Wall clock time and date at job start Tue Mar 31 2020 18:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46897 * 111.00198 * 2 1 4 4 C 1.46902 * 111.00146 * 123.95600 * 2 1 3 5 5 C 1.53001 * 109.46901 * 66.04314 * 4 2 1 6 6 C 1.50705 * 109.46863 * 180.02562 * 5 4 2 7 7 C 1.38237 * 119.99647 * 90.00018 * 6 5 4 8 8 C 1.38238 * 119.99946 * 179.97438 * 7 6 5 9 9 C 1.38241 * 119.99590 * 0.02740 * 8 7 6 10 10 C 1.50701 * 119.99576 * 179.97438 * 9 8 7 11 11 N 1.46499 * 109.46992 * 89.99874 * 10 9 8 12 12 C 1.34779 * 119.99872 * 179.97438 * 11 10 9 13 13 O 1.21590 * 120.00297 * 0.02562 * 12 11 10 14 14 N 1.34783 * 119.99768 * 180.02562 * 12 11 10 15 15 C 1.46503 * 119.99449 * 179.97438 * 14 12 11 16 16 C 1.53005 * 109.46592 * 179.97438 * 15 14 12 17 17 C 1.53000 * 109.46526 * 180.02562 * 16 15 14 18 18 C 1.50707 * 109.46565 * 180.02562 * 17 16 15 19 19 H 1.07998 * 120.00016 * 359.97438 * 18 17 16 20 20 C 1.37885 * 119.99716 * 180.02562 * 18 17 16 21 21 N 1.31509 * 120.00175 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99588 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47472 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47069 * 120.00350 * 22 20 18 25 25 H 1.48499 * 109.47385 * 239.99900 * 22 20 18 26 26 C 1.38233 * 120.00269 * 0.24973 * 9 8 7 27 27 C 1.38228 * 120.00130 * 270.02646 * 6 5 4 28 28 H 1.08995 * 109.47430 * 296.04240 * 1 2 3 29 29 H 1.09001 * 109.47392 * 56.04653 * 1 2 3 30 30 H 1.09003 * 109.47400 * 176.04459 * 1 2 3 31 31 H 1.08998 * 109.47649 * 183.95280 * 3 2 1 32 32 H 1.09001 * 109.47449 * 303.95871 * 3 2 1 33 33 H 1.09001 * 109.47000 * 63.95420 * 3 2 1 34 34 H 1.09001 * 109.46712 * 306.04716 * 4 2 1 35 35 H 1.08992 * 109.47412 * 186.04836 * 4 2 1 36 36 H 1.09001 * 109.47109 * 60.00645 * 5 4 2 37 37 H 1.08992 * 109.47514 * 300.00460 * 5 4 2 38 38 H 1.07998 * 120.00143 * 0.02562 * 7 6 5 39 39 H 1.07991 * 120.00062 * 180.02562 * 8 7 6 40 40 H 1.09002 * 109.47060 * 210.00086 * 10 9 8 41 41 H 1.09001 * 109.47380 * 330.00174 * 10 9 8 42 42 H 0.97000 * 120.00420 * 0.02562 * 11 10 9 43 43 H 0.96992 * 119.99896 * 0.02562 * 14 12 11 44 44 H 1.09000 * 109.47319 * 299.99842 * 15 14 12 45 45 H 1.08996 * 109.47236 * 60.00639 * 15 14 12 46 46 H 1.09000 * 109.47248 * 299.99993 * 16 15 14 47 47 H 1.08996 * 109.46721 * 60.00430 * 16 15 14 48 48 H 1.09001 * 109.47753 * 299.99671 * 17 16 15 49 49 H 1.08996 * 109.47354 * 60.00715 * 17 16 15 50 50 H 0.96992 * 120.00087 * 179.97438 * 21 20 18 51 51 H 1.08003 * 119.99927 * 179.72604 * 26 9 8 52 52 H 1.08001 * 120.00620 * 0.02562 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.6314 -2.2426 0.9703 6 6 2.1710 -3.0284 2.1376 7 6 1.3968 -3.2044 3.2692 8 6 1.8914 -3.9256 4.3398 9 6 3.1606 -4.4702 4.2789 10 6 3.7001 -5.2560 5.4462 11 7 3.3515 -6.6698 5.2861 12 6 3.7330 -7.5675 6.2162 13 8 4.3660 -7.2038 7.1885 14 7 3.4127 -8.8684 6.0686 15 6 3.8279 -9.8441 7.0794 16 6 3.3400 -11.2367 6.6746 17 6 3.7731 -12.2556 7.7305 18 6 3.2931 -13.6273 7.3315 19 1 2.7348 -13.7590 6.4165 20 6 3.5661 -14.7140 8.1351 21 7 4.2456 -14.5536 9.2495 22 14 2.9705 -16.4141 7.6408 23 1 2.2356 -16.3263 6.3533 24 1 4.1362 -17.3207 7.4839 25 1 2.0669 -16.9471 8.6918 26 6 3.9369 -4.2894 3.1495 27 6 3.4402 -3.5726 2.0769 28 1 -0.3634 0.4512 0.9233 29 1 -0.3634 0.5740 -0.8524 30 1 -0.3634 -1.0252 -0.0709 31 1 3.0828 1.3432 -0.0708 32 1 1.5898 1.9164 -0.8524 33 1 1.7044 1.8723 0.9233 34 1 1.5611 -0.3873 2.0628 35 1 3.0796 -0.6611 1.1756 36 1 2.0658 -2.6214 0.0451 37 1 0.5472 -2.3475 0.9322 38 1 0.4051 -2.7792 3.3166 39 1 1.2865 -4.0634 5.2237 40 1 4.7843 -5.1511 5.4847 41 1 3.2653 -4.8771 6.3712 42 1 2.8468 -6.9601 4.5102 43 1 2.9080 -9.1585 5.2928 44 1 4.9152 -9.8477 7.1560 45 1 3.3965 -9.5746 8.0434 46 1 2.2527 -11.2328 6.5982 47 1 3.7710 -11.5065 5.7105 48 1 4.8604 -12.2597 7.8073 49 1 3.3418 -11.9856 8.6944 50 1 4.4372 -15.3179 9.8150 51 1 4.9301 -4.7112 3.1038 52 1 4.0454 -3.4344 1.1932 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276200925.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:40 Heat of formation + Delta-G solvation = -24.003612 kcal Electronic energy + Delta-G solvation = -26474.020066 eV Core-core repulsion = 22665.503125 eV Total energy + Delta-G solvation = -3808.516941 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.23782 -39.52456 -38.06067 -35.77975 -34.95148 -33.39620 -33.05075 -31.31092 -31.17306 -29.74377 -28.13234 -27.03652 -25.97814 -24.15421 -23.11013 -22.89880 -21.78001 -20.86036 -20.81994 -20.35404 -18.20352 -16.88376 -16.49583 -16.37367 -16.03185 -15.73240 -15.66431 -15.33870 -15.28272 -14.99475 -14.50704 -14.20010 -14.14222 -13.92148 -13.86994 -13.63533 -13.28702 -12.98597 -12.81335 -12.68961 -12.31005 -12.27863 -12.21757 -12.01749 -11.77996 -11.68512 -11.53000 -11.30134 -11.16460 -10.90834 -10.70535 -10.55308 -10.13686 -9.84102 -9.44503 -9.29828 -9.18317 -9.10409 -9.02026 -8.90963 -8.56969 -8.36069 -6.00534 -4.03456 0.82465 1.03926 2.85132 3.30791 3.32739 3.38332 3.39944 3.41872 3.51013 4.31766 4.35296 4.43547 4.49370 4.51483 4.55191 4.63215 4.64742 4.71974 4.83925 4.95993 5.02283 5.08929 5.10528 5.11290 5.33834 5.34247 5.35409 5.37433 5.43411 5.46274 5.55741 5.70656 5.72615 5.74781 5.84341 6.00966 6.21109 6.22039 6.25947 6.42496 6.43761 6.44743 6.55942 6.61514 6.65045 6.83702 7.04725 7.10747 7.65925 7.78714 7.98709 8.18014 8.39721 8.77983 9.03549 9.60719 11.10866 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.028078 B = 0.001323 C = 0.001287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.966653 B =21165.498484 C =21753.927861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.549 5.549 3 C 0.024 3.976 4 C 0.060 3.940 5 C -0.078 4.078 6 C -0.077 4.077 7 C -0.119 4.119 8 C -0.097 4.097 9 C -0.108 4.108 10 C 0.181 3.819 11 N -0.748 5.748 12 C 0.700 3.300 13 O -0.594 6.594 14 N -0.741 5.741 15 C 0.135 3.865 16 C -0.120 4.120 17 C 0.023 3.977 18 C -0.522 4.522 19 H 0.056 0.944 20 C 0.057 3.943 21 N -0.894 5.894 22 Si 0.892 3.108 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 C -0.096 4.096 27 C -0.117 4.117 28 H 0.026 0.974 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.025 0.975 34 H 0.036 0.964 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.121 0.879 39 H 0.125 0.875 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.395 0.605 43 H 0.394 0.606 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.053 0.947 47 H 0.054 0.946 48 H 0.019 0.981 49 H 0.019 0.981 50 H 0.260 0.740 51 H 0.125 0.875 52 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.670 32.278 -19.840 38.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.273 5.273 3 C -0.125 4.125 4 C -0.068 4.068 5 C -0.116 4.116 6 C -0.078 4.078 7 C -0.137 4.137 8 C -0.115 4.115 9 C -0.108 4.108 10 C 0.057 3.943 11 N -0.405 5.405 12 C 0.399 3.601 13 O -0.472 6.472 14 N -0.396 5.396 15 C 0.012 3.988 16 C -0.158 4.158 17 C -0.014 4.014 18 C -0.560 4.560 19 H 0.074 0.926 20 C -0.144 4.144 21 N -0.533 5.533 22 Si 0.720 3.280 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.115 4.115 27 C -0.135 4.135 28 H 0.044 0.956 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.044 0.956 34 H 0.054 0.946 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.139 0.861 39 H 0.143 0.857 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.229 0.771 43 H 0.227 0.773 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.072 0.928 47 H 0.072 0.928 48 H 0.038 0.962 49 H 0.038 0.962 50 H 0.070 0.930 51 H 0.143 0.857 52 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.833 32.285 -19.175 38.000 hybrid contribution -1.061 -0.838 -0.148 1.360 sum -6.894 31.447 -19.323 37.548 Atomic orbital electron populations 1.22465 0.87339 1.02553 1.00561 1.61988 1.08148 1.13967 1.43211 1.22387 1.00899 0.88604 1.00575 1.22133 1.00483 0.92922 0.91268 1.20604 1.01242 0.93368 0.96343 1.19865 0.94488 0.97995 0.95426 1.21030 0.99849 0.99614 0.93222 1.21115 0.94949 0.96782 0.98664 1.19934 0.94988 1.00051 0.95876 1.19963 1.00152 0.78876 0.95298 1.45159 1.61930 1.07088 1.26293 1.16026 0.80048 0.81109 0.82872 1.90922 1.45458 1.79293 1.31521 1.45387 1.60466 1.05931 1.27787 1.21512 0.99770 0.87369 0.90171 1.21892 1.00165 0.92489 1.01300 1.19035 0.96994 0.92178 0.93221 1.21251 1.35073 0.92446 1.07228 0.92606 1.25025 0.95216 0.99194 0.94998 1.69973 1.39815 1.30671 1.12814 0.86538 0.78527 0.84418 0.78510 1.19761 1.21010 1.21011 1.21134 0.99827 0.97866 0.92651 1.21059 0.95328 0.98304 0.98804 0.95569 0.91342 0.90961 0.91227 0.91247 0.95608 0.94551 0.90500 0.89973 0.90872 0.86125 0.85742 0.90873 0.90903 0.77117 0.77321 0.91958 0.91967 0.92780 0.92771 0.96230 0.96233 0.92992 0.85676 0.85824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.32 60.06 0.56 0.65 16 2 N -0.55 -3.19 5.02 -251.27 -1.26 -4.45 16 3 C 0.02 0.11 9.57 60.06 0.57 0.68 16 4 C 0.06 0.34 4.94 -3.82 -0.02 0.32 16 5 C -0.08 -0.43 5.27 -27.88 -0.15 -0.57 16 6 C -0.08 -0.51 5.13 -104.62 -0.54 -1.05 16 7 C -0.12 -0.82 9.70 -39.58 -0.38 -1.20 16 8 C -0.10 -0.74 9.70 -39.58 -0.38 -1.12 16 9 C -0.11 -0.89 5.25 -104.62 -0.55 -1.44 16 10 C 0.18 1.84 5.80 -5.19 -0.03 1.80 16 11 N -0.75 -8.36 5.55 -66.41 -0.37 -8.73 16 12 C 0.70 10.89 8.57 -86.91 -0.74 10.15 16 13 O -0.59 -11.84 16.34 5.29 0.09 -11.75 16 14 N -0.74 -10.99 5.56 -65.22 -0.36 -11.35 16 15 C 0.13 2.45 5.67 -4.04 -0.02 2.42 16 16 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 17 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 18 C -0.52 -14.64 9.11 -34.43 -0.31 -14.96 16 19 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 21 N -0.89 -26.94 13.29 55.43 0.74 -26.21 16 22 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 23 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 26 C -0.10 -0.73 9.70 -39.58 -0.38 -1.12 16 27 C -0.12 -0.80 9.70 -39.58 -0.38 -1.19 16 28 H 0.03 0.12 8.14 -51.93 -0.42 -0.30 16 29 H 0.07 0.28 8.12 -51.93 -0.42 -0.15 16 30 H 0.07 0.31 6.47 -51.93 -0.34 -0.03 16 31 H 0.07 0.30 8.12 -51.93 -0.42 -0.12 16 32 H 0.07 0.27 8.12 -51.93 -0.42 -0.15 16 33 H 0.03 0.12 8.14 -51.93 -0.42 -0.31 16 34 H 0.04 0.22 8.12 -51.93 -0.42 -0.20 16 35 H 0.08 0.44 8.06 -51.93 -0.42 0.02 16 36 H 0.08 0.46 8.09 -51.93 -0.42 0.04 16 37 H 0.07 0.37 6.50 -51.93 -0.34 0.03 16 38 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 39 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.07 0.79 8.08 -51.93 -0.42 0.37 16 41 H 0.07 0.79 8.09 -51.93 -0.42 0.37 16 42 H 0.40 3.48 8.48 -40.82 -0.35 3.14 16 43 H 0.39 4.67 8.49 -40.82 -0.35 4.32 16 44 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 46 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 47 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 50 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 51 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 52 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 LS Contribution 427.91 15.07 6.45 6.45 Total: -1.00 -33.72 427.91 -12.23 -45.95 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -9.35 Total: 0.71 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: -3.14 Total: -7.14 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: -1.26 Total: -50.74 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: 0.09 Total: -11.75 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 6.45 Total: 6.45 kcal Total: -33.72 -12.23 -45.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276200925.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.942 kcal (2) G-P(sol) polarization free energy of solvation -33.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds