 109.46705 * 56.59991 * 19 18 17 21 21 C 1.50706 * 109.46785 * 296.60123 * 19 18 17 22 22 C 1.38230 * 120.00320 * 279.72326 * 21 19 18 23 23 C 1.38232 * 120.00187 * 179.78981 * 22 21 19 24 24 C 1.38237 * 119.99993 * 0.44291 * 23 22 21 25 25 C 1.38242 * 119.99859 * 359.81684 * 24 23 22 26 26 C 1.38234 * 119.99792 * 359.97256 * 25 24 23 27 27 N 1.46895 * 109.47155 * 176.60551 * 19 18 17 28 28 C 1.46902 * 110.99870 * 182.17783 * 27 19 18 29 29 C 1.46899 * 110.99730 * 306.12751 * 27 19 18 30 30 H 1.08998 * 109.47350 * 60.00212 * 1 2 3 31 31 H 1.09001 * 109.47261 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47090 * 300.00308 * 1 2 3 33 33 H 0.97005 * 119.99666 * 180.02562 * 7 6 4 34 34 H 1.09004 * 109.46795 * 59.99842 * 13 12 2 35 35 H 1.09002 * 109.47246 * 179.97438 * 13 12 2 36 36 H 1.08997 * 109.46930 * 300.00586 * 13 12 2 37 37 H 1.09001 * 109.46536 * 309.99481 * 14 12 2 38 38 H 1.08997 * 109.47364 * 70.00015 * 14 12 2 39 39 H 0.96998 * 119.99420 * 359.97438 * 17 15 14 40 40 H 1.08994 * 109.47853 * 294.77507 * 18 17 15 41 41 H 1.09002 * 109.47085 * 54.78186 * 18 17 15 42 42 H 1.08005 * 120.00060 * 0.02562 * 22 21 19 43 43 H 1.07997 * 120.00485 * 180.27829 * 23 22 21 44 44 H 1.07997 * 120.00215 * 179.83277 * 24 23 22 45 45 H 1.07997 * 120.00158 * 180.02562 * 25 24 23 46 46 H 1.07997 * 119.99559 * 180.02562 * 26 25 24 47 47 H 1.09001 * 109.47383 * 63.95342 * 28 27 19 48 48 H 1.09007 * 109.46903 * 183.95399 * 28 27 19 49 49 H 1.09000 * 109.47034 * 303.95027 * 28 27 19 50 50 H 1.09002 * 109.47324 * 66.49424 * 29 27 19 51 51 H 1.09008 * 109.47077 * 186.48667 * 29 27 19 52 52 H 1.09002 * 109.47274 * 306.48838 * 29 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8298 2.6033 8 14 2.3213 -1.1201 4.0080 9 1 1.3426 -2.1615 4.4120 10 1 3.6292 -1.7582 3.7122 11 1 2.4865 -0.1411 5.1123 12 7 2.0196 -0.6925 -1.1993 13 6 3.4850 -0.7945 -1.1870 14 6 1.5486 -0.0264 -2.4211 15 6 1.8579 -0.8912 -3.6158 16 8 2.4162 -1.9572 -3.4646 17 7 1.5142 -0.4800 -4.8525 18 6 1.8154 -1.3205 -6.0139 19 6 1.2101 -0.6904 -7.2701 20 1 1.5896 0.3247 -7.3862 21 6 -0.2909 -0.6539 -7.1403 22 6 -1.0350 -1.7895 -7.3998 23 6 -2.4114 -1.7571 -7.2766 24 6 -3.0445 -0.5866 -6.9027 25 6 -2.3008 0.5507 -6.6483 26 6 -0.9240 0.5171 -6.7673 27 7 1.5806 -1.4893 -8.4458 28 6 1.0591 -0.8846 -9.6788 29 6 3.0365 -1.6690 -8.5225 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 0.7087 1.1615 3.4844 34 1 3.8029 -1.3531 -0.3066 35 1 3.8208 -1.3117 -2.0858 36 1 3.9186 0.2051 -1.1591 37 1 0.4722 0.1323 -2.3563 38 1 2.0518 0.9345 -2.5281 39 1 1.0673 0.3724 -4.9733 40 1 2.8957 -1.4022 -6.1330 41 1 1.3902 -2.3129 -5.8643 42 1 -0.5406 -2.7032 -7.6952 43 1 -2.9924 -2.6456 -7.4750 44 1 -4.1201 -0.5605 -6.8090 45 1 -2.7954 1.4651 -6.3558 46 1 -0.3431 1.4054 -6.5682 47 1 1.5240 0.0896 -9.8306 48 1 1.2871 -1.5320 -10.5256 49 1 -0.0209 -0.7627 -9.5951 50 1 3.3717 -2.2814 -7.6854 51 1 3.2927 -2.1634 -9.4597 52 1 3.5255 -0.6958 -8.4796 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000248392768.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:40 Heat of formation + Delta-G solvation = -4.565737 kcal Electronic energy + Delta-G solvation = -29294.542902 eV Core-core repulsion = 25486.868850 eV Total energy + Delta-G solvation = -3807.674052 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.23077 -40.36424 -38.47694 -38.03744 -35.63341 -34.71858 -32.64472 -31.71435 -31.23581 -30.44804 -29.00449 -28.07661 -26.86049 -25.57818 -24.63641 -23.78288 -23.11661 -21.89263 -21.28519 -20.77346 -18.59566 -17.96610 -17.90737 -17.39598 -17.01567 -16.65812 -16.31891 -16.24323 -15.70941 -15.52875 -15.37684 -15.24678 -15.13165 -14.83460 -14.60322 -14.28272 -14.15928 -13.96996 -13.55733 -13.42859 -13.32469 -13.14626 -12.94899 -12.84921 -12.79379 -12.64273 -12.59820 -12.43032 -12.34828 -12.10866 -11.97889 -11.90304 -11.84385 -11.70264 -10.95057 -10.67492 -10.49728 -10.07486 -9.74820 -9.58738 -9.37905 -8.92064 -8.11598 -6.21980 0.46167 0.57423 1.42077 1.43418 1.53497 1.68516 2.01823 2.43749 2.86739 3.04070 3.16784 3.44132 3.60753 3.83021 3.97394 4.00717 4.19412 4.22873 4.30835 4.33500 4.36047 4.41879 4.47153 4.59326 4.60621 4.64827 4.67238 4.70489 4.74009 4.76849 4.90504 4.92264 5.02450 5.04516 5.05308 5.10119 5.13421 5.23471 5.25187 5.43394 5.49424 5.60961 5.65027 5.70079 5.72673 5.76808 6.02278 6.03476 6.17583 6.25702 6.37068 6.47992 6.74531 6.90874 7.31931 7.46666 8.94449 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.016591 B = 0.002590 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.232394 B =10808.718883 C =11943.808745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.218 3.782 3 H -0.026 1.026 4 C -0.522 4.522 5 H 0.053 0.947 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.957 3.043 9 H -0.277 1.277 10 H -0.272 1.272 11 H -0.280 1.280 12 N -0.536 5.536 13 C 0.045 3.955 14 C 0.032 3.968 15 C 0.521 3.479 16 O -0.560 6.560 17 N -0.716 5.716 18 C 0.135 3.865 19 C 0.125 3.875 20 H 0.067 0.933 21 C -0.088 4.088 22 C -0.102 4.102 23 C -0.134 4.134 24 C -0.129 4.129 25 C -0.127 4.127 26 C -0.124 4.124 27 N -0.544 5.544 28 C 0.028 3.972 29 C 0.017 3.983 30 H 0.039 0.961 31 H 0.026 0.974 32 H 0.064 0.936 33 H 0.263 0.737 34 H 0.054 0.946 35 H 0.069 0.931 36 H 0.009 0.991 37 H 0.111 0.889 38 H 0.068 0.932 39 H 0.410 0.590 40 H 0.069 0.931 41 H 0.056 0.944 42 H 0.124 0.876 43 H 0.131 0.869 44 H 0.135 0.865 45 H 0.138 0.862 46 H 0.137 0.863 47 H 0.031 0.969 48 H 0.080 0.920 49 H 0.065 0.935 50 H 0.066 0.934 51 H 0.084 0.916 52 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.854 1.698 -27.381 27.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.111 3.889 3 H -0.009 1.009 4 C -0.560 4.560 5 H 0.071 0.929 6 C -0.184 4.184 7 N -0.557 5.557 8 Si 0.783 3.217 9 H -0.203 1.203 10 H -0.197 1.197 11 H -0.205 1.205 12 N -0.261 5.261 13 C -0.103 4.103 14 C -0.099 4.099 15 C 0.308 3.692 16 O -0.437 6.437 17 N -0.371 5.371 18 C 0.011 3.989 19 C 0.017 3.983 20 H 0.085 0.915 21 C -0.089 4.089 22 C -0.120 4.120 23 C -0.152 4.152 24 C -0.147 4.147 25 C -0.145 4.145 26 C -0.142 4.142 27 N -0.269 5.269 28 C -0.120 4.120 29 C -0.130 4.130 30 H 0.058 0.942 31 H 0.045 0.955 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.028 0.972 37 H 0.129 0.871 38 H 0.086 0.914 39 H 0.246 0.754 40 H 0.087 0.913 41 H 0.075 0.925 42 H 0.142 0.858 43 H 0.149 0.851 44 H 0.153 0.847 45 H 0.156 0.844 46 H 0.154 0.846 47 H 0.050 0.950 48 H 0.099 0.901 49 H 0.084 0.916 50 H 0.085 0.915 51 H 0.102 0.898 52 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -3.913 0.099 -27.099 27.380 hybrid contribution 0.693 1.487 0.947 1.894 sum -3.220 1.587 -26.152 26.397 Atomic orbital electron populations 1.21697 0.96933 0.99190 1.00282 1.19103 0.92869 0.90418 0.86484 1.00867 1.21408 1.31222 1.12248 0.91144 0.92889 1.25634 0.95369 0.95769 1.01616 1.69989 1.37618 1.23963 1.24102 0.85566 0.78751 0.78320 0.79048 1.20262 1.19696 1.20548 1.61741 1.10684 1.52400 1.01262 1.22199 0.87648 0.98570 1.01925 1.22056 1.03390 0.95278 0.89164 1.20734 0.77592 0.86411 0.84485 1.90634 1.42666 1.24471 1.85971 1.45722 1.62052 1.24039 1.05264 1.21273 0.99812 0.94222 0.83629 1.20606 0.91700 0.96023 0.90001 0.91546 1.19707 0.94092 0.94322 1.00769 1.21097 0.93848 0.98393 0.98676 1.21418 0.94832 0.98816 1.00128 1.21461 1.00916 0.93141 0.99152 1.21387 0.94068 0.99208 0.99789 1.21245 0.95221 0.97628 1.00142 1.61890 1.13460 1.49218 1.02299 1.22403 1.00577 0.97875 0.91103 1.22525 0.86156 1.00808 1.03544 0.94213 0.95525 0.91700 0.92821 0.92726 0.91225 0.97219 0.87088 0.91413 0.75385 0.91297 0.92529 0.85844 0.85093 0.84728 0.84367 0.84552 0.95014 0.90092 0.91606 0.91545 0.89765 0.94766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.99 8.76 71.98 0.63 -5.36 16 2 C 0.22 11.26 2.06 44.17 0.09 11.35 16 3 H -0.03 -1.46 8.14 -2.39 -0.02 -1.47 16 4 C -0.52 -29.67 7.93 25.60 0.20 -29.47 16 5 H 0.05 3.08 6.39 -2.91 -0.02 3.06 16 6 C 0.01 0.84 5.30 84.66 0.45 1.29 16 7 N -0.92 -52.63 11.32 21.45 0.24 -52.38 16 8 Si 0.96 44.67 29.54 68.60 2.03 46.70 16 9 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 10 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 12 N -0.54 -24.53 4.36 -906.04 -3.95 -28.48 16 13 C 0.04 1.98 8.88 127.69 1.13 3.11 16 14 C 0.03 1.15 5.26 85.55 0.45 1.60 16 15 C 0.52 17.44 7.52 87.66 0.66 18.10 16 16 O -0.56 -23.37 14.32 -3.03 -0.04 -23.42 16 17 N -0.72 -17.08 5.29 -463.06 -2.45 -19.53 16 18 C 0.13 2.97 4.75 86.38 0.41 3.38 16 19 C 0.13 2.06 1.78 44.17 0.08 2.14 16 20 H 0.07 0.95 8.00 -2.39 -0.02 0.93 16 21 C -0.09 -1.55 3.42 -19.86 -0.07 -1.62 16 22 C -0.10 -1.94 8.59 22.27 0.19 -1.74 16 23 C -0.13 -2.36 10.05 22.27 0.22 -2.14 16 24 C -0.13 -2.11 10.05 22.27 0.22 -1.88 16 25 C -0.13 -1.98 10.05 22.27 0.22 -1.76 16 26 C -0.12 -1.94 8.85 22.27 0.20 -1.74 16 27 N -0.54 -8.26 4.17 -927.69 -3.87 -12.13 16 28 C 0.03 0.34 9.27 127.69 1.18 1.53 16 29 C 0.02 0.23 8.87 127.69 1.13 1.36 16 30 H 0.04 1.62 6.20 -2.39 -0.01 1.61 16 31 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.06 3.46 6.07 -2.38 -0.01 3.44 16 33 H 0.26 14.29 8.31 -92.70 -0.77 13.52 16 34 H 0.05 2.59 6.23 -2.38 -0.01 2.57 16 35 H 0.07 2.94 5.82 -2.39 -0.01 2.93 16 36 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 37 H 0.11 3.71 5.83 -2.39 -0.01 3.69 16 38 H 0.07 2.16 8.12 -2.39 -0.02 2.14 16 39 H 0.41 7.49 7.49 -92.71 -0.69 6.79 16 40 H 0.07 1.54 6.27 -2.39 -0.01 1.53 16 41 H 0.06 1.53 8.13 -2.39 -0.02 1.51 16 42 H 0.12 2.43 7.71 -2.91 -0.02 2.41 16 43 H 0.13 1.90 8.06 -2.91 -0.02 1.87 16 44 H 0.13 1.69 8.06 -2.91 -0.02 1.67 16 45 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 46 H 0.14 1.55 7.99 -2.91 -0.02 1.53 16 47 H 0.03 0.35 8.14 -2.39 -0.02 0.33 16 48 H 0.08 0.82 8.12 -2.38 -0.02 0.80 16 49 H 0.07 0.90 6.55 -2.39 -0.02 0.89 16 50 H 0.07 1.03 6.54 -2.39 -0.02 1.01 16 51 H 0.08 0.89 8.06 -2.38 -0.02 0.87 16 52 H 0.03 0.42 8.12 -2.39 -0.02 0.40 16 Total: -1.00 -69.10 404.44 -0.42 -69.52 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: 0.21 Total: 21.58 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: 7.42 Total: -1.85 kcal Atomic # 7 Polarization: -102.50 SS G_CDS: -10.02 Total: -112.53 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.04 Total: -23.42 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -69.10 -0.42 -69.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248392768.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.951 kcal (2) G-P(sol) polarization free energy of solvation -69.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds