Wall clock time and date at job start Tue Mar 31 2020 18:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46897 * 111.00198 * 2 1 4 4 C 1.46902 * 111.00146 * 123.95600 * 2 1 3 5 5 C 1.53001 * 109.46901 * 66.04314 * 4 2 1 6 6 C 1.50705 * 109.46863 * 180.02562 * 5 4 2 7 7 C 1.38237 * 119.99647 * 90.00018 * 6 5 4 8 8 C 1.38238 * 119.99946 * 179.97438 * 7 6 5 9 9 C 1.38241 * 119.99590 * 0.02740 * 8 7 6 10 10 C 1.50701 * 119.99576 * 179.97438 * 9 8 7 11 11 N 1.46499 * 109.46992 * 89.99874 * 10 9 8 12 12 C 1.34779 * 119.99872 * 179.97438 * 11 10 9 13 13 O 1.21590 * 120.00297 * 0.02562 * 12 11 10 14 14 N 1.34783 * 119.99768 * 180.02562 * 12 11 10 15 15 C 1.46503 * 119.99449 * 179.97438 * 14 12 11 16 16 C 1.53005 * 109.46592 * 179.97438 * 15 14 12 17 17 C 1.53000 * 109.46526 * 180.02562 * 16 15 14 18 18 C 1.50707 * 109.46565 * 180.02562 * 17 16 15 19 19 H 1.07998 * 120.00016 * 359.97438 * 18 17 16 20 20 C 1.37885 * 119.99716 * 180.02562 * 18 17 16 21 21 N 1.31509 * 120.00175 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99588 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47472 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47069 * 120.00350 * 22 20 18 25 25 H 1.48499 * 109.47385 * 239.99900 * 22 20 18 26 26 C 1.38233 * 120.00269 * 0.24973 * 9 8 7 27 27 C 1.38228 * 120.00130 * 270.02646 * 6 5 4 28 28 H 1.08995 * 109.47430 * 296.04240 * 1 2 3 29 29 H 1.09001 * 109.47392 * 56.04653 * 1 2 3 30 30 H 1.09003 * 109.47400 * 176.04459 * 1 2 3 31 31 H 1.08998 * 109.47649 * 183.95280 * 3 2 1 32 32 H 1.09001 * 109.47449 * 303.95871 * 3 2 1 33 33 H 1.09001 * 109.47000 * 63.95420 * 3 2 1 34 34 H 1.09001 * 109.46712 * 306.04716 * 4 2 1 35 35 H 1.08992 * 109.47412 * 186.04836 * 4 2 1 36 36 H 1.09001 * 109.47109 * 60.00645 * 5 4 2 37 37 H 1.08992 * 109.47514 * 300.00460 * 5 4 2 38 38 H 1.07998 * 120.00143 * 0.02562 * 7 6 5 39 39 H 1.07991 * 120.00062 * 180.02562 * 8 7 6 40 40 H 1.09002 * 109.47060 * 210.00086 * 10 9 8 41 41 H 1.09001 * 109.47380 * 330.00174 * 10 9 8 42 42 H 0.97000 * 120.00420 * 0.02562 * 11 10 9 43 43 H 0.96992 * 119.99896 * 0.02562 * 14 12 11 44 44 H 1.09000 * 109.47319 * 299.99842 * 15 14 12 45 45 H 1.08996 * 109.47236 * 60.00639 * 15 14 12 46 46 H 1.09000 * 109.47248 * 299.99993 * 16 15 14 47 47 H 1.08996 * 109.46721 * 60.00430 * 16 15 14 48 48 H 1.09001 * 109.47753 * 299.99671 * 17 16 15 49 49 H 1.08996 * 109.47354 * 60.00715 * 17 16 15 50 50 H 0.96992 * 120.00087 * 179.97438 * 21 20 18 51 51 H 1.08003 * 119.99927 * 179.72604 * 26 9 8 52 52 H 1.08001 * 120.00620 * 0.02562 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.6314 -2.2426 0.9703 6 6 2.1710 -3.0284 2.1376 7 6 1.3968 -3.2044 3.2692 8 6 1.8914 -3.9256 4.3398 9 6 3.1606 -4.4702 4.2789 10 6 3.7001 -5.2560 5.4462 11 7 3.3515 -6.6698 5.2861 12 6 3.7330 -7.5675 6.2162 13 8 4.3660 -7.2038 7.1885 14 7 3.4127 -8.8684 6.0686 15 6 3.8279 -9.8441 7.0794 16 6 3.3400 -11.2367 6.6746 17 6 3.7731 -12.2556 7.7305 18 6 3.2931 -13.6273 7.3315 19 1 2.7348 -13.7590 6.4165 20 6 3.5661 -14.7140 8.1351 21 7 4.2456 -14.5536 9.2495 22 14 2.9705 -16.4141 7.6408 23 1 2.2356 -16.3263 6.3533 24 1 4.1362 -17.3207 7.4839 25 1 2.0669 -16.9471 8.6918 26 6 3.9369 -4.2894 3.1495 27 6 3.4402 -3.5726 2.0769 28 1 -0.3634 0.4512 0.9233 29 1 -0.3634 0.5740 -0.8524 30 1 -0.3634 -1.0252 -0.0709 31 1 3.0828 1.3432 -0.0708 32 1 1.5898 1.9164 -0.8524 33 1 1.7044 1.8723 0.9233 34 1 1.5611 -0.3873 2.0628 35 1 3.0796 -0.6611 1.1756 36 1 2.0658 -2.6214 0.0451 37 1 0.5472 -2.3475 0.9322 38 1 0.4051 -2.7792 3.3166 39 1 1.2865 -4.0634 5.2237 40 1 4.7843 -5.1511 5.4847 41 1 3.2653 -4.8771 6.3712 42 1 2.8468 -6.9601 4.5102 43 1 2.9080 -9.1585 5.2928 44 1 4.9152 -9.8477 7.1560 45 1 3.3965 -9.5746 8.0434 46 1 2.2527 -11.2328 6.5982 47 1 3.7710 -11.5065 5.7105 48 1 4.8604 -12.2597 7.8073 49 1 3.3418 -11.9856 8.6944 50 1 4.4372 -15.3179 9.8150 51 1 4.9301 -4.7112 3.1038 52 1 4.0454 -3.4344 1.1932 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276200925.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:39 Heat of formation + Delta-G solvation = -45.873204 kcal Electronic energy + Delta-G solvation = -26474.968403 eV Core-core repulsion = 22665.503125 eV Total energy + Delta-G solvation = -3809.465278 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.17121 -40.39297 -38.50583 -37.12302 -36.08516 -35.17942 -33.95040 -32.85692 -31.85324 -30.49060 -28.57635 -28.46348 -26.95969 -25.07873 -24.35606 -23.65510 -22.29749 -22.27573 -21.86112 -21.38208 -19.38920 -18.54648 -17.56412 -17.07292 -17.03593 -16.66792 -16.50395 -16.27167 -16.07087 -15.88743 -15.55136 -15.48704 -15.36080 -15.06234 -14.36830 -14.27037 -14.26247 -13.83458 -13.76954 -13.70671 -13.46971 -13.33605 -13.17829 -12.76540 -12.69851 -12.65325 -12.53496 -12.45219 -12.32402 -12.05459 -11.85421 -11.67057 -11.66187 -11.62041 -11.32019 -11.13809 -10.54959 -10.40962 -9.84554 -9.76522 -9.60038 -9.33150 -8.18462 -6.29837 0.22967 0.49243 1.42580 1.42664 1.55909 1.77711 2.13861 2.42932 2.76779 3.04141 3.15578 3.42518 3.67196 3.85094 4.00948 4.08574 4.13128 4.18473 4.21219 4.24966 4.30542 4.40547 4.48709 4.54904 4.57851 4.63238 4.67041 4.68369 4.73103 4.77024 4.95849 4.97530 5.00691 5.00753 5.02215 5.04251 5.18340 5.18938 5.22595 5.42067 5.46039 5.48431 5.55843 5.65760 5.70514 5.72706 5.85740 6.00316 6.04126 6.05420 6.09679 6.24053 6.87725 7.10268 7.39845 7.57087 8.94004 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.028078 B = 0.001323 C = 0.001287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.966653 B =21165.498484 C =21753.927861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.562 5.562 3 C 0.023 3.977 4 C 0.063 3.937 5 C -0.071 4.071 6 C -0.075 4.075 7 C -0.122 4.122 8 C -0.102 4.102 9 C -0.114 4.114 10 C 0.183 3.817 11 N -0.727 5.727 12 C 0.698 3.302 13 O -0.640 6.640 14 N -0.730 5.730 15 C 0.150 3.850 16 C -0.100 4.100 17 C 0.023 3.977 18 C -0.540 4.540 19 H 0.067 0.933 20 C -0.002 4.002 21 N -0.935 5.935 22 Si 0.967 3.033 23 H -0.258 1.258 24 H -0.280 1.280 25 H -0.280 1.280 26 C -0.101 4.101 27 C -0.121 4.121 28 H 0.025 0.975 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.025 0.975 34 H 0.032 0.968 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.136 0.864 39 H 0.129 0.871 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.410 0.590 43 H 0.412 0.588 44 H 0.047 0.953 45 H 0.046 0.954 46 H 0.068 0.932 47 H 0.068 0.932 48 H -0.008 1.008 49 H -0.008 1.008 50 H 0.263 0.737 51 H 0.130 0.870 52 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.158 32.579 -22.362 40.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.286 5.286 3 C -0.126 4.126 4 C -0.065 4.065 5 C -0.109 4.109 6 C -0.076 4.076 7 C -0.140 4.140 8 C -0.120 4.120 9 C -0.115 4.115 10 C 0.060 3.940 11 N -0.384 5.384 12 C 0.397 3.603 13 O -0.522 6.522 14 N -0.386 5.386 15 C 0.025 3.975 16 C -0.138 4.138 17 C -0.015 4.015 18 C -0.578 4.578 19 H 0.085 0.915 20 C -0.200 4.200 21 N -0.576 5.576 22 Si 0.791 3.209 23 H -0.182 1.182 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.120 4.120 27 C -0.138 4.138 28 H 0.044 0.956 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.043 0.957 34 H 0.050 0.950 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.153 0.847 39 H 0.147 0.853 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.247 0.753 43 H 0.248 0.752 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.086 0.914 47 H 0.087 0.913 48 H 0.011 0.989 49 H 0.011 0.989 50 H 0.072 0.928 51 H 0.148 0.852 52 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -7.359 32.610 -21.772 39.895 hybrid contribution -0.596 -0.831 0.606 1.189 sum -7.956 31.779 -21.166 39.003 Atomic orbital electron populations 1.22498 0.86760 1.02934 1.00800 1.62010 1.08817 1.14521 1.43222 1.22418 1.01060 0.88228 1.00847 1.22075 1.00278 0.92990 0.91108 1.20552 1.01543 0.93005 0.95759 1.20039 0.94357 0.97556 0.95664 1.21224 1.00570 0.99298 0.92938 1.21220 0.94766 0.96871 0.99188 1.19741 0.95550 1.00733 0.95455 1.19965 0.99772 0.78218 0.96060 1.45005 1.60843 1.06937 1.25568 1.16171 0.79713 0.81467 0.82923 1.90895 1.47596 1.80061 1.33682 1.45031 1.60525 1.05322 1.27679 1.21081 0.98644 0.87378 0.90411 1.21591 1.00941 0.91553 0.99758 1.18950 0.95089 0.93535 0.93899 1.21719 1.34982 0.93528 1.07592 0.91517 1.26008 0.95266 1.03849 0.94868 1.70115 1.41210 1.32095 1.14163 0.85375 0.78075 0.78752 0.78687 1.18160 1.20605 1.20596 1.21237 1.00041 0.98064 0.92649 1.21251 0.95627 0.97926 0.99041 0.95609 0.90791 0.90576 0.91062 0.90576 0.95672 0.95008 0.90780 0.89950 0.90255 0.84657 0.85295 0.91637 0.91671 0.75348 0.75203 0.93502 0.93513 0.91356 0.91349 0.98923 0.98921 0.92827 0.85223 0.84444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.32 127.69 1.19 1.33 16 2 N -0.56 -5.72 5.02 -948.87 -4.76 -10.48 16 3 C 0.02 0.18 9.57 127.69 1.22 1.41 16 4 C 0.06 0.62 4.94 86.30 0.43 1.05 16 5 C -0.07 -0.64 5.27 29.85 0.16 -0.48 16 6 C -0.08 -0.86 5.13 -19.87 -0.10 -0.96 16 7 C -0.12 -1.45 9.70 22.27 0.22 -1.24 16 8 C -0.10 -1.41 9.70 22.27 0.22 -1.20 16 9 C -0.11 -1.76 5.25 -19.86 -0.10 -1.86 16 10 C 0.18 3.63 5.80 85.63 0.50 4.13 16 11 N -0.73 -15.44 5.55 -482.28 -2.68 -18.12 16 12 C 0.70 21.37 8.57 179.05 1.53 22.90 16 13 O -0.64 -25.94 16.34 -4.00 -0.07 -26.01 16 14 N -0.73 -20.84 5.56 -478.51 -2.66 -23.50 16 15 C 0.15 5.44 5.67 86.38 0.49 5.93 16 16 C -0.10 -3.90 5.27 30.60 0.16 -3.74 16 17 C 0.02 1.21 4.97 29.85 0.15 1.35 16 18 C -0.54 -30.26 9.11 25.60 0.23 -30.02 16 19 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 20 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 21 N -0.94 -57.41 13.29 21.45 0.28 -57.12 16 22 Si 0.97 43.89 29.54 68.60 2.03 45.91 16 23 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 24 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 25 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 26 C -0.10 -1.40 9.70 22.27 0.22 -1.19 16 27 C -0.12 -1.44 9.70 22.27 0.22 -1.22 16 28 H 0.03 0.20 8.14 -2.39 -0.02 0.18 16 29 H 0.07 0.49 8.12 -2.39 -0.02 0.47 16 30 H 0.08 0.52 6.47 -2.39 -0.02 0.51 16 31 H 0.07 0.54 8.12 -2.39 -0.02 0.52 16 32 H 0.08 0.50 8.12 -2.39 -0.02 0.48 16 33 H 0.02 0.20 8.14 -2.39 -0.02 0.18 16 34 H 0.03 0.34 8.12 -2.39 -0.02 0.32 16 35 H 0.07 0.76 8.06 -2.39 -0.02 0.74 16 36 H 0.08 0.77 8.09 -2.39 -0.02 0.75 16 37 H 0.08 0.63 6.50 -2.39 -0.02 0.62 16 38 H 0.14 1.17 8.06 -2.91 -0.02 1.15 16 39 H 0.13 1.62 8.06 -2.92 -0.02 1.60 16 40 H 0.07 1.41 8.08 -2.39 -0.02 1.39 16 41 H 0.06 1.41 8.09 -2.39 -0.02 1.39 16 42 H 0.41 6.40 8.48 -92.71 -0.79 5.61 16 43 H 0.41 8.80 8.49 -92.71 -0.79 8.02 16 44 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 46 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 47 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 48 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 49 H -0.01 -0.44 8.14 -2.39 -0.02 -0.45 16 50 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 51 H 0.13 1.63 8.06 -2.91 -0.02 1.60 16 52 H 0.14 1.22 8.06 -2.91 -0.02 1.20 16 Total: -1.00 -73.04 427.91 -1.35 -74.39 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: -0.68 Total: 18.42 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: 7.18 Total: -3.49 kcal Atomic # 7 Polarization: -99.41 SS G_CDS: -9.82 Total: -109.23 kcal Atomic # 8 Polarization: -25.94 SS G_CDS: -0.07 Total: -26.01 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Total: -73.04 -1.35 -74.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276200925.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.518 kcal (2) G-P(sol) polarization free energy of solvation -73.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds