Wall clock time and date at job start Tue Mar 31 2020 17:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99792 * 2 1 3 5 5 C 1.53003 * 109.47015 * 184.99741 * 4 2 1 6 6 N 1.46500 * 109.47377 * 180.02562 * 5 4 2 7 7 C 1.34779 * 119.99877 * 180.02562 * 6 5 4 8 8 O 1.21579 * 120.00014 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99831 * 179.97438 * 7 6 5 10 10 C 1.46492 * 120.00295 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47649 * 179.97438 * 10 9 7 12 12 C 1.50703 * 109.47450 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99442 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99948 * 180.02562 * 12 11 10 15 15 N 1.31515 * 119.99866 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 120.00124 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47050 * 89.99845 * 16 14 12 18 18 H 1.48499 * 109.47068 * 209.99708 * 16 14 12 19 19 H 1.48497 * 109.47182 * 330.00102 * 16 14 12 20 20 N 1.46898 * 109.47006 * 239.99936 * 2 1 3 21 21 C 1.46907 * 110.99846 * 306.04564 * 20 2 1 22 22 C 1.46894 * 111.00206 * 70.00284 * 20 2 1 23 23 C 1.50700 * 109.47269 * 169.99805 * 22 20 2 24 24 C 1.38231 * 119.99941 * 269.72461 * 23 22 20 25 25 C 1.38234 * 119.99822 * 179.76424 * 24 23 22 26 26 C 1.38236 * 120.00041 * 0.50961 * 25 24 23 27 27 C 1.38229 * 119.99901 * 359.74803 * 26 25 24 28 28 C 1.38232 * 120.00098 * 359.97438 * 27 26 25 29 29 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 30 30 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 32 32 H 1.08994 * 109.47465 * 305.00017 * 4 2 1 33 33 H 1.08998 * 109.47565 * 65.00449 * 4 2 1 34 34 H 1.08999 * 109.47145 * 300.00897 * 5 4 2 35 35 H 1.09000 * 109.46883 * 59.99966 * 5 4 2 36 36 H 0.96997 * 119.99983 * 0.02562 * 6 5 4 37 37 H 0.97004 * 119.99575 * 0.02562 * 9 7 6 38 38 H 1.09006 * 109.47296 * 300.00576 * 10 9 7 39 39 H 1.09005 * 109.47350 * 60.00023 * 10 9 7 40 40 H 1.08997 * 109.46999 * 300.00109 * 11 10 9 41 41 H 1.09002 * 109.46838 * 60.00164 * 11 10 9 42 42 H 0.96997 * 119.99719 * 180.02562 * 15 14 12 43 43 H 1.08998 * 109.46867 * 60.00675 * 21 20 2 44 44 H 1.08998 * 109.46750 * 180.02562 * 21 20 2 45 45 H 1.08994 * 109.46944 * 299.99912 * 21 20 2 46 46 H 1.08998 * 109.46955 * 290.00099 * 22 20 2 47 47 H 1.08998 * 109.47049 * 49.99909 * 22 20 2 48 48 H 1.08001 * 120.00003 * 0.02562 * 24 23 22 49 49 H 1.08001 * 120.00311 * 180.23514 * 25 24 23 50 50 H 1.07998 * 120.00006 * 179.72073 * 26 25 24 51 51 H 1.08000 * 120.00155 * 179.97438 * 27 26 25 52 52 H 1.08005 * 120.00335 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6134 1.3138 6 7 4.0531 -1.3044 2.5097 7 6 5.3740 -1.3399 2.7753 8 8 6.1602 -0.7980 2.0227 9 7 5.8232 -1.9752 3.8758 10 6 7.2589 -2.0143 4.1643 11 6 7.4977 -2.7904 5.4610 12 6 8.9748 -2.8311 5.7575 13 1 9.6732 -2.3510 5.0880 14 6 9.4343 -3.4811 6.8832 15 7 10.7232 -3.5162 7.1421 16 14 8.2262 -4.3120 8.0405 17 1 8.0208 -5.7197 7.6146 18 1 8.7680 -4.2872 9.4229 19 1 6.9292 -3.5897 8.0041 20 7 2.0197 -0.6925 -1.1994 21 6 1.4343 -2.0355 -1.3077 22 6 1.7530 0.0972 -2.4090 23 6 2.4775 -0.5163 -3.5794 24 6 3.7635 -0.1119 -3.8852 25 6 4.4298 -0.6782 -4.9558 26 6 3.8064 -1.6413 -5.7269 27 6 2.5185 -2.0419 -5.4242 28 6 1.8542 -1.4798 -4.3502 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6053 -0.2617 2.1370 33 1 1.7516 -1.7715 1.2057 34 1 3.9994 -1.0728 0.4260 35 1 3.8532 0.4369 1.3574 36 1 3.4259 -1.7365 3.1103 37 1 5.1959 -2.4073 4.4764 38 1 7.7811 -2.5071 3.3441 39 1 7.6351 -0.9973 4.2755 40 1 6.9757 -2.2972 6.2809 41 1 7.1216 -3.8074 5.3503 42 1 11.0465 -3.9739 7.9339 43 1 0.3490 -1.9549 -1.3694 44 1 1.8140 -2.5261 -2.2040 45 1 1.7059 -2.6221 -0.4301 46 1 0.6815 0.1053 -2.6087 47 1 2.1026 1.1188 -2.2603 48 1 4.2491 0.6434 -3.2852 49 1 5.4360 -0.3650 -5.1926 50 1 4.3253 -2.0805 -6.5661 51 1 2.0312 -2.7941 -6.0269 52 1 0.8477 -1.7924 -4.1139 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273642113.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:03 Heat of formation + Delta-G solvation = -33.678845 kcal Electronic energy + Delta-G solvation = -27770.176212 eV Core-core repulsion = 23961.239721 eV Total energy + Delta-G solvation = -3808.936491 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.00158 -40.52882 -39.10687 -36.82872 -35.96483 -34.78104 -33.81627 -32.12377 -31.78890 -31.18537 -29.58900 -28.14247 -26.75226 -25.52272 -23.90883 -23.38551 -22.59988 -22.06342 -21.85639 -20.56915 -19.28152 -18.85607 -17.65089 -17.47440 -17.15655 -16.69993 -16.32855 -16.28616 -16.25059 -15.53736 -15.38287 -15.36687 -15.09282 -14.96057 -14.59315 -14.55262 -14.34544 -14.20527 -13.68944 -13.49804 -13.33391 -13.31354 -13.03563 -12.82849 -12.62020 -12.43036 -12.29148 -12.16568 -12.12882 -12.06591 -11.79895 -11.74610 -11.69722 -11.60571 -11.50731 -11.22144 -10.77434 -10.31526 -9.77641 -9.69076 -9.66133 -9.09739 -8.28485 -6.35754 0.45155 0.53634 1.40073 1.43125 1.54460 1.81175 2.21620 2.38371 2.76738 3.06321 3.25151 3.40501 3.82348 3.91947 3.96445 4.06797 4.18527 4.23087 4.29686 4.36644 4.37514 4.43111 4.46637 4.50644 4.53633 4.64131 4.69822 4.75444 4.76902 4.77417 4.81969 4.91938 4.98964 5.09567 5.15678 5.16451 5.18798 5.21573 5.27593 5.36947 5.43319 5.47094 5.58864 5.60018 5.65964 5.69187 5.73342 6.09316 6.12475 6.17785 6.22423 6.25244 6.71495 7.20661 7.28532 7.66196 8.88373 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.015070 B = 0.001873 C = 0.001740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.562775 B =14945.651860 C =16090.426920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.085 3.915 3 H 0.084 0.916 4 C -0.109 4.109 5 C 0.150 3.850 6 N -0.732 5.732 7 C 0.694 3.306 8 O -0.644 6.644 9 N -0.732 5.732 10 C 0.164 3.836 11 C -0.011 4.011 12 C -0.539 4.539 13 H 0.027 0.973 14 C 0.002 3.998 15 N -0.951 5.951 16 Si 0.962 3.038 17 H -0.265 1.265 18 H -0.287 1.287 19 H -0.236 1.236 20 N -0.543 5.543 21 C 0.016 3.984 22 C 0.097 3.903 23 C -0.085 4.085 24 C -0.117 4.117 25 C -0.135 4.135 26 C -0.132 4.132 27 C -0.130 4.130 28 C -0.119 4.119 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.052 0.948 35 H 0.045 0.955 36 H 0.411 0.589 37 H 0.410 0.590 38 H 0.038 0.962 39 H 0.039 0.961 40 H 0.038 0.962 41 H 0.036 0.964 42 H 0.268 0.732 43 H 0.044 0.956 44 H 0.061 0.939 45 H 0.067 0.933 46 H 0.056 0.944 47 H 0.082 0.918 48 H 0.119 0.881 49 H 0.128 0.872 50 H 0.135 0.865 51 H 0.139 0.861 52 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.232 4.708 -21.382 38.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.024 4.024 3 H 0.102 0.898 4 C -0.147 4.147 5 C 0.026 3.974 6 N -0.389 5.389 7 C 0.394 3.606 8 O -0.526 6.526 9 N -0.388 5.388 10 C 0.040 3.960 11 C -0.048 4.048 12 C -0.578 4.578 13 H 0.046 0.954 14 C -0.195 4.195 15 N -0.591 5.591 16 Si 0.784 3.216 17 H -0.190 1.190 18 H -0.213 1.213 19 H -0.159 1.159 20 N -0.266 5.266 21 C -0.131 4.131 22 C -0.030 4.030 23 C -0.086 4.086 24 C -0.136 4.136 25 C -0.153 4.153 26 C -0.150 4.150 27 C -0.147 4.147 28 C -0.138 4.138 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.109 0.891 33 H 0.098 0.902 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.248 0.752 37 H 0.246 0.754 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.056 0.944 41 H 0.054 0.946 42 H 0.077 0.923 43 H 0.063 0.937 44 H 0.080 0.920 45 H 0.086 0.914 46 H 0.074 0.926 47 H 0.100 0.900 48 H 0.137 0.863 49 H 0.146 0.854 50 H 0.153 0.847 51 H 0.157 0.843 52 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -29.892 5.108 -21.899 37.406 hybrid contribution -0.567 -0.540 0.830 1.141 sum -30.459 4.568 -21.070 37.317 Atomic orbital electron populations 1.22385 0.95614 1.02808 1.02972 1.21668 0.93779 0.98053 0.88908 0.89805 1.21798 0.92206 1.02420 0.98316 1.21084 0.94968 0.95687 0.85706 1.45000 1.04447 1.60394 1.29015 1.16234 0.83402 0.79444 0.81526 1.90877 1.56757 1.53234 1.51742 1.45109 1.08944 1.58903 1.25857 1.20854 0.78806 0.99165 0.97215 1.19638 0.95251 0.96467 0.93487 1.21258 0.92403 1.35205 1.08899 0.95410 1.26113 0.97302 0.96475 0.99613 1.70082 1.15710 1.44852 1.28443 0.85502 0.79843 0.79325 0.76969 1.18993 1.21258 1.15885 1.62164 1.59362 1.03265 1.01836 1.22515 0.97781 0.90269 1.02579 1.21020 0.97830 0.96852 0.87307 1.19900 0.94774 0.97405 0.96496 1.21209 0.94717 1.00432 0.97223 1.21408 1.00503 0.97514 0.95916 1.21430 0.95733 0.97575 1.00262 1.21413 0.95169 1.00367 0.97790 1.21248 1.00518 0.96533 0.95472 0.92244 0.91691 0.90936 0.89063 0.90207 0.92935 0.93664 0.75248 0.75369 0.94354 0.94238 0.94367 0.94587 0.92345 0.93737 0.92029 0.91391 0.92640 0.89971 0.86303 0.85418 0.84718 0.84321 0.84953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.38 8.44 71.98 0.61 -0.77 16 2 C 0.08 0.96 2.31 44.92 0.10 1.07 16 3 H 0.08 1.02 7.93 -2.39 -0.02 1.00 16 4 C -0.11 -1.32 4.72 30.60 0.14 -1.18 16 5 C 0.15 3.21 5.56 86.38 0.48 3.69 16 6 N -0.73 -17.03 5.56 -478.53 -2.66 -19.69 16 7 C 0.69 24.04 8.57 179.05 1.53 25.57 16 8 O -0.64 -29.17 16.34 -3.97 -0.06 -29.23 16 9 N -0.73 -24.30 5.56 -478.55 -2.66 -26.96 16 10 C 0.16 7.05 5.61 86.38 0.48 7.53 16 11 C -0.01 -0.48 4.16 29.85 0.12 -0.36 16 12 C -0.54 -31.35 9.66 25.60 0.25 -31.11 16 13 H 0.03 1.81 7.99 -2.91 -0.02 1.79 16 14 C 0.00 0.11 5.47 84.65 0.46 0.57 16 15 N -0.95 -59.92 13.96 21.45 0.30 -59.62 16 16 Si 0.96 42.60 27.47 68.60 1.88 44.49 16 17 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 18 H -0.29 -12.61 7.11 99.48 0.71 -11.91 16 19 H -0.24 -9.24 6.54 99.48 0.65 -8.59 16 20 N -0.54 -7.73 4.16 -901.62 -3.75 -11.48 16 21 C 0.02 0.21 8.44 127.69 1.08 1.28 16 22 C 0.10 1.28 4.69 85.56 0.40 1.68 16 23 C -0.09 -1.39 4.89 -19.87 -0.10 -1.48 16 24 C -0.12 -2.19 9.70 22.27 0.22 -1.97 16 25 C -0.14 -2.39 10.05 22.27 0.22 -2.17 16 26 C -0.13 -2.04 10.05 22.27 0.22 -1.82 16 27 C -0.13 -1.82 10.05 22.27 0.22 -1.60 16 28 C -0.12 -1.70 7.90 22.27 0.18 -1.52 16 29 H 0.06 0.45 6.91 -2.39 -0.02 0.43 16 30 H 0.06 0.48 6.33 -2.39 -0.02 0.47 16 31 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.08 0.87 6.34 -2.39 -0.02 0.86 16 34 H 0.05 1.42 7.75 -2.39 -0.02 1.40 16 35 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.41 6.37 8.49 -92.71 -0.79 5.58 16 37 H 0.41 10.34 8.49 -92.71 -0.79 9.55 16 38 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 39 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 40 H 0.04 1.62 7.20 -2.39 -0.02 1.60 16 41 H 0.04 1.51 7.57 -2.39 -0.02 1.49 16 42 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 43 H 0.04 0.43 6.21 -2.39 -0.01 0.41 16 44 H 0.06 0.91 5.89 -2.39 -0.01 0.90 16 45 H 0.07 0.90 6.37 -2.39 -0.02 0.88 16 46 H 0.06 0.59 7.00 -2.39 -0.02 0.57 16 47 H 0.08 1.07 7.87 -2.39 -0.02 1.05 16 48 H 0.12 2.20 8.06 -2.91 -0.02 2.17 16 49 H 0.13 1.95 8.06 -2.91 -0.02 1.92 16 50 H 0.13 1.55 8.06 -2.91 -0.02 1.53 16 51 H 0.14 1.32 8.06 -2.91 -0.02 1.29 16 52 H 0.13 1.38 7.98 -2.91 -0.02 1.35 16 Total: -1.00 -78.01 411.62 -1.03 -79.04 By element: Atomic # 1 Polarization: 26.76 SS G_CDS: -0.72 Total: 26.04 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: 6.63 Total: -2.58 kcal Atomic # 7 Polarization: -108.99 SS G_CDS: -8.77 Total: -117.75 kcal Atomic # 8 Polarization: -29.17 SS G_CDS: -0.06 Total: -29.23 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 1.88 Total: 44.49 kcal Total: -78.01 -1.03 -79.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273642113.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.362 kcal (2) G-P(sol) polarization free energy of solvation -78.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds